Personal tools

CL:0000914: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000914
|alt_id=
|name=immature NK T cell
|namespace=cell;;efo
|def="An immature alpha-beta T-cell that express Egr2. These cells give rise to T cells expressing NK markers." [GO_REF:0000031, GOC:add, GOC:pam, GOC:tfm, PMID:17589542, PMID:19169262]
|xref=
|is_a=CL:0000790
|synonym="immature NK T lymphocyte" EXACT [];;"immature NK T-cell" EXACT [];;"immature NK T-lymphocyte" EXACT [];;"immature NKT cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An immature alpha-beta T-cell that express Egr2. These cells give rise to T cells expressing NK markers." [GO_REF:0000031, GOC:add, GOC:pam, GOC:tfm, PMID:17589542, PMID:19169262]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=CL:0000809
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000914
|is_a=CL:0000790
|is_obsolete=
|located_in=
|located_in=
|name=immature NK T cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="immature NK T lymphocyte" EXACT [];;"immature NK T-cell" EXACT [];;"immature NK T-lymphocyte" EXACT [];;"immature NKT cell" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:39, 12 September 2014

Name:immature NK T cell
Namespace:FANTOM
Definition:"An immature alpha-beta T-cell that express Egr2. These cells give rise to T cells expressing NK markers." [GO_REF:0000031, GOC:add, GOC:pam, GOC:tfm, PMID:17589542, PMID:19169262]
Synonyms: "immature NK T lymphocyte" EXACT []
"immature NK T-cell" EXACT []
"immature NK T-lymphocyte" EXACT []
"immature NKT cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000790(immature alpha-beta T cell)
develops_from:CL:0000809(double-positive, alpha-beta thymocyte)



Children


is a:CL:0002039 (immature NK T cell stage I),CL:0002040 (immature NK T cell stage II),CL:0002041 (immature NK T cell stage III),CL:0002042 (immature NK T cell stage IV)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000914 (immature NK T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr4:2428062..2428080,+#_b85eb35c74fec37ba1682a8552c89fa8p1@uc003gfa.1
5.42e-195FFCP PHASE1:Hg19::chr2:141989111..141989114,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr2:141989111..141989114, -
5.42e-195FFCP PHASE2:Hg19::chr1:237900222..237900230,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr1:237900222..237900230, +
5.42e-195FFCP PHASE2:Hg19::chr8:51970952..51970959,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr8:51970952..51970959, +
5.42e-195FFCP PHASE1:Hg19::chr4:175842470..175842486,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:175842470..175842486, -
5.42e-195FFCP PHASE1:Hg19::chr16:67022368..67022374,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr16:67022368..67022374, -
5.42e-195FFCP PHASE2:Hg19::chr3:152204326..152204345,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr3:152204326..152204345, +
5.42e-195FFCP PHASE2:Hg19::chr1:189141918..189141929,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr1:189141918..189141929, +
5.42e-195FFCP PHASE1:Hg19::chr4:111448516..111448521,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:111448516..111448521, +
5.42e-195FFCP PHASE1:Hg19::chr4:176123823..176123829,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:176123823..176123829, +
5.42e-195FFCP PHASE1:Hg19::chr15:92006720..92006726,+#_b85eb35c74fec37ba1682a8552c89fa8p1@uc002bqw.2
5.42e-195FFCP PHASE2:Hg19::chr2:202521027..202521058,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr2:202521027..202521058, -
5.42e-195FFCP PHASE2:Hg19::chr21:47278815..47278834,+#_b85eb35c74fec37ba1682a8552c89fa8p6@PCBP3
5.42e-195FFCP PHASE1:Hg19::chr5:24272119..24272147,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr5:24272119..24272147, -
5.42e-195FFCP PHASE2:Hg19::chr8:50081052..50081075,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr8:50081052..50081075, -
5.42e-195FFCP PHASE1:Hg19::chr4:134707449..134707458,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:134707449..134707458, -
5.42e-195FFCP PHASE2:Hg19::chr15:91989133..91989141,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr15:91989133..91989141, +
5.42e-195FFCP PHASE1:Hg19::chr14:22962827..22962830,+#_b85eb35c74fec37ba1682a8552c89fa8p3@uc001weo.2
5.42e-195FFCP PHASE2:Hg19::chr4:175858389..175858405,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:175858389..175858405, -
5.42e-195FFCP PHASE2:Hg19::chrX:133321044..133321049,+#_b85eb35c74fec37ba1682a8552c89fa8p@chrX:133321044..133321049, +
5.42e-195FFCP PHASE1:Hg19::chr4:133657651..133657654,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:133657651..133657654, -
5.42e-195FFCP PHASE1:Hg19::chr17:14103251..14103258,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr17:14103251..14103258, +
5.42e-195FFCP PHASE2:Hg19::chr10:11846830..11846860,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr10:11846830..11846860, -
5.42e-195FFCP PHASE1:Hg19::chr21:43982135..43982142,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr21:43982135..43982142, +
5.42e-195FFCP PHASE2:Hg19::chr4:128884938..128884941,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:128884938..128884941, -
5.42e-195FFCP PHASE2:Hg19::chr9:4544914..4544917,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr9:4544914..4544917, -
5.42e-195FFCP PHASE1:Hg19::chr2:146687090..146687095,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr2:146687090..146687095, +
5.42e-195FFCP PHASE1:Hg19::chr21:39490932..39490937,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr21:39490932..39490937, +
5.42e-195FFCP PHASE1:Hg19::chr13:24623546..24623587,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr13:24623546..24623587, -
5.42e-195FFCP PHASE2:Hg19::chr7:38287827..38287832,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr7:38287827..38287832, -
5.42e-195FFCP PHASE1:Hg19::chr4:175842511..175842520,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:175842511..175842520, -
5.42e-195FFCP PHASE1:Hg19::chr1:200990231..200990238,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr1:200990231..200990238, -
5.42e-195FFCP PHASE2:Hg19::chr8:67519931..67519935,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr8:67519931..67519935, -
5.42e-195FFCP PHASE2:Hg19::chr2:162762231..162762234,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr2:162762231..162762234, +
5.42e-195FFCP PHASE2:Hg19::chr6:128263833..128263838,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr6:128263833..128263838, -
5.42e-195FFCP PHASE1:Hg19::chr7:117926347..117926353,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr7:117926347..117926353, -
5.42e-195FFCP PHASE2:Hg19::chr4:2428062..2428080,+#_b85eb35c74fec37ba1682a8552c89fa8p1@uc003gfa.1
5.42e-195FFCP PHASE2:Hg19::chr3:192598433..192598481,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr3:192598433..192598481, -
5.42e-195FFCP PHASE2:Hg19::chr2:141989111..141989114,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr2:141989111..141989114, -
5.42e-195FFCP PHASE1:Hg19::chr9:116857558..116857566,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr9:116857558..116857566, -
5.42e-195FFCP PHASE1:Hg19::chr15:69972162..69972169,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr15:69972162..69972169, +
5.42e-195FFCP PHASE2:Hg19::chr8:75251775..75251785,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr8:75251775..75251785, +
5.42e-195FFCP PHASE2:Hg19::chr13:24623546..24623587,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr13:24623546..24623587, -
5.42e-195FFCP PHASE1:Hg19::chr4:134707474..134707504,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:134707474..134707504, -
5.42e-195FFCP PHASE2:Hg19::chr15:92006659..92006679,+#_b85eb35c74fec37ba1682a8552c89fa8p2@uc002bqw.2
5.42e-195FFCP PHASE1:Hg19::chr9:72117884..72117889,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr9:72117884..72117889, -
5.42e-195FFCP PHASE2:Hg19::chr4:134707420..134707442,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:134707420..134707442, -
5.42e-195FFCP PHASE1:Hg19::chr4:105805755..105805761,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:105805755..105805761, +
5.42e-195FFCP PHASE1:Hg19::chr8:114877856..114877881,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr8:114877856..114877881, -
5.42e-195FFCP PHASE2:Hg19::chr4:133657589..133657598,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:133657589..133657598, -
5.42e-195FFCP PHASE1:Hg19::chr2:146998057..146998070,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr2:146998057..146998070, -
5.42e-195FFCP PHASE1:Hg19::chr15:91989101..91989105,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr15:91989101..91989105, +
5.42e-195FFCP PHASE1:Hg19::chr4:175842537..175842553,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:175842537..175842553, -
5.42e-195FFCP PHASE1:Hg19::chr9:87797549..87797564,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr9:87797549..87797564, +
5.42e-195FFCP PHASE1:Hg19::chr16:67022522..67022529,+#_b85eb35c74fec37ba1682a8552c89fa8p12@CES4A
5.42e-195FFCP PHASE2:Hg19::chr17:14101134..14101143,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr17:14101134..14101143, +
5.42e-195FFCP PHASE2:Hg19::chr7:19479837..19479844,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr7:19479837..19479844, +
5.42e-195FFCP PHASE2:Hg19::chr5:24272119..24272147,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr5:24272119..24272147, -
5.42e-195FFCP PHASE1:Hg19::chr22:46041912..46041915,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr22:46041912..46041915, +
5.42e-195FFCP PHASE1:Hg19::chr1:237900222..237900230,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr1:237900222..237900230, +
5.42e-195FFCP PHASE2:Hg19::chr4:175842470..175842486,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:175842470..175842486, -
5.42e-195FFCP PHASE2:Hg19::chr14:22962827..22962830,+#_b85eb35c74fec37ba1682a8552c89fa8p3@uc001weo.2
5.42e-195FFCP PHASE1:Hg19::chr3:152204326..152204345,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr3:152204326..152204345, +
5.42e-195FFCP PHASE2:Hg19::chr16:67022368..67022374,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr16:67022368..67022374, -
5.42e-195FFCP PHASE2:Hg19::chr4:111448516..111448521,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:111448516..111448521, +
5.42e-195FFCP PHASE2:Hg19::chr2:146687090..146687095,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr2:146687090..146687095, +
5.42e-195FFCP PHASE1:Hg19::chr1:189141918..189141929,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr1:189141918..189141929, +
5.42e-195FFCP PHASE2:Hg19::chr15:92006720..92006726,+#_b85eb35c74fec37ba1682a8552c89fa8p1@uc002bqw.2
5.42e-195FFCP PHASE1:Hg19::chr8:16739475..16739490,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr8:16739475..16739490, -
5.42e-195FFCP PHASE2:Hg19::chr4:176123823..176123829,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:176123823..176123829, +
5.42e-195FFCP PHASE1:Hg19::chr2:202521027..202521058,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr2:202521027..202521058, -
5.42e-195FFCP PHASE2:Hg19::chr4:134707449..134707458,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:134707449..134707458, -
5.42e-195FFCP PHASE1:Hg19::chr21:47278815..47278834,+#_b85eb35c74fec37ba1682a8552c89fa8p6@PCBP3
5.42e-195FFCP PHASE2:Hg19::chr4:133657651..133657654,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:133657651..133657654, -
5.42e-195FFCP PHASE1:Hg19::chrX:133321044..133321049,+#_b85eb35c74fec37ba1682a8552c89fa8p@chrX:133321044..133321049, +
5.42e-195FFCP PHASE1:Hg19::chr8:51970952..51970959,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr8:51970952..51970959, +
5.42e-195FFCP PHASE1:Hg19::chr15:91989133..91989141,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr15:91989133..91989141, +
5.42e-195FFCP PHASE1:Hg19::chr4:175858389..175858405,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:175858389..175858405, -
5.42e-195FFCP PHASE2:Hg19::chr21:43982135..43982142,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr21:43982135..43982142, +
5.42e-195FFCP PHASE2:Hg19::chr17:14103251..14103258,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr17:14103251..14103258, +
5.42e-195FFCP PHASE2:Hg19::chr21:39490932..39490937,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr21:39490932..39490937, +
5.42e-195FFCP PHASE2:Hg19::chr4:175842511..175842520,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:175842511..175842520, -
5.42e-195FFCP PHASE1:Hg19::chr7:38287827..38287832,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr7:38287827..38287832, -
5.42e-195FFCP PHASE1:Hg19::chr4:128884938..128884941,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:128884938..128884941, -
5.42e-195FFCP PHASE1:Hg19::chr9:4544914..4544917,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr9:4544914..4544917, -
5.42e-195FFCP PHASE1:Hg19::chr8:50081052..50081075,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr8:50081052..50081075, -
5.42e-195FFCP PHASE1:Hg19::chr10:11846830..11846860,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr10:11846830..11846860, -
5.42e-195FFCP PHASE2:Hg19::chr2:146998057..146998070,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr2:146998057..146998070, -
5.42e-195FFCP PHASE2:Hg19::chr1:200990231..200990238,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr1:200990231..200990238, -
5.42e-195FFCP PHASE2:Hg19::chr9:116857558..116857566,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr9:116857558..116857566, -
5.42e-195FFCP PHASE2:Hg19::chr15:69972162..69972169,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr15:69972162..69972169, +
5.42e-195FFCP PHASE2:Hg19::chr4:134707474..134707504,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr4:134707474..134707504, -
5.42e-195FFCP PHASE1:Hg19::chr3:192598433..192598481,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr3:192598433..192598481, -
5.42e-195FFCP PHASE2:Hg19::chr22:46041912..46041915,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr22:46041912..46041915, +
5.42e-195FFCP PHASE1:Hg19::chr8:75251775..75251785,+#_b85eb35c74fec37ba1682a8552c89fa8p@chr8:75251775..75251785, +
5.42e-195FFCP PHASE2:Hg19::chr7:117926347..117926353,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr7:117926347..117926353, -
5.42e-195FFCP PHASE1:Hg19::chr6:128263833..128263838,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr6:128263833..128263838, -
5.42e-195FFCP PHASE1:Hg19::chr13:49078833..49078841,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr13:49078833..49078841, -
5.42e-195FFCP PHASE2:Hg19::chr9:72117884..72117889,-#_b85eb35c74fec37ba1682a8552c89fa8p@chr9:72117884..72117889, -
5.42e-195FFCP PHASE1:Hg19::chr15:92006659..92006679,+#_b85eb35c74fec37ba1682a8552c89fa8p2@uc002bqw.2

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000914&oldid=3275382"