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{{CL
{{CL
|id=CL:0000810
|alt_id=
|name=CD4-positive, alpha-beta thymocyte
|namespace=cell;;efo
|def="An immature alpha-beta T cell that is located in the thymus and is CD4-positive and CD8-negative." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
|xref=
|is_a=CL:0000790;;CL:0000893
|synonym="CD4-positive, alpha-beta immature T lymphocyte" EXACT [];;"CD4-positive, alpha-beta immature T-cell" EXACT [];;"CD4-positive, alpha-beta immature T-lymphocyte" EXACT [];;"SP CD4 cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An immature alpha-beta T cell that is located in the thymus and is CD4-positive and CD8-negative." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=CL:0000809
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000810
|is_a=CL:0000790 ;;CL:0000893
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=CD4-positive, alpha-beta thymocyte
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002370
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="CD4-positive, alpha-beta immature T lymphocyte" EXACT [];;"CD4-positive, alpha-beta immature T-cell" EXACT [];;"CD4-positive, alpha-beta immature T-lymphocyte" EXACT [];;"SP CD4 cell" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:37, 12 September 2014

Name:CD4-positive, alpha-beta thymocyte
Namespace:FANTOM
Definition:"An immature alpha-beta T cell that is located in the thymus and is CD4-positive and CD8-negative." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
Synonyms: "CD4-positive, alpha-beta immature T lymphocyte" EXACT []
"CD4-positive, alpha-beta immature T-cell" EXACT []
"CD4-positive, alpha-beta immature T-lymphocyte" EXACT []
"SP CD4 cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000790(immature alpha-beta T cell),CL:0000893(thymocyte)
develops_from:CL:0000809(double-positive, alpha-beta thymocyte)
part_of:UBERON:0002370(thymus)



Children


is a:CL:0002432 (CD24-positive, CD4 single-positive thymocyte),CL:0002433 (CD69-positive, CD4-positive single-positive thymocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000810 (CD4-positive, alpha-beta thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.55e-98FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_e6f85c36541b061668c3fdcbabb284b0p@chr2:162762361..162762364, +
2.55e-98FFCP PHASE2:Hg19::chr1:183622379..183622388,-#_e6f85c36541b061668c3fdcbabb284b0p4@APOBEC4
2.55e-98FFCP PHASE1:Hg19::chr1:183622379..183622388,-#_e6f85c36541b061668c3fdcbabb284b0p4@APOBEC4
2.55e-98FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_e6f85c36541b061668c3fdcbabb284b0p@chr2:162762361..162762364, +
1.36e-86FFCP PHASE2:Mm9::chr13:30878406..30878419,+#_b687a46575b2ca315637b12f90c23f1fp@chr13:30878406..30878419, +
1.36e-86FFCP PHASE2:Mm9::chrX:54476786..54476810,+#_b687a46575b2ca315637b12f90c23f1fp@chrX:54476786..54476810, +
1.36e-86FFCP PHASE1:Mm9::chr13:30878406..30878419,+#_b687a46575b2ca315637b12f90c23f1fp@chr13:30878406..30878419, +
1.36e-86FFCP PHASE1:Mm9::chrX:54476786..54476810,+#_b687a46575b2ca315637b12f90c23f1fp@chrX:54476786..54476810, +
1.01e-74FFCP PHASE2:Mm9::chr16:52032670..52032685,+#_b9858a2ee05c2761e2ed04cfd7d2109bp@chr16:52032670..52032685, +
1.01e-74FFCP PHASE1:Mm9::chr16:52032670..52032685,+#_b9858a2ee05c2761e2ed04cfd7d2109bp@chr16:52032670..52032685, +
2.41e-74FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_f4fef961de26f46da0968fa1a4f72704p1@ENSMUST00000103701
2.41e-74FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_f4fef961de26f46da0968fa1a4f72704p@chr16:93777453..93777464, +
2.41e-74FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_f4fef961de26f46da0968fa1a4f72704p1@ENSMUST00000103701
2.41e-74FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_f4fef961de26f46da0968fa1a4f72704p@chr16:93777453..93777464, +
2.48e-72FFCP PHASE1:Mm9::chr11:11587720..11587735,+#_ebc4759825edf021fc9767ce9ce29d68p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE1:Mm9::chr15:80403112..80403122,+#_ebc4759825edf021fc9767ce9ce29d68p12@Grap2
2.48e-72FFCP PHASE1:Mm9::chr11:11592840..11592849,+#_ebc4759825edf021fc9767ce9ce29d68p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE2:Mm9::chr15:80403112..80403122,+#_ebc4759825edf021fc9767ce9ce29d68p12@Grap2
2.48e-72FFCP PHASE1:Mm9::chr14:54827490..54827502,+#_ebc4759825edf021fc9767ce9ce29d68p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE2:Mm9::chr14:122362270..122362291,-#_ebc4759825edf021fc9767ce9ce29d68p@chr14:122362270..122362291, -
2.48e-72FFCP PHASE2:Mm9::chr14:54827490..54827502,+#_ebc4759825edf021fc9767ce9ce29d68p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE1:Mm9::chr13:30853488..30853499,+#_ebc4759825edf021fc9767ce9ce29d68p@chr13:30853488..30853499, +
2.48e-72FFCP PHASE2:Mm9::chr11:11587720..11587735,+#_ebc4759825edf021fc9767ce9ce29d68p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE2:Mm9::chr13:30853488..30853499,+#_ebc4759825edf021fc9767ce9ce29d68p@chr13:30853488..30853499, +
2.48e-72FFCP PHASE1:Mm9::chr14:122362270..122362291,-#_ebc4759825edf021fc9767ce9ce29d68p@chr14:122362270..122362291, -
2.48e-72FFCP PHASE2:Mm9::chr11:11592840..11592849,+#_ebc4759825edf021fc9767ce9ce29d68p@chr11:11592840..11592849, +
2.39e-66FFCP PHASE1:Hg19::chr9:75772924..75772957,+#_cd066d58b9c9ab7e16d18182b578b7e8p17@ANXA1
2.39e-66FFCP PHASE2:Hg19::chr9:75772924..75772957,+#_cd066d58b9c9ab7e16d18182b578b7e8p17@ANXA1
4.66e-66FFCP PHASE2:Hg19::chr20:37493438..37493456,-#_e71795bfb8b50efa10ae5e7e132286bbp@chr20:37493438..37493456, -
4.66e-66FFCP PHASE2:Hg19::chr2:204816181..204816219,-#_e71795bfb8b50efa10ae5e7e132286bbp@chr2:204816181..204816219, -
4.66e-66FFCP PHASE1:Hg19::chr20:37493438..37493456,-#_e71795bfb8b50efa10ae5e7e132286bbp@chr20:37493438..37493456, -
4.66e-66FFCP PHASE1:Hg19::chr11:118209514..118209525,+#_e71795bfb8b50efa10ae5e7e132286bbp@chr11:118209514..118209525, +
4.66e-66FFCP PHASE2:Hg19::chr11:118209514..118209525,+#_e71795bfb8b50efa10ae5e7e132286bbp@chr11:118209514..118209525, +
4.66e-66FFCP PHASE1:Hg19::chr2:204816181..204816219,-#_e71795bfb8b50efa10ae5e7e132286bbp@chr2:204816181..204816219, -
1.05e-65FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_7c191f68dc067e037a8e595809ba496ep@chr14:53242248..53242261, +
1.05e-65FFCP PHASE2:Mm9::chr14:53242248..53242261,+#_7c191f68dc067e037a8e595809ba496ep@chr14:53242248..53242261, +
1.74e-65FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_7c9eaf443995582b946c00b9e9d6befbp4@ENSMUST00000148466, p4@uc008zmw.1
1.74e-65FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_7c9eaf443995582b946c00b9e9d6befbp4@ENSMUST00000148466, p4@uc008zmw.1
2.25e-65FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_2091faff8618b37a4e416079fc4004fdp@chr5:123465978..123465989, -
2.25e-65FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_2091faff8618b37a4e416079fc4004fdp@chr5:123465978..123465989, -
2.25e-65FFCP PHASE2:Mm9::chr15:80403104..80403111,+#_2091faff8618b37a4e416079fc4004fdp10@Grap2
2.25e-65FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_2091faff8618b37a4e416079fc4004fdp@chr1:140069290..140069308, +
2.25e-65FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_2091faff8618b37a4e416079fc4004fdp@chr1:140069290..140069308, +
2.25e-65FFCP PHASE1:Mm9::chr15:80403104..80403111,+#_2091faff8618b37a4e416079fc4004fdp10@Grap2
2.9e-65FFCP PHASE2:Mm9::chr11:46200242..46200255,+#_9f0c637dd3167bc1ed9abb06caa499f8p@chr11:46200242..46200255, +
2.9e-65FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_9f0c637dd3167bc1ed9abb06caa499f8p@chr11:46200242..46200255, +
2.9e-65FFCP PHASE1:Mm9::chr6:41504409..41504422,-#_9f0c637dd3167bc1ed9abb06caa499f8p@chr6:41504409..41504422, -
2.9e-65FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_9f0c637dd3167bc1ed9abb06caa499f8p@chr14:54817583..54817593, -
2.9e-65FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_9f0c637dd3167bc1ed9abb06caa499f8p@chr14:54817583..54817593, -
2.9e-65FFCP PHASE2:Mm9::chr6:41504409..41504422,-#_9f0c637dd3167bc1ed9abb06caa499f8p@chr6:41504409..41504422, -
3.74e-65FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_684b283a1597519120bf1021f73e9ae1p@chr4:32328217..32328228, -
3.74e-65FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_684b283a1597519120bf1021f73e9ae1p@chr4:32328217..32328228, -
6.21e-65FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_007c62f50ee2c9535bb8f68128692734p@chr13:105412781..105412798, +
6.21e-65FFCP PHASE2:Mm9::chr5:123465955..123465966,-#_007c62f50ee2c9535bb8f68128692734p@chr5:123465955..123465966, -
6.21e-65FFCP PHASE2:Mm9::chr11:46200110..46200124,-#_007c62f50ee2c9535bb8f68128692734p@chr11:46200110..46200124, -
6.21e-65FFCP PHASE1:Mm9::chr5:123465955..123465966,-#_007c62f50ee2c9535bb8f68128692734p@chr5:123465955..123465966, -
6.21e-65FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_007c62f50ee2c9535bb8f68128692734p@chr13:105412781..105412798, +
6.21e-65FFCP PHASE1:Mm9::chr11:46200110..46200124,-#_007c62f50ee2c9535bb8f68128692734p@chr11:46200110..46200124, -
1.0e-60FFCP PHASE1:Mm9::chr2:11097490..11097500,+#_57abd1cac5085f6b5ab14fbce739e805p@chr2:11097490..11097500, +
1.0e-60FFCP PHASE2:Mm9::chr2:11097490..11097500,+#_57abd1cac5085f6b5ab14fbce739e805p@chr2:11097490..11097500, +
1.33e-60FFCP PHASE2:Mm9::chr12:70398221..70398232,-#_e1f2c4ccaef2dde9467b22c45064a9a6p@chr12:70398221..70398232, -
1.33e-60FFCP PHASE2:Mm9::chr7:150943007..150943022,+#_e1f2c4ccaef2dde9467b22c45064a9a6p@chr7:150943007..150943022, +
1.33e-60FFCP PHASE1:Mm9::chr5:108160486..108160515,-#_e1f2c4ccaef2dde9467b22c45064a9a6p@chr5:108160486..108160515, -
1.33e-60FFCP PHASE1:Mm9::chr12:70398221..70398232,-#_e1f2c4ccaef2dde9467b22c45064a9a6p@chr12:70398221..70398232, -
1.33e-60FFCP PHASE2:Mm9::chr10:128157769..128157772,-#_e1f2c4ccaef2dde9467b22c45064a9a6p@chr10:128157769..128157772, -
1.33e-60FFCP PHASE2:Mm9::chr5:108160486..108160515,-#_e1f2c4ccaef2dde9467b22c45064a9a6p@chr5:108160486..108160515, -
1.33e-60FFCP PHASE1:Mm9::chr7:150943007..150943022,+#_e1f2c4ccaef2dde9467b22c45064a9a6p@chr7:150943007..150943022, +
1.33e-60FFCP PHASE1:Mm9::chr10:128157769..128157772,-#_e1f2c4ccaef2dde9467b22c45064a9a6p@chr10:128157769..128157772, -
1.77e-60FFCP PHASE2:Mm9::chr14:53414758..53414769,+#_bd41a7c3ebe1039ac23b7c2beed31bbep1@ENSMUST00000103582
1.77e-60FFCP PHASE1:Mm9::chr14:53414758..53414769,+#_bd41a7c3ebe1039ac23b7c2beed31bbep1@ENSMUST00000103582
2.34e-60FFCP PHASE1:Mm9::chr2:73290853..73290866,+#_3f67c5b30f1ef8557e7f914513918cc3p@chr2:73290853..73290866, +
2.34e-60FFCP PHASE2:Mm9::chr2:73290853..73290866,+#_3f67c5b30f1ef8557e7f914513918cc3p@chr2:73290853..73290866, +
4.1e-60FFCP PHASE1:Mm9::chr2:11181142..11181148,-#_ae3634702a12530638fda3aca89a5683p@chr2:11181142..11181148, -
4.1e-60FFCP PHASE2:Mm9::chr1:138476217..138476228,+#_ae3634702a12530638fda3aca89a5683p@chr1:138476217..138476228, +
4.1e-60FFCP PHASE2:Mm9::chr9:14708434..14708444,-#_ae3634702a12530638fda3aca89a5683p8@Folr4
4.1e-60FFCP PHASE1:Mm9::chr9:14708434..14708444,-#_ae3634702a12530638fda3aca89a5683p8@Folr4
4.1e-60FFCP PHASE1:Mm9::chr1:138476217..138476228,+#_ae3634702a12530638fda3aca89a5683p@chr1:138476217..138476228, +
4.1e-60FFCP PHASE2:Mm9::chr2:11181142..11181148,-#_ae3634702a12530638fda3aca89a5683p@chr2:11181142..11181148, -
6.9e-59FFCP PHASE1:Mm9::chrX:54477240..54477286,+#_dde3a39abc14d92ecacc62947495bc64p@chrX:54477240..54477286, +
6.9e-59FFCP PHASE2:Mm9::chr11:87558695..87558707,+#_dde3a39abc14d92ecacc62947495bc64p@chr11:87558695..87558707, +
6.9e-59FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_dde3a39abc14d92ecacc62947495bc64p4@Cd40lg
6.9e-59FFCP PHASE2:Mm9::chrX:54477240..54477286,+#_dde3a39abc14d92ecacc62947495bc64p@chrX:54477240..54477286, +
6.9e-59FFCP PHASE1:Mm9::chr11:87558695..87558707,+#_dde3a39abc14d92ecacc62947495bc64p@chr11:87558695..87558707, +
6.9e-59FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_dde3a39abc14d92ecacc62947495bc64p4@Cd40lg
1.09e-58FFCP PHASE2:Mm9::chr4:32339235..32339263,+#_ca73dd9acd0b91d891900b5a87aaa80cp@chr4:32339235..32339263, +
1.09e-58FFCP PHASE1:Mm9::chr4:32339235..32339263,+#_ca73dd9acd0b91d891900b5a87aaa80cp@chr4:32339235..32339263, +
1.71e-58FFCP PHASE1:Mm9::chr19:10904395..10904400,-#_e5765c6249e32bf5c9e390c5b32d6a54p5@Cd6
1.71e-58FFCP PHASE2:Mm9::chr19:10904395..10904400,-#_e5765c6249e32bf5c9e390c5b32d6a54p5@Cd6
1.71e-58FFCP PHASE2:Mm9::chr16:23175296..23175310,+#_e5765c6249e32bf5c9e390c5b32d6a54p3@uc007ytl.1
1.71e-58FFCP PHASE1:Mm9::chr16:23175296..23175310,+#_e5765c6249e32bf5c9e390c5b32d6a54p3@uc007ytl.1
2.15e-58FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_504285c42e9fea16c1ca8b73d243196fp1@ENSMUST00000103733
2.15e-58FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_504285c42e9fea16c1ca8b73d243196fp1@ENSMUST00000103733
2.69e-58FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_c562dd4d4e7461a83945976691041d64p@chr4:32339511..32339518, +
2.69e-58FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_c562dd4d4e7461a83945976691041d64p3@Tnfrsf25
2.69e-58FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_c562dd4d4e7461a83945976691041d64p3@Tnfrsf25
2.69e-58FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_c562dd4d4e7461a83945976691041d64p@chr4:32339511..32339518, +
3.38e-58FFCP PHASE2:Mm9::chr6:48656532..48656548,+#_d226a1fbdb8c8bdb90deb2a759dfa368p@chr6:48656532..48656548, +
3.38e-58FFCP PHASE1:Mm9::chr6:48656532..48656548,+#_d226a1fbdb8c8bdb90deb2a759dfa368p@chr6:48656532..48656548, +
3.91e-58FFCP PHASE2:Mm9::chr14:54794275..54794301,+#_89f2c2991418f157ae597eeaedbfead7p@chr14:54794275..54794301, +
3.91e-58FFCP PHASE1:Mm9::chr10:76993352..76993362,+#_89f2c2991418f157ae597eeaedbfead7p@chr10:76993352..76993362, +

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