CL:0000404: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A cell that initiates an electrical signal and passes that signal to another cell." [FB:ma] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000404 | |||
|is_a=CL:0000211 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=electrically signaling cell | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 16:33, 12 September 2014
| Name: | electrically signaling cell |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A cell that initiates an electrical signal and passes that signal to another cell." [FB:ma] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000211(electrically active cell) |
|---|
Children
| is a: | CL:0000540 (neuron) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11489-119E4 (Mouse Neurons - substantia nigra, donor4)
- 11490-119E5 (Mouse Neurons - substantia nigra, donor5)
- 11494-119E9 (Neurons, donor1)
- 11495-119F1
- 11574-120E8 (Neurons, donor2)
- 11575-120E9
- 11636-122C7 (Mouse Granule cells, donor3)
- 11642-122D4
- 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
- 11644-122D6 (Mouse Neurons - hippocampal, donor3)
... further results Mouse (Mus musculus)
- 11489-119E4 (Mouse Neurons - substantia nigra, donor4)
- 11490-119E5 (Mouse Neurons - substantia nigra, donor5)
- 11494-119E9 (Neurons, donor1)
- 11495-119F1
- 11574-120E8 (Neurons, donor2)
- 11575-120E9
- 11636-122C7 (Mouse Granule cells, donor3)
- 11642-122D4
- 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
- 11644-122D6 (Mouse Neurons - hippocampal, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000404 (electrically signaling cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.83e-98 | FFCP PHASE1:Hg19::chr8:494169..494176,+#_7a4fce9049e55cf5804e487504c1be41 | p@chr8:494169..494176, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr6:121759714..121759721,+#_7a4fce9049e55cf5804e487504c1be41 | p@chr6:121759714..121759721, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr1:178235815..178235824,-#_7a4fce9049e55cf5804e487504c1be41 | p@chr1:178235815..178235824, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr7:89853761..89853768,+#_7a4fce9049e55cf5804e487504c1be41 | p@chr7:89853761..89853768, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr8:494169..494176,+#_7a4fce9049e55cf5804e487504c1be41 | p@chr8:494169..494176, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr6:121759714..121759721,+#_7a4fce9049e55cf5804e487504c1be41 | p@chr6:121759714..121759721, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr7:93269596..93269602,+#_7a4fce9049e55cf5804e487504c1be41 | p@chr7:93269596..93269602, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr1:178235815..178235824,-#_7a4fce9049e55cf5804e487504c1be41 | p@chr1:178235815..178235824, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr7:89853761..89853768,+#_7a4fce9049e55cf5804e487504c1be41 | p@chr7:89853761..89853768, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr7:93269596..93269602,+#_7a4fce9049e55cf5804e487504c1be41 | p@chr7:93269596..93269602, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr3:162430587..162430591,+#_7a4fce9049e55cf5804e487504c1be41 | p@chr3:162430587..162430591, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr12:23738971..23738975,+#_7a4fce9049e55cf5804e487504c1be41 | p@chr12:23738971..23738975, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr10:74804784..74804793,-#_7a4fce9049e55cf5804e487504c1be41 | p@chr10:74804784..74804793, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr12:23738971..23738975,+#_7a4fce9049e55cf5804e487504c1be41 | p@chr12:23738971..23738975, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr10:74804784..74804793,-#_7a4fce9049e55cf5804e487504c1be41 | p@chr10:74804784..74804793, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr3:162430587..162430591,+#_7a4fce9049e55cf5804e487504c1be41 | p@chr3:162430587..162430591, + |
| 6.82e-78 | FFCP PHASE2:Hg19::chr21:33976809..33976828,-#_ff9a98c5a27b14e2f5240d4120d34087 | p9@C21orf59 |
| 6.82e-78 | FFCP PHASE1:Hg19::chr21:33976809..33976828,-#_ff9a98c5a27b14e2f5240d4120d34087 | p9@C21orf59 |
| 2.58e-74 | FFCP PHASE2:Hg19::chr7:125557914..125557920,+#_aedfdac4fe708fdd50dd8b4bc69acb80 | p1@ENST00000411856 |
| 2.58e-74 | FFCP PHASE2:Hg19::chr1:232254205..232254216,+#_aedfdac4fe708fdd50dd8b4bc69acb80 | p@chr1:232254205..232254216, + |
| 2.58e-74 | FFCP PHASE1:Hg19::chr1:232254205..232254216,+#_aedfdac4fe708fdd50dd8b4bc69acb80 | p@chr1:232254205..232254216, + |
| 2.58e-74 | FFCP PHASE2:Hg19::chr3:65939393..65939412,+#_aedfdac4fe708fdd50dd8b4bc69acb80 | p@chr3:65939393..65939412, + |
| 2.58e-74 | FFCP PHASE1:Hg19::chr4:187163434..187163439,+#_aedfdac4fe708fdd50dd8b4bc69acb80 | p@chr4:187163434..187163439, + |
| 2.58e-74 | FFCP PHASE1:Hg19::chr7:125557914..125557920,+#_aedfdac4fe708fdd50dd8b4bc69acb80 | p1@ENST00000411856 |
| 2.58e-74 | FFCP PHASE2:Hg19::chr4:113571661..113571692,-#_aedfdac4fe708fdd50dd8b4bc69acb80 | p1@ENST00000510655 |
| 2.58e-74 | FFCP PHASE2:Hg19::chr2:210164412..210164415,+#_aedfdac4fe708fdd50dd8b4bc69acb80 | p@chr2:210164412..210164415, + |
| 2.58e-74 | FFCP PHASE1:Hg19::chr2:210164412..210164415,+#_aedfdac4fe708fdd50dd8b4bc69acb80 | p@chr2:210164412..210164415, + |
| 2.58e-74 | FFCP PHASE1:Hg19::chr3:65939393..65939412,+#_aedfdac4fe708fdd50dd8b4bc69acb80 | p@chr3:65939393..65939412, + |
| 2.58e-74 | FFCP PHASE1:Hg19::chr4:113571661..113571692,-#_aedfdac4fe708fdd50dd8b4bc69acb80 | p1@ENST00000510655 |
| 2.58e-74 | FFCP PHASE2:Hg19::chr4:187163434..187163439,+#_aedfdac4fe708fdd50dd8b4bc69acb80 | p@chr4:187163434..187163439, + |
| 3.31e-74 | FFCP PHASE1:Hg19::chr13:93868779..93868791,+#_80a0bc0a0f3d66dce6b82c95ba08b25f | p@chr13:93868779..93868791, + |
| 3.31e-74 | FFCP PHASE2:Hg19::chr13:93868779..93868791,+#_80a0bc0a0f3d66dce6b82c95ba08b25f | p@chr13:93868779..93868791, + |
| 4.26e-74 | FFCP PHASE1:Hg19::chr6:132234089..132234094,+#_48433c7ac8084423042299f3c6cd59a7 | p@chr6:132234089..132234094, + |
| 4.26e-74 | FFCP PHASE2:Hg19::chr6:132234089..132234094,+#_48433c7ac8084423042299f3c6cd59a7 | p@chr6:132234089..132234094, + |
| 5.47e-74 | FFCP PHASE1:Hg19::chrX:16141567..16141572,+#_1aefb9df15a8ca515e47682e93ede685 | p4@GRPR |
| 5.47e-74 | FFCP PHASE1:Hg19::chr13:54688155..54688160,-#_1aefb9df15a8ca515e47682e93ede685 | p@chr13:54688155..54688160, - |
| 5.47e-74 | FFCP PHASE2:Hg19::chrX:16141567..16141572,+#_1aefb9df15a8ca515e47682e93ede685 | p4@GRPR |
| 5.47e-74 | FFCP PHASE2:Hg19::chr13:54688155..54688160,-#_1aefb9df15a8ca515e47682e93ede685 | p@chr13:54688155..54688160, - |
| 2.2e-70 | FFCP PHASE1:Mm9::chr8:125944624..125944663,+#_5dc06c50278bc736282caa99ac9ae81d | p@chr8:125944624..125944663, + |
| 2.2e-70 | FFCP PHASE2:Mm9::chr8:125944624..125944663,+#_5dc06c50278bc736282caa99ac9ae81d | p@chr8:125944624..125944663, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr4:150954096..150954098,+#_e217b2cac16fc9dd8b2cb2e47bff01a9 | p@chr4:150954096..150954098, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr13:51745257..51745261,+#_e217b2cac16fc9dd8b2cb2e47bff01a9 | p@chr13:51745257..51745261, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chrY:28817276..28817283,-#_e217b2cac16fc9dd8b2cb2e47bff01a9 | p@chrY:28817276..28817283, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr19:33542309..33542310,+#_e217b2cac16fc9dd8b2cb2e47bff01a9 | p1@ENST00000463585 |
| 2.83e-66 | FFCP PHASE1:Hg19::chr15:53409038..53409040,+#_e217b2cac16fc9dd8b2cb2e47bff01a9 | p@chr15:53409038..53409040, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr4:188918405..188918406,+#_e217b2cac16fc9dd8b2cb2e47bff01a9 | p@chr4:188918405..188918406, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr19:33542309..33542310,+#_e217b2cac16fc9dd8b2cb2e47bff01a9 | p1@ENST00000463585 |
| 2.83e-66 | FFCP PHASE2:Hg19::chr4:188918405..188918406,+#_e217b2cac16fc9dd8b2cb2e47bff01a9 | p@chr4:188918405..188918406, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr15:53409038..53409040,+#_e217b2cac16fc9dd8b2cb2e47bff01a9 | p@chr15:53409038..53409040, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr20:31396411..31396416,+#_e217b2cac16fc9dd8b2cb2e47bff01a9 | p15@DNMT3B |
| 2.83e-66 | FFCP PHASE1:Hg19::chr4:150954096..150954098,+#_e217b2cac16fc9dd8b2cb2e47bff01a9 | p@chr4:150954096..150954098, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr13:51745257..51745261,+#_e217b2cac16fc9dd8b2cb2e47bff01a9 | p@chr13:51745257..51745261, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chrY:28817276..28817283,-#_e217b2cac16fc9dd8b2cb2e47bff01a9 | p@chrY:28817276..28817283, - |
| 2.83e-66 | FFCP PHASE1:Hg19::chr20:31396411..31396416,+#_e217b2cac16fc9dd8b2cb2e47bff01a9 | p15@DNMT3B |
| 8.15e-60 | FFCP PHASE2:Hg19::chr9:76707423..76707428,+#_6e50a6ff06273753b2657cc6a4cb0efa | p@chr9:76707423..76707428, + |
| 8.15e-60 | FFCP PHASE1:Hg19::chr9:12948720..12948724,+#_6e50a6ff06273753b2657cc6a4cb0efa | p@chr9:12948720..12948724, + |
| 8.15e-60 | FFCP PHASE1:Hg19::chr9:76707423..76707428,+#_6e50a6ff06273753b2657cc6a4cb0efa | p@chr9:76707423..76707428, + |
| 8.15e-60 | FFCP PHASE2:Hg19::chr9:100199938..100199951,-#_6e50a6ff06273753b2657cc6a4cb0efa | p@chr9:100199938..100199951, - |
| 8.15e-60 | FFCP PHASE1:Hg19::chr9:100199938..100199951,-#_6e50a6ff06273753b2657cc6a4cb0efa | p@chr9:100199938..100199951, - |
| 8.15e-60 | FFCP PHASE2:Hg19::chr9:12948720..12948724,+#_6e50a6ff06273753b2657cc6a4cb0efa | p@chr9:12948720..12948724, + |
| 9.96e-60 | FFCP PHASE1:Hg19::chr12:132280681..132280688,+#_6fd419d5750dfd7a69f2d74146cbc8d3 | p3@SFSWAP |
| 9.96e-60 | FFCP PHASE2:Hg19::chr12:132280681..132280688,+#_6fd419d5750dfd7a69f2d74146cbc8d3 | p3@SFSWAP |
| 1.22e-59 | FFCP PHASE1:Hg19::chr1:114574998..114575000,+#_2918a766e2f12316394a69c6faae5cab | p@chr1:114574998..114575000, + |
| 1.22e-59 | FFCP PHASE1:Hg19::chr5:123833031..123833035,+#_2918a766e2f12316394a69c6faae5cab | p@chr5:123833031..123833035, + |
| 1.22e-59 | FFCP PHASE2:Hg19::chr12:7942020..7942031,+#_2918a766e2f12316394a69c6faae5cab | p2@NANOG |
| 1.22e-59 | FFCP PHASE1:Hg19::chr12:7942020..7942031,+#_2918a766e2f12316394a69c6faae5cab | p2@NANOG |
| 1.22e-59 | FFCP PHASE2:Hg19::chr4:111540901..111540905,+#_2918a766e2f12316394a69c6faae5cab | p@chr4:111540901..111540905, + |
| 1.22e-59 | FFCP PHASE2:Hg19::chr1:114574998..114575000,+#_2918a766e2f12316394a69c6faae5cab | p@chr1:114574998..114575000, + |
| 1.22e-59 | FFCP PHASE1:Hg19::chr4:111540901..111540905,+#_2918a766e2f12316394a69c6faae5cab | p@chr4:111540901..111540905, + |
| 1.22e-59 | FFCP PHASE2:Hg19::chr5:123833031..123833035,+#_2918a766e2f12316394a69c6faae5cab | p@chr5:123833031..123833035, + |
| 1.49e-59 | FFCP PHASE2:Hg19::chr2:76920664..76920667,+#_4505be99477a59ab9e1c3cdf05e281ad | p@chr2:76920664..76920667, + |
| 1.49e-59 | FFCP PHASE1:Hg19::chr2:76920664..76920667,+#_4505be99477a59ab9e1c3cdf05e281ad | p@chr2:76920664..76920667, + |
| 1.49e-59 | FFCP PHASE1:Hg19::chr14:84428225..84428229,+#_4505be99477a59ab9e1c3cdf05e281ad | p@chr14:84428225..84428229, + |
| 1.49e-59 | FFCP PHASE1:Hg19::chr7:99986543..99986546,+#_4505be99477a59ab9e1c3cdf05e281ad | p@chr7:99986543..99986546, + |
| 1.49e-59 | FFCP PHASE2:Hg19::chr7:99986543..99986546,+#_4505be99477a59ab9e1c3cdf05e281ad | p@chr7:99986543..99986546, + |
| 1.49e-59 | FFCP PHASE2:Hg19::chr14:84428225..84428229,+#_4505be99477a59ab9e1c3cdf05e281ad | p@chr14:84428225..84428229, + |
| 1.82e-59 | FFCP PHASE1:Hg19::chr11:27657270..27657275,-#_83da7fdc72c9205eb84bfae88abc467e | p@chr11:27657270..27657275, - |
| 1.82e-59 | FFCP PHASE2:Hg19::chr11:27657270..27657275,-#_83da7fdc72c9205eb84bfae88abc467e | p@chr11:27657270..27657275, - |
| 2.72e-59 | FFCP PHASE2:Hg19::chr4:170861392..170861432,+#_dc1c964038adfa8ff07c3e4eca58e242 | p@chr4:170861392..170861432, + |
| 2.72e-59 | FFCP PHASE1:Hg19::chr4:170861392..170861432,+#_dc1c964038adfa8ff07c3e4eca58e242 | p@chr4:170861392..170861432, + |
| 5.43e-59 | FFCP PHASE1:Hg19::chr12:86727911..86727925,-#_ff5f8d63be533235a29d1e6643b6a3a2 | p@chr12:86727911..86727925, - |
| 5.43e-59 | FFCP PHASE2:Hg19::chr12:86727911..86727925,-#_ff5f8d63be533235a29d1e6643b6a3a2 | p@chr12:86727911..86727925, - |
| 1.11e-58 | FFCP PHASE1:Mm9::chr7:109167666..109167667,+#_9732a06ae337f545eef098f5f383504b | p@chr7:109167666..109167667, + |
| 1.11e-58 | FFCP PHASE2:Mm9::chr7:109167666..109167667,+#_9732a06ae337f545eef098f5f383504b | p@chr7:109167666..109167667, + |
| 1.36e-58 | FFCP PHASE1:Hg19::chr1:213164012..213164023,+#_ce800823b84950f1b35e05b4d46286cf | p@chr1:213164012..213164023, + |
| 1.36e-58 | FFCP PHASE2:Hg19::chr1:213164012..213164023,+#_ce800823b84950f1b35e05b4d46286cf | p@chr1:213164012..213164023, + |
| 2.28e-56 | FFCP PHASE2:Hg19::chr7:23146271..23146285,+#_1f41c9336f6aca7c7b61d04ffdb0f0ae | p4@KLHL7 |
| 2.28e-56 | FFCP PHASE1:Hg19::chr7:23146271..23146285,+#_1f41c9336f6aca7c7b61d04ffdb0f0ae | p4@KLHL7 |
| 8.29e-55 | FFCP PHASE2:Mm9::chr14:26427427..26427439,+#_625d0646f1b88c34201276ac210b86d5 | p22@Zmiz1 |
| 8.29e-55 | FFCP PHASE1:Mm9::chr14:26427427..26427439,+#_625d0646f1b88c34201276ac210b86d5 | p22@Zmiz1 |
| 2.41e-54 | FFCP PHASE2:Mm9::chr13:9279895..9279899,+#_6007c46356a34061a0bd8c64cd52997f | p@chr13:9279895..9279899, + |
| 2.41e-54 | FFCP PHASE1:Mm9::chr13:9279895..9279899,+#_6007c46356a34061a0bd8c64cd52997f | p@chr13:9279895..9279899, + |
| 7.68e-54 | FFCP PHASE2:Hg19::chr1:33231268..33231284,+#_279aaf4539db73f37db227040859a190 | p20@KIAA1522 |
| 7.68e-54 | FFCP PHASE1:Hg19::chr1:33231268..33231284,+#_279aaf4539db73f37db227040859a190 | p20@KIAA1522 |
| 4.63e-53 | FFCP PHASE2:Hg19::chr17:25672542..25672555,-#_ca736aa5e72f6754e3d241534caf47f3 | p@chr17:25672542..25672555, - |
| 4.63e-53 | FFCP PHASE1:Hg19::chr17:25672542..25672555,-#_ca736aa5e72f6754e3d241534caf47f3 | p@chr17:25672542..25672555, - |
| 1.37e-52 | FFCP PHASE2:Hg19::chr19:55823957..55823960,-#_43601aeec73314a0d0466a2a1ecb9d2b | p@chr19:55823957..55823960, - |
| 1.37e-52 | FFCP PHASE1:Hg19::chr19:55823957..55823960,-#_43601aeec73314a0d0466a2a1ecb9d2b | p@chr19:55823957..55823960, - |
| 1.31e-50 | FFCP PHASE1:Mm9::chr8:125944694..125944740,+#_cdacd3ac332f4b13120cae34ea1aeffe | p@chr8:125944694..125944740, + |
| 1.31e-50 | FFCP PHASE2:Mm9::chr8:125944694..125944740,+#_cdacd3ac332f4b13120cae34ea1aeffe | p@chr8:125944694..125944740, + |
