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{{CL
{{CL
|id=CL:0000213
|alt_id=
|name=lining cell
|namespace=cell
|def="A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism." [JB:jb]
|xref=
|is_a=CL:0000215
|synonym="boundary cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism." [JB:jb]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000213
|is_a=CL:0000215
|is_obsolete=
|located_in=
|located_in=
|name=lining cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="boundary cell" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:31, 12 September 2014

Name:lining cell
Namespace:FANTOM
Definition:"A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism." [JB:jb]
Synonyms: "boundary cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000215(barrier cell)



Children


is a:CL:0000077 (mesothelial cell),CL:0000115 (endothelial cell),CL:0000214 (synovial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000213 (lining cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.38e-90FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_072930dc9969cd3fef8b3e480eb8d3b5p@chr6:3753188..3753192, -
9.38e-90FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_072930dc9969cd3fef8b3e480eb8d3b5p@chr6:3753188..3753192, -
3.07e-86FFCP PHASE1:Mm9::chr18:60398371..60398393,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:60398371..60398393, -
3.07e-86FFCP PHASE1:Mm9::chr17:34796428..34796430,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:34796428..34796430, -
3.07e-86FFCP PHASE2:Mm9::chr2:169549462..169549477,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr2:169549462..169549477, +
3.07e-86FFCP PHASE2:Mm9::chr12:88237840..88237851,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:88237840..88237851, -
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:25530071..25530072, +
3.07e-86FFCP PHASE2:Mm9::chr2:84756280..84756286,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr17:12388232..12388237,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:12388232..12388237, +
3.07e-86FFCP PHASE1:Mm9::chr12:88237840..88237851,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:88237840..88237851, -
3.07e-86FFCP PHASE1:Mm9::chr10:85585991..85586025,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:85585991..85586025, -
3.07e-86FFCP PHASE2:Mm9::chr15:88669906..88669914,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:88669906..88669914, +
3.07e-86FFCP PHASE2:Mm9::chr15:59435855..59435878,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:59435855..59435878, -
3.07e-86FFCP PHASE1:Mm9::chr17:48822294..48822295,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:48822294..48822295, -
3.07e-86FFCP PHASE1:Mm9::chr4:62009160..62009164,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr4:62009160..62009164, -
3.07e-86FFCP PHASE1:Mm9::chr6:51831254..51831256,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr6:51831254..51831256, -
3.07e-86FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:68437375..68437378, +
3.07e-86FFCP PHASE1:Mm9::chr8:3311867..3311873,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:3311867..3311873, +
3.07e-86FFCP PHASE1:Mm9::chr11:54785454..54785456,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:54785454..54785456, -
3.07e-86FFCP PHASE1:Mm9::chr10:94580525..94580530,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:94580525..94580530, +
3.07e-86FFCP PHASE1:Mm9::chr13:113550715..113550722,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:113550715..113550722, -
3.07e-86FFCP PHASE1:Mm9::chr8:87745380..87745385,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:87745380..87745385, +
3.07e-86FFCP PHASE2:Mm9::chr11:109223779..109223789,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:109223779..109223789, -
3.07e-86FFCP PHASE1:Mm9::chr11:115280630..115280662,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:115280630..115280662, +
3.07e-86FFCP PHASE2:Mm9::chr6:34549876..34549892,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr6:34549876..34549892, -
3.07e-86FFCP PHASE1:Mm9::chr12:86691575..86691580,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:86691575..86691580, -
3.07e-86FFCP PHASE1:Mm9::chr17:28107053..28107062,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:28107053..28107062, -
3.07e-86FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:48822294..48822295, -
3.07e-86FFCP PHASE1:Mm9::chr17:35093764..35093773,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35093764..35093773, -
3.07e-86FFCP PHASE2:Mm9::chr17:28107053..28107062,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:28107053..28107062, -
3.07e-86FFCP PHASE1:Mm9::chr8:86713876..86713879,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:86713876..86713879, +
3.07e-86FFCP PHASE2:Mm9::chr1:186559285..186559288,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr1:186559285..186559288, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585949..85585969,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:85585949..85585969, -
3.07e-86FFCP PHASE1:Mm9::chr12:8400090..8400093,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:8400090..8400093, +
3.07e-86FFCP PHASE1:Mm9::chrX:166418658..166418683,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chrX:166418658..166418683, +
3.07e-86FFCP PHASE2:Mm9::chr8:11183699..11183703,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:11183699..11183703, -
3.07e-86FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:86691575..86691580, -
3.07e-86FFCP PHASE1:Mm9::chr15:82209805..82209851,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:82209805..82209851, +
3.07e-86FFCP PHASE1:Mm9::chr11:88890706..88890745,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:88890706..88890745, +
3.07e-86FFCP PHASE2:Mm9::chr11:88890706..88890745,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:88890706..88890745, +
3.07e-86FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:39513150..39513152, +
3.07e-86FFCP PHASE1:Mm9::chr13:100000226..100000230,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr10:8586393..8586401,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:8586393..8586401, +
3.07e-86FFCP PHASE1:Mm9::chr18:47491114..47491123,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:47491114..47491123, +
3.07e-86FFCP PHASE2:Mm9::chr6:48398664..48398684,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr6:48398664..48398684, -
3.07e-86FFCP PHASE1:Mm9::chr2:129407463..129407468,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr2:129407463..129407468, -
3.07e-86FFCP PHASE2:Mm9::chr16:85801525..85801529,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep6@Adamts1
3.07e-86FFCP PHASE2:Mm9::chr4:43407825..43407830,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr8:3311867..3311873,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:3311867..3311873, +
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr1:66883923..66883955, -
3.07e-86FFCP PHASE1:Mm9::chr18:35900327..35900366,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:35900327..35900366, +
3.07e-86FFCP PHASE2:Mm9::chr18:4336287..4336296,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep8@Map3k8
3.07e-86FFCP PHASE1:Mm9::chr7:52781901..52781904,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr7:52781901..52781904, +
3.07e-86FFCP PHASE2:Mm9::chr18:35881716..35881727,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:35881716..35881727, -
3.07e-86FFCP PHASE2:Mm9::chr18:47491114..47491123,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr18:47491114..47491123, +
3.07e-86FFCP PHASE1:Mm9::chr16:85801525..85801529,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep6@Adamts1
3.07e-86FFCP PHASE1:Mm9::chr8:114123814..114123821,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:114123814..114123821, -
3.07e-86FFCP PHASE1:Mm9::chr1:137570295..137570315,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr1:137570295..137570315, +
3.07e-86FFCP PHASE2:Mm9::chr17:35096519..35096524,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35096519..35096524, +
3.07e-86FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:86713876..86713879, +
3.07e-86FFCP PHASE1:Mm9::chr10:93819538..93819549,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:93819538..93819549, +
3.07e-86FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr17:35106363..35106372,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35106363..35106372, -
3.07e-86FFCP PHASE1:Mm9::chr11:109223756..109223764,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:109223756..109223764, -
3.07e-86FFCP PHASE2:Mm9::chr15:82207617..82207621,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:82207617..82207621, +
3.07e-86FFCP PHASE1:Mm9::chr6:48398664..48398684,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr6:48398664..48398684, -
3.07e-86FFCP PHASE1:Mm9::chr15:88669906..88669914,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:88669906..88669914, +
3.07e-86FFCP PHASE1:Mm9::chr5:64344878..64344887,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:64344878..64344887, -
3.07e-86FFCP PHASE1:Mm9::chr17:34798555..34798562,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:34798555..34798562, +
3.07e-86FFCP PHASE1:Mm9::chr13:113053257..113053258,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr13:113053257..113053258, +
3.07e-86FFCP PHASE1:Mm9::chr16:30944451..30944485,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr16:30944451..30944485, +
3.07e-86FFCP PHASE1:Mm9::chr17:67870501..67870507,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:67870501..67870507, +
3.07e-86FFCP PHASE1:Mm9::chr12:81955014..81955018,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:81955014..81955018, +
3.07e-86FFCP PHASE1:Mm9::chr9:116223548..116223551,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr9:116223548..116223551, +
3.07e-86FFCP PHASE2:Mm9::chr8:111108947..111108951,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr8:111108947..111108951, +
3.07e-86FFCP PHASE1:Mm9::chr11:119254092..119254100,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:119254092..119254100, -
3.07e-86FFCP PHASE1:Mm9::chr10:85586219..85586227,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr10:85586219..85586227, +
3.07e-86FFCP PHASE2:Mm9::chr5:64344878..64344887,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:64344878..64344887, -
3.07e-86FFCP PHASE1:Mm9::chr9:42915101..42915106,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr9:42915101..42915106, -
3.07e-86FFCP PHASE2:Mm9::chr11:107196799..107196814,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:107196799..107196814, +
3.07e-86FFCP PHASE1:Mm9::chr7:118133901..118133904,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr7:118133901..118133904, -
3.07e-86FFCP PHASE2:Mm9::chr12:100752983..100752984,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr12:100752983..100752984, +
3.07e-86FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr6:15678147..15678149,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr6:15678147..15678149, -
3.07e-86FFCP PHASE1:Mm9::chr16:91441786..91441787,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr16:91441786..91441787, -
3.07e-86FFCP PHASE1:Mm9::chr11:117737077..117737096,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr11:117737077..117737096, -
3.07e-86FFCP PHASE2:Mm9::chr6:91441074..91441080,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr6:91441074..91441080, -
3.07e-86FFCP PHASE2:Mm9::chr17:34796428..34796430,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:34796428..34796430, -
3.07e-86FFCP PHASE2:Mm9::chrX:166418658..166418683,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chrX:166418658..166418683, +
3.07e-86FFCP PHASE1:Mm9::chr3:9705000..9705004,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep4@Pag1
3.07e-86FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr15:32178407..32178408, -
3.07e-86FFCP PHASE1:Mm9::chr18:4336287..4336296,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep8@Map3k8
3.07e-86FFCP PHASE1:Mm9::chr5:75375903..75375931,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr5:75375903..75375931, +
3.07e-86FFCP PHASE2:Mm9::chr3:104857794..104857802,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr3:104857794..104857802, -
3.07e-86FFCP PHASE1:Mm9::chr16:11009028..11009039,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep4@Gm4262
3.07e-86FFCP PHASE1:Mm9::chr7:109031260..109031268,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr7:109031260..109031268, +
3.07e-86FFCP PHASE1:Mm9::chr17:35945332..35945335,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35945332..35945335, +
3.07e-86FFCP PHASE1:Mm9::chr6:91441074..91441080,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr6:91441074..91441080, -
3.07e-86FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr17:35094068..35094092, -
3.07e-86FFCP PHASE1:Mm9::chr6:129180613..129180616,+#_5b0c75943c8b43fa20ca5af38a0f0d0ep@chr6:129180613..129180616, +

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