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{{UBERON
{{UBERON
|id=UBERON:0008001
|alt_id=
|name=irregular bone
|namespace=
|def="The irregular bones are bones which, from their peculiar form, cannot be grouped as long bone, short bone, flat bone or sesamoid bone. Irregular bones serve various purposes in the body, such as protection of nervous tissue, affording multiple anchor points for skeletal muscle attachment (as with the sacrum), and maintaining pharynx and trachea support, and tongue attachment (such as the hyoid bone). They consist of cancellous tissue enclosed within a thin layer of compact bone. The irregular bones are: the vertebrC&, sacrum, coccyx, temporal, sphenoid, ethmoid, zygomatic, maxilla, mandible, palatine, inferior nasal concha, and hyoid." [Wikipedia:Irregular_bone]
|xref=FMA:7477;;ncithesaurus:Irregular_Bone;;SCTID:421560006
|is_a=UBERON:0001474
|synonym="os irregulare" EXACT [];;"os irregulare" RELATED LATIN [Wikipedia:Irregular_bone]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The irregular bones are bones which, from their peculiar form, cannot be grouped as long bone, short bone, flat bone or sesamoid bone. Irregular bones serve various purposes in the body, such as protection of nervous tissue, affording multiple anchor points for skeletal muscle attachment (as with the sacrum), and maintaining pharynx and trachea support, and tongue attachment (such as the hyoid bone). They consist of cancellous tissue enclosed within a thin layer of compact bone. The irregular bones are: the vertebrC&, sacrum, coccyx, temporal, sphenoid, ethmoid, zygomatic, maxilla, mandible, palatine, inferior nasal concha, and hyoid." [Wikipedia:Irregular_bone]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0008001
|is_a=UBERON:0001474
|is_obsolete=
|located_in=
|located_in=
|name=irregular bone
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="os irregulare" EXACT [];;"os irregulare" RELATED LATIN [Wikipedia:Irregular_bone]
|union_of=
|xref=FMA:7477;;ncithesaurus:Irregular_Bone;;SCTID:421560006
}}
}}

Latest revision as of 18:03, 12 September 2014

Name:irregular bone
Namespace:FANTOM
Definition:"The irregular bones are bones which, from their peculiar form, cannot be grouped as long bone, short bone, flat bone or sesamoid bone. Irregular bones serve various purposes in the body, such as protection of nervous tissue, affording multiple anchor points for skeletal muscle attachment (as with the sacrum), and maintaining pharynx and trachea support, and tongue attachment (such as the hyoid bone). They consist of cancellous tissue enclosed within a thin layer of compact bone. The irregular bones are: the vertebrC&, sacrum, coccyx, temporal, sphenoid, ethmoid, zygomatic, maxilla, mandible, palatine, inferior nasal concha, and hyoid." [Wikipedia:Irregular_bone]
Xrefs:
links:

FMA:7477
ncithesaurus:Irregular_Bone

SCTID:421560006
Synonyms: "os irregulare" EXACT []
"os irregulare" RELATED LATIN [Wikipedia:Irregular_bone]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001474(bone element)



Children

is a:UBERON:0002412 (vertebra),UBERON:0008193 (pneumatized bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008001 (irregular bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_3d0aa204525e357a304db252601cb34cp14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_3d0aa204525e357a304db252601cb34cp14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_c4ba0b9b9d1cb23016106544f787e391p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_c4ba0b9b9d1cb23016106544f787e391p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_c4ba0b9b9d1cb23016106544f787e391p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_c4ba0b9b9d1cb23016106544f787e391p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_c4ba0b9b9d1cb23016106544f787e391p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_c4ba0b9b9d1cb23016106544f787e391p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_c4ba0b9b9d1cb23016106544f787e391p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_c4ba0b9b9d1cb23016106544f787e391p13@C17orf67
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_18faca4318141a76df481e738d52a615p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_18faca4318141a76df481e738d52a615p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_18faca4318141a76df481e738d52a615p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_18faca4318141a76df481e738d52a615p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_18faca4318141a76df481e738d52a615p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_18faca4318141a76df481e738d52a615p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_18faca4318141a76df481e738d52a615p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_18faca4318141a76df481e738d52a615p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_18faca4318141a76df481e738d52a615p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_18faca4318141a76df481e738d52a615p1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_18faca4318141a76df481e738d52a615p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_18faca4318141a76df481e738d52a615p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_18faca4318141a76df481e738d52a615p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_18faca4318141a76df481e738d52a615p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_18faca4318141a76df481e738d52a615p4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_18faca4318141a76df481e738d52a615p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_18faca4318141a76df481e738d52a615p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_18faca4318141a76df481e738d52a615p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_18faca4318141a76df481e738d52a615p21@Espn
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_18faca4318141a76df481e738d52a615p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_18faca4318141a76df481e738d52a615p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_18faca4318141a76df481e738d52a615p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_18faca4318141a76df481e738d52a615p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_18faca4318141a76df481e738d52a615p5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_18faca4318141a76df481e738d52a615p15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_18faca4318141a76df481e738d52a615p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_18faca4318141a76df481e738d52a615p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_18faca4318141a76df481e738d52a615p1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_18faca4318141a76df481e738d52a615p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_18faca4318141a76df481e738d52a615p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_18faca4318141a76df481e738d52a615p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_18faca4318141a76df481e738d52a615p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_18faca4318141a76df481e738d52a615p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_18faca4318141a76df481e738d52a615p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_18faca4318141a76df481e738d52a615p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_18faca4318141a76df481e738d52a615p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_18faca4318141a76df481e738d52a615p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_18faca4318141a76df481e738d52a615p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_18faca4318141a76df481e738d52a615p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_18faca4318141a76df481e738d52a615p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_18faca4318141a76df481e738d52a615p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_18faca4318141a76df481e738d52a615p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_18faca4318141a76df481e738d52a615p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_18faca4318141a76df481e738d52a615p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_18faca4318141a76df481e738d52a615p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_18faca4318141a76df481e738d52a615p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_18faca4318141a76df481e738d52a615p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_18faca4318141a76df481e738d52a615p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_18faca4318141a76df481e738d52a615p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_18faca4318141a76df481e738d52a615p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_18faca4318141a76df481e738d52a615p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_18faca4318141a76df481e738d52a615p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_18faca4318141a76df481e738d52a615p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_18faca4318141a76df481e738d52a615p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_18faca4318141a76df481e738d52a615p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_18faca4318141a76df481e738d52a615p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_18faca4318141a76df481e738d52a615p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_18faca4318141a76df481e738d52a615p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_18faca4318141a76df481e738d52a615p2@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_18faca4318141a76df481e738d52a615p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_18faca4318141a76df481e738d52a615p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_18faca4318141a76df481e738d52a615p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_18faca4318141a76df481e738d52a615p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_18faca4318141a76df481e738d52a615p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_18faca4318141a76df481e738d52a615p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_18faca4318141a76df481e738d52a615p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_18faca4318141a76df481e738d52a615p5@Tecta
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_18faca4318141a76df481e738d52a615p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_18faca4318141a76df481e738d52a615p2@Tecta
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_18faca4318141a76df481e738d52a615p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_18faca4318141a76df481e738d52a615p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_18faca4318141a76df481e738d52a615p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_18faca4318141a76df481e738d52a615p9@Otof
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_18faca4318141a76df481e738d52a615p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_18faca4318141a76df481e738d52a615p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_18faca4318141a76df481e738d52a615p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_18faca4318141a76df481e738d52a615p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_18faca4318141a76df481e738d52a615p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_18faca4318141a76df481e738d52a615p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_18faca4318141a76df481e738d52a615p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_18faca4318141a76df481e738d52a615p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_18faca4318141a76df481e738d52a615p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_18faca4318141a76df481e738d52a615p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_18faca4318141a76df481e738d52a615p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_18faca4318141a76df481e738d52a615p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_18faca4318141a76df481e738d52a615p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_18faca4318141a76df481e738d52a615p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_18faca4318141a76df481e738d52a615p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_18faca4318141a76df481e738d52a615p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_18faca4318141a76df481e738d52a615p2@Otof

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