UBERON:0006558: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0006558 | |||
|is_a=UBERON:0000477 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=lymphatic part of lymphoid system | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001009;;UBERON:0002465;;UBERON:0007798 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Part of the circulatory system which consists of a series of vessels which collect blood (exclusive of erythrocytes) which seep through capillary walls and return it to the veins.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Part of the circulatory system which consists of a series of vessels which collect blood (exclusive of erythrocytes) which seep through capillary walls and return it to the veins.[AAO]" xsd:string | ||
| | |subset= | ||
| | |synonym="lymphatic system" EXACT [FMA:7162, MA:0002435];;"lymphatic tree system" EXACT [FMA:7162] | ||
|union_of= | |||
|xref=AAO:0010522;;EFO:0000870;;EMAPA:18248;;FMA:7162;;MA:0002961;;MESH:A.15.382.520;;SCTID:362597000 | |||
}} | }} | ||
Latest revision as of 17:57, 12 September 2014
| Name: | lymphatic part of lymphoid system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Synonyms: |
"lymphatic system" EXACT [FMA:7162, MA:0002435] "lymphatic tree system" EXACT [FMA:7162] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster) |
|---|---|
| part_of: | UBERON:0001009(circulatory system),UBERON:0002465(lymphoid system),UBERON:0007798(vascular system) |
Children
| part of: | UBERON:0001473 (lymphatic vessel) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11236-116D3 (Endothelial Cells - Lymphatic, donor1)
- 11317-117D3 (Endothelial Cells - Lymphatic, donor2)
- 11393-118C7 (Endothelial Cells - Lymphatic, donor3)
- 11506-119G3 (Fibroblast - Lymphatic, donor1)
- 11586-120G2 (Fibroblast - Lymphatic, donor2)
- 11638-122C9
- 11667-122G2 (Fibroblast - Lymphatic, donor3)
- 11715-123C5
- 11733-123E5
- 12260-130A1 (Lymphatic Endothelial cells response to VEGFC)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006558 (lymphatic part of lymphoid system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.05e-102 | FFCP PHASE2:Hg19::chr9:13432964..13432971,-#_45fa98923a5b178cae4150f760f59034 | p@chr9:13432964..13432971, - |
| 5.05e-102 | FFCP PHASE1:Hg19::chr9:13432964..13432971,-#_45fa98923a5b178cae4150f760f59034 | p@chr9:13432964..13432971, - |
| 4.74e-79 | FFCP PHASE1:Hg19::chr1:65344872..65344880,-#_ce8ff4a6ac0e20cc9135fa073bdba9f8 | p15@JAK1 |
| 4.74e-79 | FFCP PHASE2:Hg19::chr1:65344872..65344880,-#_ce8ff4a6ac0e20cc9135fa073bdba9f8 | p15@JAK1 |
| 1.08e-76 | FFCP PHASE1:Hg19::chr3:30560368..30560379,+#_4a6e6900a1a858b4135da603c138fae8 | p@chr3:30560368..30560379, + |
| 1.08e-76 | FFCP PHASE2:Hg19::chr3:30560368..30560379,+#_4a6e6900a1a858b4135da603c138fae8 | p@chr3:30560368..30560379, + |
| 6.73e-74 | FFCP PHASE2:Hg19::chr17:28534912..28534942,-#_d0ecbc8e069a2c226e4fef0add5fd0db | p@chr17:28534912..28534942, - |
| 6.73e-74 | FFCP PHASE1:Hg19::chr17:28534912..28534942,-#_d0ecbc8e069a2c226e4fef0add5fd0db | p@chr17:28534912..28534942, - |
| 2.1e-68 | FFCP PHASE1:Hg19::chr2:56149881..56149899,-#_20fba18950713e64268a4574654f802a | p14@EFEMP1 |
| 2.1e-68 | FFCP PHASE2:Hg19::chr2:56149881..56149899,-#_20fba18950713e64268a4574654f802a | p14@EFEMP1 |
| 1.18e-65 | FFCP PHASE1:Hg19::chr19:48613876..48613886,-#_cfd2d45f7f5158b35a1a152fca2594b9 | p7@PLA2G4C |
| 1.18e-65 | FFCP PHASE2:Hg19::chr19:48613876..48613886,-#_cfd2d45f7f5158b35a1a152fca2594b9 | p7@PLA2G4C |
| 3.64e-64 | FFCP PHASE1:Hg19::chr6:74848034..74848043,+#_be964c56bffde13dc90dbaad0e5d1d90 | p@chr6:74848034..74848043, + |
| 3.64e-64 | FFCP PHASE2:Hg19::chr6:74848034..74848043,+#_be964c56bffde13dc90dbaad0e5d1d90 | p@chr6:74848034..74848043, + |
| 6.87e-57 | FFCP PHASE1:Hg19::chr6:5054373..5054392,-#_edbfa038f5362900785c6ed0635e6a75 | p1@AK126470 |
| 6.87e-57 | FFCP PHASE2:Hg19::chr6:5054373..5054392,-#_edbfa038f5362900785c6ed0635e6a75 | p1@AK126470 |
| 9.15e-57 | FFCP PHASE2:Hg19::chr7:79998842..79998855,+#_8509c8c0dcccd79c32552c63755a1f8e | p25@CD36 |
| 9.15e-57 | FFCP PHASE1:Hg19::chr7:79998842..79998855,+#_8509c8c0dcccd79c32552c63755a1f8e | p25@CD36 |
| 1.06e-56 | FFCP PHASE1:Hg19::chr3:145968441..145968451,-#_71fd12a2e5c34bc99282b4359e3c1a8d | p17@PLSCR4 |
| 1.06e-56 | FFCP PHASE2:Hg19::chr3:145968441..145968451,-#_71fd12a2e5c34bc99282b4359e3c1a8d | p17@PLSCR4 |
| 1.22e-56 | FFCP PHASE1:Hg19::chr2:33661536..33661549,+#_12cacb4ae6e628888fd167050b8e75bf | p17@RASGRP3 |
| 1.22e-56 | FFCP PHASE2:Hg19::chr2:33661536..33661549,+#_12cacb4ae6e628888fd167050b8e75bf | p17@RASGRP3 |
| 1.41e-56 | FFCP PHASE2:Hg19::chr9:13446440..13446456,+#_1b9015ca0f3ac8bc2ba595c9af37e04a | p2@ENST00000428006 |
| 1.41e-56 | FFCP PHASE1:Hg19::chr9:13446440..13446456,+#_1b9015ca0f3ac8bc2ba595c9af37e04a | p2@ENST00000428006 |
| 4.57e-56 | FFCP PHASE1:Hg19::chr12:46807404..46807413,+#_5d250e1aafed1efecb4f5f820118f20a | p@chr12:46807404..46807413, + |
| 4.57e-56 | FFCP PHASE2:Hg19::chr17:28534879..28534889,-#_5d250e1aafed1efecb4f5f820118f20a | p@chr17:28534879..28534889, - |
| 4.57e-56 | FFCP PHASE2:Hg19::chr12:46807404..46807413,+#_5d250e1aafed1efecb4f5f820118f20a | p@chr12:46807404..46807413, + |
| 4.57e-56 | FFCP PHASE1:Hg19::chr17:28534879..28534889,-#_5d250e1aafed1efecb4f5f820118f20a | p@chr17:28534879..28534889, - |
| 6.66e-56 | FFCP PHASE1:Hg19::chr7:79998905..79998917,+#_277d81d3cd7e0679ac96d79660c6c9a7 | p26@CD36 |
| 6.66e-56 | FFCP PHASE2:Hg19::chr7:79998905..79998917,+#_277d81d3cd7e0679ac96d79660c6c9a7 | p26@CD36 |
| 2.32e-54 | FFCP PHASE2:Hg19::chr8:30300216..30300245,+#_d0324a4b5f02b670d54b55741a8f1ebf | p10@RBPMS |
| 2.32e-54 | FFCP PHASE1:Hg19::chr8:30300216..30300245,+#_d0324a4b5f02b670d54b55741a8f1ebf | p10@RBPMS |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:108794408..108794422,+#_6042600524dd555373bc12baff5f24bb | p@chr11:108794408..108794422, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:108794429..108794441,+#_6042600524dd555373bc12baff5f24bb | p@chr11:108794429..108794441, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:108794429..108794441,+#_6042600524dd555373bc12baff5f24bb | p@chr11:108794429..108794441, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:75873825..75873826,+#_6042600524dd555373bc12baff5f24bb | p@chr17:75873825..75873826, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:75873825..75873826,+#_6042600524dd555373bc12baff5f24bb | p@chr17:75873825..75873826, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr4:114238344..114238353,+#_6042600524dd555373bc12baff5f24bb | p58@ANK2 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr4:114238344..114238353,+#_6042600524dd555373bc12baff5f24bb | p58@ANK2 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr1:66723029..66723041,+#_6042600524dd555373bc12baff5f24bb | p54@PDE4B |
| 3.99e-50 | FFCP PHASE2:Hg19::chr1:66723029..66723041,+#_6042600524dd555373bc12baff5f24bb | p54@PDE4B |
| 3.99e-50 | FFCP PHASE1:Hg19::chr2:33661526..33661535,+#_6042600524dd555373bc12baff5f24bb | p23@RASGRP3 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr2:33661526..33661535,+#_6042600524dd555373bc12baff5f24bb | p23@RASGRP3 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:108794408..108794422,+#_6042600524dd555373bc12baff5f24bb | p@chr11:108794408..108794422, + |
| 9.58e-48 | FFCP PHASE2:Hg19::chr4:189881560..189881604,-#_b42485ad34e23888598cc78c52738978 | p@chr4:189881560..189881604, - |
| 9.58e-48 | FFCP PHASE1:Hg19::chr4:189881560..189881604,-#_b42485ad34e23888598cc78c52738978 | p@chr4:189881560..189881604, - |
| 1.55e-47 | FFCP PHASE2:Hg19::chr4:90857427..90857438,+#_4cfa9fca89b36449f8fa5529a0296195 | p@chr4:90857427..90857438, + |
| 1.55e-47 | FFCP PHASE1:Hg19::chr4:90857427..90857438,+#_4cfa9fca89b36449f8fa5529a0296195 | p@chr4:90857427..90857438, + |
| 1.71e-47 | FFCP PHASE2:Hg19::chr10:4823152..4823165,-#_5b8e2738e9a35cf12c0c36c546602cf5 | p@chr10:4823152..4823165, - |
| 1.71e-47 | FFCP PHASE1:Hg19::chr10:4823152..4823165,-#_5b8e2738e9a35cf12c0c36c546602cf5 | p@chr10:4823152..4823165, - |
| 3.05e-47 | FFCP PHASE2:Hg19::chr6:49534004..49534016,+#_cc05023be04198997c99753de38cf74e | p@chr6:49534004..49534016, + |
| 3.05e-47 | FFCP PHASE1:Hg19::chr6:49534004..49534016,+#_cc05023be04198997c99753de38cf74e | p@chr6:49534004..49534016, + |
| 7.08e-47 | FFCP PHASE1:Hg19::chr12:96841308..96841312,+#_50c23a794c2b2e104c40d40e1118121b | p@chr12:96841308..96841312, + |
| 7.08e-47 | FFCP PHASE2:Hg19::chr12:96841308..96841312,+#_50c23a794c2b2e104c40d40e1118121b | p@chr12:96841308..96841312, + |
| 3.73e-45 | FFCP PHASE1:Hg19::chr1:43917566..43917577,-#_ab1dcfa23a4da1556ef0937e319b7b9d | p6@HYI |
| 3.73e-45 | FFCP PHASE2:Hg19::chr1:43917566..43917577,-#_ab1dcfa23a4da1556ef0937e319b7b9d | p6@HYI |
| 4.34e-45 | FFCP PHASE1:Hg19::chr3:34262215..34262222,+#_e553453b4f7b70a98e383cca073c85d8 | p@chr3:34262215..34262222, + |
| 4.34e-45 | FFCP PHASE2:Hg19::chr3:34262215..34262222,+#_e553453b4f7b70a98e383cca073c85d8 | p@chr3:34262215..34262222, + |
| 5.04e-45 | FFCP PHASE1:Hg19::chr18:54339814..54339822,+#_86936fed7cadb22e78696f8857635b49 | p7@WDR7 |
| 5.04e-45 | FFCP PHASE2:Hg19::chr18:54339814..54339822,+#_86936fed7cadb22e78696f8857635b49 | p7@WDR7 |
| 6.81e-45 | FFCP PHASE2:Hg19::chr7:10196589..10196595,-#_654f3abc9f8d73da9ec30a8e66c407c1 | p@chr7:10196589..10196595, - |
| 6.81e-45 | FFCP PHASE1:Hg19::chr7:10196589..10196595,-#_654f3abc9f8d73da9ec30a8e66c407c1 | p@chr7:10196589..10196595, - |
| 7.92e-45 | FFCP PHASE1:Hg19::chr2:62705562..62705579,+#_b98328728baba1972d1f016141d81598 | p@chr2:62705562..62705579, + |
| 7.92e-45 | FFCP PHASE2:Hg19::chr2:62705562..62705579,+#_b98328728baba1972d1f016141d81598 | p@chr2:62705562..62705579, + |
| 3.69e-44 | FFCP PHASE1:Hg19::chr4:90856951..90856962,+#_b75a67be1391248f6dac7595427bbffa | p@chr4:90856951..90856962, + |
| 3.69e-44 | FFCP PHASE1:Hg19::chr12:71031281..71031292,-#_b75a67be1391248f6dac7595427bbffa | p12@PTPRB |
| 3.69e-44 | FFCP PHASE2:Hg19::chr12:71031281..71031292,-#_b75a67be1391248f6dac7595427bbffa | p12@PTPRB |
| 3.69e-44 | FFCP PHASE2:Hg19::chr4:90856951..90856962,+#_b75a67be1391248f6dac7595427bbffa | p@chr4:90856951..90856962, + |
| 3.18e-40 | FFCP PHASE1:Hg19::chr12:105882068..105882076,+#_72fb3f9dbe47f510df213ad7dbd967f6 | p@chr12:105882068..105882076, + |
| 3.18e-40 | FFCP PHASE2:Hg19::chr12:105882068..105882076,+#_72fb3f9dbe47f510df213ad7dbd967f6 | p@chr12:105882068..105882076, + |
| 3.89e-40 | FFCP PHASE1:Hg19::chr8:6459787..6459796,+#_4a09e67fb22b9cb1a4410d9aadb16365 | p@chr8:6459787..6459796, + |
| 3.89e-40 | FFCP PHASE2:Hg19::chr8:6459787..6459796,+#_4a09e67fb22b9cb1a4410d9aadb16365 | p@chr8:6459787..6459796, + |
| 1.55e-39 | FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_666f24a397c8bc586ac8a2d66fd738f6 | p@chr4:38057595..38057624, - |
| 1.55e-39 | FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_666f24a397c8bc586ac8a2d66fd738f6 | p@chr4:38057595..38057624, - |
| 6.2e-39 | FFCP PHASE1:Hg19::chr3:194868639..194868654,+#_dc41b81435e4fcd1f7745e4478418413 | p1@ENST00000426468 |
| 6.2e-39 | FFCP PHASE2:Hg19::chr3:194868639..194868654,+#_dc41b81435e4fcd1f7745e4478418413 | p1@ENST00000426468 |
| 9.18e-38 | FFCP PHASE2:Hg19::chr8:16425014..16425019,-#_1568884d8c491a18e307046f6157c3ca | p13@MSR1 |
| 9.18e-38 | FFCP PHASE1:Hg19::chr8:16425014..16425019,-#_1568884d8c491a18e307046f6157c3ca | p13@MSR1 |
| 1.51e-37 | FFCP PHASE2:Hg19::chr6:168195978..168195989,+#_6f12ebf8ef31bad1c4b539a959091ea1 | p3@LOC441179 |
| 1.51e-37 | FFCP PHASE1:Hg19::chr6:168195978..168195989,+#_6f12ebf8ef31bad1c4b539a959091ea1 | p3@LOC441179 |
| 1.95e-37 | FFCP PHASE1:Hg19::chr2:27487913..27487933,-#_cdef6e90988680a54aa60f55af43544e | p@chr2:27487913..27487933, - |
| 1.95e-37 | FFCP PHASE2:Hg19::chr2:27487913..27487933,-#_cdef6e90988680a54aa60f55af43544e | p@chr2:27487913..27487933, - |
| 5.85e-37 | FFCP PHASE2:Hg19::chr8:6420777..6420779,-#_245c3413c2e6ac3c0c2ec5eeb6fc0139 | p5@ANGPT2 |
| 5.85e-37 | FFCP PHASE1:Hg19::chr8:6420777..6420779,-#_245c3413c2e6ac3c0c2ec5eeb6fc0139 | p5@ANGPT2 |
| 1.23e-36 | FFCP PHASE2:Hg19::chr6:168195926..168195943,+#_0cb5d1ae6a9374d65663d546629df65b | p1@LOC441179 |
| 1.23e-36 | FFCP PHASE1:Hg19::chr6:168195926..168195943,+#_0cb5d1ae6a9374d65663d546629df65b | p1@LOC441179 |
| 1.33e-36 | FFCP PHASE2:Hg19::chr10:94590895..94590905,+#_b13f635adf67a2923e1bd31ed746c126 | p8@EXOC6 |
| 1.33e-36 | FFCP PHASE1:Hg19::chr10:94590895..94590905,+#_b13f635adf67a2923e1bd31ed746c126 | p8@EXOC6 |
| 5.59e-36 | FFCP PHASE2:Hg19::chr8:16425043..16425061,-#_51add38687a5fb93e38c2d4bef4cac77 | p5@MSR1 |
| 5.59e-36 | FFCP PHASE1:Hg19::chr8:16425043..16425061,-#_51add38687a5fb93e38c2d4bef4cac77 | p5@MSR1 |
| 1.86e-34 | FFCP PHASE1:Hg19::chr17:79426425..79426444,+#_dd13baa17885e81fa7e82177e28d9345 | p@chr17:79426425..79426444, + |
| 1.86e-34 | FFCP PHASE2:Hg19::chr17:79426425..79426444,+#_dd13baa17885e81fa7e82177e28d9345 | p@chr17:79426425..79426444, + |
| 3.14e-34 | FFCP PHASE2:Hg19::chr11:57543275..57543296,+#_46d4cfa10f7cb54f3714d5208ba2cf7a | p@chr11:57543275..57543296, + |
| 3.14e-34 | FFCP PHASE1:Hg19::chr11:57543275..57543296,+#_46d4cfa10f7cb54f3714d5208ba2cf7a | p@chr11:57543275..57543296, + |
| 2.31e-33 | FFCP PHASE1:Hg19::chr19:45226133..45226157,-#_5cc680d3e67aad181979a158fe7847d9 | p@chr19:45226133..45226157, - |
| 2.31e-33 | FFCP PHASE2:Hg19::chr19:45226133..45226157,-#_5cc680d3e67aad181979a158fe7847d9 | p@chr19:45226133..45226157, - |
| 2.61e-33 | FFCP PHASE2:Hg19::chr3:159570877..159570888,+#_7e5aad795c7f0ab8b54b4cdead79f617 | p43@SCHIP1 |
| 2.61e-33 | FFCP PHASE1:Hg19::chr3:159570877..159570888,+#_7e5aad795c7f0ab8b54b4cdead79f617 | p43@SCHIP1 |
| 7.63e-33 | FFCP PHASE1:Hg19::chr12:71031220..71031229,-#_40455809bc6b44836d759df6b13b9751 | p10@PTPRB |
| 7.63e-33 | FFCP PHASE2:Hg19::chr12:71031220..71031229,-#_40455809bc6b44836d759df6b13b9751 | p10@PTPRB |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Part of the circulatory system which consists of a series of vessels which collect blood (exclusive of erythrocytes) which seep through capillary walls and return it to the veins.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
