UBERON:0005893: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005893
|name=leg bone
|namespace=
|def="A bone that is part of the region of the hindlimb that includes the zeugopod and stylopod. Examples: patella, ...") |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A bone that is part of the region of the hindlimb that includes the zeugopod and stylopod. Examples: patella, femur, tibia. Counter-examples: any foot phalanx" [UBERON:cjm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0005893 | |||
|is_a=UBERON:0003464 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=leg bone | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000978 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=MA:0000670;;MESH:A.02.835.232.500 | |||
}} | }} | ||
Latest revision as of 17:55, 12 September 2014
| Name: | leg bone | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A bone that is part of the region of the hindlimb that includes the zeugopod and stylopod. Examples: patella, femur, tibia. Counter-examples: any foot phalanx" [UBERON:cjm] | ||
| Xrefs: |
|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003464(hindlimb bone) |
|---|---|
| part_of: | UBERON:0000978(leg) |
Children
| is a: | UBERON:0003826 (upper leg bone) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005893 (leg bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_b5278dd1a5982a8d218568a82dc869b1 | p26@Myo18a |
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_b5278dd1a5982a8d218568a82dc869b1 | p26@Myo18a |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_55859134e9fc6af1046b060d7b29da13 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_55859134e9fc6af1046b060d7b29da13 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_55859134e9fc6af1046b060d7b29da13 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_55859134e9fc6af1046b060d7b29da13 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_55859134e9fc6af1046b060d7b29da13 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_55859134e9fc6af1046b060d7b29da13 | p@chr8:75097542..75097549, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_330ba55d4468568142b33c645c93c782 | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_330ba55d4468568142b33c645c93c782 | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_4d99345afedd3bedcda0d009899cd1e0 | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_4d99345afedd3bedcda0d009899cd1e0 | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_a3e10c7ff3a168060e705bca4f31f7aa | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_a3e10c7ff3a168060e705bca4f31f7aa | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_a3e10c7ff3a168060e705bca4f31f7aa | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_a3e10c7ff3a168060e705bca4f31f7aa | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_a3e10c7ff3a168060e705bca4f31f7aa | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_a3e10c7ff3a168060e705bca4f31f7aa | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_a3e10c7ff3a168060e705bca4f31f7aa | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_a3e10c7ff3a168060e705bca4f31f7aa | p@chr1:174140324..174140335, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_d85c6218ac9a04ecbc824e58f73b79a8 | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_d85c6218ac9a04ecbc824e58f73b79a8 | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_7698c529ee19cbc7dbd8a7170168e8ae | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_7698c529ee19cbc7dbd8a7170168e8ae | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_4621f2a74c473a784abf761eda91604d | p3@Asb16 |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_4621f2a74c473a784abf761eda91604d | p3@Asb16 |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_ea94bbeaa207dd858b5b7b8f18660cf3 | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_ea94bbeaa207dd858b5b7b8f18660cf3 | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_804f05fb6e2a203aba8219f5044bc28a | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_804f05fb6e2a203aba8219f5044bc28a | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_2e495b8556f46d9639e4019bf4d32237 | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_2e495b8556f46d9639e4019bf4d32237 | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_2035856236373c37494fe92d059877e2 | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_2035856236373c37494fe92d059877e2 | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_504950468dda9d78746adecebf68909a | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_504950468dda9d78746adecebf68909a | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_504950468dda9d78746adecebf68909a | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_504950468dda9d78746adecebf68909a | p@chr1:166815111..166815121, - |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_da64c18fe38e372bd47929eb73e98db4 | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_da64c18fe38e372bd47929eb73e98db4 | p4@Lipc |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_da64c18fe38e372bd47929eb73e98db4 | p4@Lipc |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_da64c18fe38e372bd47929eb73e98db4 | p@chr11:75409652..75409664, + |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_3b8fc77a9de19fc1f553d68cd2b0e75e | p6@Sp7 |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_3b8fc77a9de19fc1f553d68cd2b0e75e | p6@Sp7 |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_04400146a475c2fb5b449a19ab8ffb2a | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_04400146a475c2fb5b449a19ab8ffb2a | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_04400146a475c2fb5b449a19ab8ffb2a | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_04400146a475c2fb5b449a19ab8ffb2a | p@chr18:76271498..76271508, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_0a265d39b43c91cc3001fac5d8eb5293 | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_0a265d39b43c91cc3001fac5d8eb5293 | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_4cee575818a579c41b755857d9513196 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_4cee575818a579c41b755857d9513196 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_4cee575818a579c41b755857d9513196 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_4cee575818a579c41b755857d9513196 | p@chr15:58649683..58649688, - |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_d61d7b2b227cde3759df0e6f2ac5ad21 | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_d61d7b2b227cde3759df0e6f2ac5ad21 | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_58cc4f1d507f08258826c97f2c4c1c21 | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_58cc4f1d507f08258826c97f2c4c1c21 | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_12c51d0818ac0bff892a4d8e9d6a6ec5 | p2@Myh4 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_12c51d0818ac0bff892a4d8e9d6a6ec5 | p2@Myh4 |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_406e927588483b76d25552c0e679d5f4 | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_406e927588483b76d25552c0e679d5f4 | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_09e99e3f431afc3c4f912ee2b3285fd4 | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_09e99e3f431afc3c4f912ee2b3285fd4 | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_09e99e3f431afc3c4f912ee2b3285fd4 | p1@Msmp |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_09e99e3f431afc3c4f912ee2b3285fd4 | p@chr11:67056544..67056589, - |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_d167062aa030f329cfe42ca6693e80ed | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_d167062aa030f329cfe42ca6693e80ed | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_d167062aa030f329cfe42ca6693e80ed | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_d167062aa030f329cfe42ca6693e80ed | p@chrY:2858251..2858257, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_81800475498cebe18fa14277c04801cf | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_81800475498cebe18fa14277c04801cf | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_46b49d499201ad306858e650fe02c639 | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_46b49d499201ad306858e650fe02c639 | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_95732ad3005cc8e9a00767bd69f20a61 | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_95732ad3005cc8e9a00767bd69f20a61 | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_b051916cc392b69cb3b068c3089e954d | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_b051916cc392b69cb3b068c3089e954d | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_e90b3fbb08e90e41d796e8617e0828ca | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_e90b3fbb08e90e41d796e8617e0828ca | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_7b5104086c9d77c956f4a0b86735b590 | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_7b5104086c9d77c956f4a0b86735b590 | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_3d4b6a2c3d1d2416285ec076c791dfd6 | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_3d4b6a2c3d1d2416285ec076c791dfd6 | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_3d4b6a2c3d1d2416285ec076c791dfd6 | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_3d4b6a2c3d1d2416285ec076c791dfd6 | p@chr7:133592162..133592188, - |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_a053be5684bde67da6ea1212d94b923a | p4@Sgca |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_a053be5684bde67da6ea1212d94b923a | p4@Sgca |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_8dc3386f11f834c33dd0da533ffa86f6 | p1@Mepe |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_8dc3386f11f834c33dd0da533ffa86f6 | p1@Mepe |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_d792360bdb255ed9d821553969fd6eb5 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_d792360bdb255ed9d821553969fd6eb5 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_d792360bdb255ed9d821553969fd6eb5 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_d792360bdb255ed9d821553969fd6eb5 | p2@Tm4sf19 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_00ffd75f325acd6ccbdc0e6a5d659568 | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_00ffd75f325acd6ccbdc0e6a5d659568 | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_00ffd75f325acd6ccbdc0e6a5d659568 | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_00ffd75f325acd6ccbdc0e6a5d659568 | p5@Col11a2 |
| 1.36e-25 | FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_1ede5630d220e347549f42ea10f08859 | p@chr2:180890942..180890956, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_1ede5630d220e347549f42ea10f08859 | p@chr2:180890942..180890956, - |
