UBERON:0005424: Difference between revisions
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|has_quality= | |has_quality= | ||
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|part_of= | |part_of=UBERON:0003072 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
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Latest revision as of 13:40, 27 June 2012
| Name: | presumptive retinal pigmented epithelium | ||
|---|---|---|---|
| Definition: | "Portion of tissue that is the outer layer of the optic cup and will become the retinal pigmented epithelium." [ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: |
"optic cup outer layer" EXACT [EHDAA2:0001306] "outer layer optic cup" EXACT [ZFA:0000064] "presumptive pigmented epithelia" EXACT PLURAL [ZFA:0000064] | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0006598(presumptive structure),UBERON:0010312(immature eye) |
|---|---|
| part_of: | UBERON:0003072(optic cup) |
Children
| develops from: | UBERON:0001782 (pigmented layer of retina) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005424 (presumptive retinal pigmented epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.79e-195 | FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_c5e0e058c7df9c285d4dbca76b9d100f | p@chr1:147150847..147150854, - |
| 2.79e-195 | FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_c5e0e058c7df9c285d4dbca76b9d100f | p@chr1:147150847..147150854, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_394af110e10dd7c64fb14d6e4105d2ef | p2@SERPINE3 |
| 3.27e-147 | FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_394af110e10dd7c64fb14d6e4105d2ef | p2@SERPINE3 |
| 5.41e-147 | FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_6f45c29b80e032dccb48530b60d64054 | p@chr13:99135322..99135327, - |
| 5.41e-147 | FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_6f45c29b80e032dccb48530b60d64054 | p@chr13:99135322..99135327, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr13:51913893..51913901,+#_6b16c79a6541defd0f41ae008aeba1de | p@chr13:51913893..51913901, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr13:51913893..51913901,+#_6b16c79a6541defd0f41ae008aeba1de | p@chr13:51913893..51913901, + |
| 3.48e-118 | FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_b0e2d943855f7b4c5650fe539e6b0575 | p@chr11:109990513..109990520, - |
| 3.48e-118 | FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_b0e2d943855f7b4c5650fe539e6b0575 | p@chr11:109990513..109990520, - |
| 1.16e-117 | FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_e0eeb11eb00586cf8912166016ef8f95 | p@chr5:70308745..70308754, - |
| 1.16e-117 | FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_e0eeb11eb00586cf8912166016ef8f95 | p@chr5:70308745..70308754, - |
| 7.95e-99 | FFCP PHASE2:Hg19::chr11:61522844..61522875,+#_fdeed0e1e1b2cd4e3ac69e12bdbc6fb6 | p2@C11orf9 |
| 7.95e-99 | FFCP PHASE1:Hg19::chr11:61522844..61522875,+#_fdeed0e1e1b2cd4e3ac69e12bdbc6fb6 | p2@C11orf9 |
| 2.17e-98 | FFCP PHASE2:Hg19::chr2:235591306..235591328,+#_0f534057025fc0fc12cbe53acbcc7fcc | p@chr2:235591306..235591328, + |
| 2.17e-98 | FFCP PHASE1:Hg19::chr2:235591306..235591328,+#_0f534057025fc0fc12cbe53acbcc7fcc | p@chr2:235591306..235591328, + |
| 6.24e-88 | FFCP PHASE2:Hg19::chr11:61522820..61522823,+#_2cae0c1b64d93308a421745152e0f280 | p9@C11orf9 |
| 6.24e-88 | FFCP PHASE1:Hg19::chr11:61522820..61522823,+#_2cae0c1b64d93308a421745152e0f280 | p9@C11orf9 |
| 9.74e-88 | FFCP PHASE2:Hg19::chr8:75898210..75898219,+#_74cfd4904953cc0d4e91a04c55f22303 | p11@CRISPLD1 |
| 9.74e-88 | FFCP PHASE1:Hg19::chr8:75898210..75898219,+#_74cfd4904953cc0d4e91a04c55f22303 | p11@CRISPLD1 |
| 1.52e-87 | FFCP PHASE2:Hg19::chr2:45166274..45166281,-#_ec140ca29e5218167ecb67587155d7b3 | p5@ENST00000437916 |
| 1.52e-87 | FFCP PHASE1:Hg19::chr2:45166274..45166281,-#_ec140ca29e5218167ecb67587155d7b3 | p5@ENST00000437916 |
| 2.28e-85 | FFCP PHASE1:Hg19::chr13:51913819..51913838,+#_d13e8192292d46959024b488ba95e0c5 | p1@SERPINE3 |
| 2.28e-85 | FFCP PHASE2:Hg19::chr13:51913819..51913838,+#_d13e8192292d46959024b488ba95e0c5 | p1@SERPINE3 |
| 1.01e-74 | FFCP PHASE2:Hg19::chr3:69928426..69928436,+#_76bb02458a8a5e891d50f9fa0e8b7b53 | p@chr3:69928426..69928436, + |
| 1.01e-74 | FFCP PHASE1:Hg19::chr3:69928426..69928436,+#_76bb02458a8a5e891d50f9fa0e8b7b53 | p@chr3:69928426..69928436, + |
| 1.29e-74 | FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_bc2163a8a4d8d4ef27f90629d3c6aee1 | p@chr3:69928404..69928418, + |
| 1.29e-74 | FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_bc2163a8a4d8d4ef27f90629d3c6aee1 | p@chr3:69928404..69928418, + |
| 2.14e-74 | FFCP PHASE2:Hg19::chr6:168250971..168250985,+#_1ae998c26a843c8244cbdef9b7c4b08c | p@chr6:168250971..168250985, + |
| 2.14e-74 | FFCP PHASE1:Hg19::chr22:37633537..37633546,-#_1ae998c26a843c8244cbdef9b7c4b08c | p@chr22:37633537..37633546, - |
| 2.14e-74 | FFCP PHASE2:Hg19::chr22:37633537..37633546,-#_1ae998c26a843c8244cbdef9b7c4b08c | p@chr22:37633537..37633546, - |
| 2.14e-74 | FFCP PHASE1:Hg19::chr6:168250971..168250985,+#_1ae998c26a843c8244cbdef9b7c4b08c | p@chr6:168250971..168250985, + |
| 3.54e-74 | FFCP PHASE1:Hg19::chr1:43533230..43533270,+#_8f1bd94f138f49f7b916f8057ffa0819 | p@chr1:43533230..43533270, + |
| 3.54e-74 | FFCP PHASE2:Hg19::chr1:43533230..43533270,+#_8f1bd94f138f49f7b916f8057ffa0819 | p@chr1:43533230..43533270, + |
| 1.54e-66 | FFCP PHASE1:Hg19::chr21:36041275..36041282,+#_98215c70f62e8dbe5003681510498f79 | p5@CLIC6 |
| 1.54e-66 | FFCP PHASE2:Hg19::chr21:36041275..36041282,+#_98215c70f62e8dbe5003681510498f79 | p5@CLIC6 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr13:51913997..51914020,+#_eeb7752c39158ae9c9ef257bbc389726 | p@chr13:51913997..51914020, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr13:51913997..51914020,+#_eeb7752c39158ae9c9ef257bbc389726 | p@chr13:51913997..51914020, + |
| 6.53e-66 | FFCP PHASE1:Hg19::chr6:168251000..168251007,+#_bbaa571ee15c44ff485c01c639dd335f | p@chr6:168251000..168251007, + |
| 6.53e-66 | FFCP PHASE2:Hg19::chr6:168251000..168251007,+#_bbaa571ee15c44ff485c01c639dd335f | p@chr6:168251000..168251007, + |
| 2.98e-60 | FFCP PHASE1:Hg19::chr13:99135278..99135298,-#_71ca088ab62a583893cbd589605b5372 | p@chr13:99135278..99135298, - |
| 2.98e-60 | FFCP PHASE2:Hg19::chr13:99135278..99135298,-#_71ca088ab62a583893cbd589605b5372 | p@chr13:99135278..99135298, - |
| 5.01e-55 | FFCP PHASE2:Hg19::chr3:69928371..69928385,+#_9963275bbf324919198c7e47423f1a54 | p@chr3:69928371..69928385, + |
| 5.01e-55 | FFCP PHASE1:Hg19::chr3:69928371..69928385,+#_9963275bbf324919198c7e47423f1a54 | p@chr3:69928371..69928385, + |
| 7.24e-55 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_d76fb30429ea892c84682fc09bff7934 | p@chr14:87636652..87636657, - |
| 7.24e-55 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_d76fb30429ea892c84682fc09bff7934 | p@chr14:87636652..87636657, - |
| 1.68e-53 | FFCP PHASE2:Hg19::chr2:235591286..235591298,+#_18b3fc5f85732e8815015b6680c66686 | p@chr2:235591286..235591298, + |
| 1.68e-53 | FFCP PHASE1:Hg19::chr2:235591286..235591298,+#_18b3fc5f85732e8815015b6680c66686 | p@chr2:235591286..235591298, + |
| 6.39e-53 | FFCP PHASE2:Hg19::chr11:119217442..119217445,-#_db32d38115a3fb8975e630a31ada6dcb | p5@MFRP, p6@C1QTNF5 |
| 6.39e-53 | FFCP PHASE1:Hg19::chr11:119217442..119217445,-#_db32d38115a3fb8975e630a31ada6dcb | p5@MFRP, p6@C1QTNF5 |
| 6.39e-53 | FFCP PHASE1:Hg19::chr16:84228961..84228982,+#_db32d38115a3fb8975e630a31ada6dcb | p@chr16:84228961..84228982, + |
| 6.39e-53 | FFCP PHASE2:Hg19::chr16:84228961..84228982,+#_db32d38115a3fb8975e630a31ada6dcb | p@chr16:84228961..84228982, + |
| 9.6e-51 | FFCP PHASE2:Hg19::chr21:36041264..36041274,+#_c381c1805a2428da0cba0258a15b72b7 | p3@CLIC6 |
| 9.6e-51 | FFCP PHASE1:Hg19::chr21:36041264..36041274,+#_c381c1805a2428da0cba0258a15b72b7 | p3@CLIC6 |
| 1.89e-50 | FFCP PHASE1:Hg19::chr11:75201755..75201762,-#_1e35161d85a1bd271cca6e6d41024fd9 | p7@GDPD5 |
| 1.89e-50 | FFCP PHASE2:Hg19::chr11:75201755..75201762,-#_1e35161d85a1bd271cca6e6d41024fd9 | p7@GDPD5 |
| 7.24e-50 | FFCP PHASE1:Hg19::chr11:119217421..119217435,-#_32184d1e84f5f82dcb862615e868c418 | p4@MFRP, p5@C1QTNF5 |
| 7.24e-50 | FFCP PHASE2:Hg19::chr11:119217421..119217435,-#_32184d1e84f5f82dcb862615e868c418 | p4@MFRP, p5@C1QTNF5 |
| 6.25e-45 | FFCP PHASE1:Hg19::chr17:932596..932605,-#_e5b921c2c0ff43c5600842d5ef4bed7d | p@chr17:932596..932605, - |
| 6.25e-45 | FFCP PHASE2:Hg19::chr17:932596..932605,-#_e5b921c2c0ff43c5600842d5ef4bed7d | p@chr17:932596..932605, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr22:38480132..38480159,-#_a4807607632376655baf154dda95a906 | p1@SLC16A8 |
| 1.22e-44 | FFCP PHASE2:Hg19::chr17:932340..932343,-#_a4807607632376655baf154dda95a906 | p@chr17:932340..932343, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr20:52790691..52790695,-#_a4807607632376655baf154dda95a906 | p5@CYP24A1 |
| 1.22e-44 | FFCP PHASE2:Hg19::chr20:52790691..52790695,-#_a4807607632376655baf154dda95a906 | p5@CYP24A1 |
| 1.22e-44 | FFCP PHASE1:Hg19::chr22:38480132..38480159,-#_a4807607632376655baf154dda95a906 | p1@SLC16A8 |
| 1.22e-44 | FFCP PHASE1:Hg19::chr17:932340..932343,-#_a4807607632376655baf154dda95a906 | p@chr17:932340..932343, - |
| 2.38e-44 | FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_19b781a5729e6536e4334c3309517bee | p@chr3:98672197..98672201, + |
| 2.38e-44 | FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_19b781a5729e6536e4334c3309517bee | p@chr3:98672197..98672201, + |
| 2.97e-44 | FFCP PHASE2:Hg19::chr3:183733654..183733680,-#_52bee44938e75f942e8f27993b1c755c | p@chr3:183733654..183733680, - |
| 2.97e-44 | FFCP PHASE2:Hg19::chr9:127025189..127025200,+#_52bee44938e75f942e8f27993b1c755c | p1@ENST00000437461 |
| 2.97e-44 | FFCP PHASE1:Hg19::chr3:183733654..183733680,-#_52bee44938e75f942e8f27993b1c755c | p@chr3:183733654..183733680, - |
| 2.97e-44 | FFCP PHASE1:Hg19::chr9:127025189..127025200,+#_52bee44938e75f942e8f27993b1c755c | p1@ENST00000437461 |
| 4.49e-44 | FFCP PHASE2:Hg19::chr9:140088882..140088898,-#_30efa866a35b22a19def807808b948a7 | p@chr9:140088882..140088898, - |
| 4.49e-44 | FFCP PHASE1:Hg19::chr9:140088882..140088898,-#_30efa866a35b22a19def807808b948a7 | p@chr9:140088882..140088898, - |
| 1.24e-43 | FFCP PHASE1:Hg19::chr14:28081776..28081788,+#_56779ffab5267402f57a8a95b54aeb7e | p1@LOC100505967 |
| 1.24e-43 | FFCP PHASE2:Hg19::chr14:28081776..28081788,+#_56779ffab5267402f57a8a95b54aeb7e | p1@LOC100505967 |
| 2.95e-43 | FFCP PHASE2:Hg19::chr2:45169172..45169177,+#_4fd2826b62d82e789dc6611bbe2b7b75 | p11@SIX3 |
| 2.95e-43 | FFCP PHASE1:Hg19::chr2:45169172..45169177,+#_4fd2826b62d82e789dc6611bbe2b7b75 | p11@SIX3 |
| 4.55e-43 | FFCP PHASE2:Hg19::chr5:33984786..33984820,-#_2afa61e63e4e140e44259877ddbe295e | p2@SLC45A2 |
| 4.55e-43 | FFCP PHASE1:Hg19::chr5:33984786..33984820,-#_2afa61e63e4e140e44259877ddbe295e | p2@SLC45A2 |
| 3.86e-41 | FFCP PHASE1:Hg19::chr16:68301840..68301845,+#_933528064c2e04575897a05c0b6b6219 | p@chr16:68301840..68301845, + |
| 3.86e-41 | FFCP PHASE2:Hg19::chr16:68301840..68301845,+#_933528064c2e04575897a05c0b6b6219 | p@chr16:68301840..68301845, + |
| 9.96e-41 | FFCP PHASE1:Hg19::chr19:49140255..49140268,-#_5cdc1f326b0ed7dc99a4360f5777da7a | p9@DBP |
| 9.96e-41 | FFCP PHASE2:Hg19::chr19:49140255..49140268,-#_5cdc1f326b0ed7dc99a4360f5777da7a | p9@DBP |
| 1.31e-40 | FFCP PHASE1:Hg19::chr12:52579447..52579461,-#_5579853df116006508859188a06ae4f1 | p6@KRT80 |
| 1.31e-40 | FFCP PHASE2:Hg19::chr12:52579447..52579461,-#_5579853df116006508859188a06ae4f1 | p6@KRT80 |
| 1.49e-40 | FFCP PHASE2:Hg19::chr4:23886471..23886501,-#_58aaa7c9663e8e020fbd839c387852c0 | p5@PPARGC1A |
| 1.49e-40 | FFCP PHASE1:Hg19::chr4:23886471..23886501,-#_58aaa7c9663e8e020fbd839c387852c0 | p5@PPARGC1A |
| 1.71e-40 | FFCP PHASE2:Hg19::chr11:119217318..119217346,-#_d34d79f1bd0c6c5f5b3ab6991e020624 | p2@MFRP |
| 1.71e-40 | FFCP PHASE1:Hg19::chr11:119217318..119217346,-#_d34d79f1bd0c6c5f5b3ab6991e020624 | p2@MFRP |
| 1.96e-40 | FFCP PHASE2:Hg19::chr11:119217405..119217420,-#_7f81ff304f0d9f098d3403d885309b1e | p3@C1QTNF5, p3@MFRP |
| 1.96e-40 | FFCP PHASE1:Hg19::chr11:119217405..119217420,-#_7f81ff304f0d9f098d3403d885309b1e | p3@C1QTNF5, p3@MFRP |
| 2.93e-40 | FFCP PHASE2:Hg19::chr8:144905532..144905541,-#_cf29d5a33b10c31478571ddee9cd373d | p6@PUF60 |
| 2.93e-40 | FFCP PHASE1:Hg19::chr8:144905532..144905541,-#_cf29d5a33b10c31478571ddee9cd373d | p6@PUF60 |
| 3.83e-40 | FFCP PHASE2:Hg19::chr2:45162900..45162914,-#_4fd476f320e1ac413db7f3ecd9e43b46 | p1@ENST00000432125 |
| 3.83e-40 | FFCP PHASE1:Hg19::chr2:45162900..45162914,-#_4fd476f320e1ac413db7f3ecd9e43b46 | p1@ENST00000432125 |
| 6.54e-40 | FFCP PHASE2:Hg19::chr9:73483992..73484003,-#_30cd7a57624e6b861aa0d2dd734010d3 | p6@TRPM3 |
| 6.54e-40 | FFCP PHASE1:Hg19::chr9:73483992..73484003,-#_30cd7a57624e6b861aa0d2dd734010d3 | p6@TRPM3 |
| 1.11e-38 | FFCP PHASE1:Hg19::chr11:67776077..67776088,+#_7e6fe289441478057322ebc29f97da06 | p5@ALDH3B1 |
| 1.11e-38 | FFCP PHASE2:Hg19::chr11:67776077..67776088,+#_7e6fe289441478057322ebc29f97da06 | p5@ALDH3B1 |
