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{{UBERON
{{UBERON
|id=UBERON:0004645
|alt_id=
|name=urinary bladder urothelium
|anatomical_img_id=FMA:15936
|namespace=
|def=
|xref=BTO:0001694;;FMA:15936;;MA:0001693;;ncithesaurus:Transitional_Epithelium;;SCTID:25631003
|is_a=UBERON:0000077;;UBERON:0000365;;UBERON:0003350
|synonym="bladder transitional cell epithelium" EXACT [FMA:15936];;"transitional epithelium" RELATED [MA:0001693];;"transitional epithelium of urinary bladder" EXACT [FMA:15936];;"urinary bladder transitional epithelium" EXACT [FMA:15936];;"urothelium" BROAD [BTO:0001245];;"urothelium of urinary bladder" EXACT [FMA:15936]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004645
|is_a=UBERON:0000077 ;;UBERON:0000365 ;;UBERON:0003350 ;;UBERON:0012275
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=urinary bladder urothelium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001255;;UBERON:0001259
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="bladder transitional cell epithelium" EXACT [FMA:15936];;"transitional epithelium" RELATED [MA:0001693];;"transitional epithelium of urinary bladder" EXACT [FMA:15936];;"urinary bladder transitional epithelium" EXACT [FMA:15936];;"urothelium" BROAD [BTO:0001245];;"urothelium of urinary bladder" EXACT [FMA:15936]
|union_of=
|xref=BTO:0001694;;FMA:15936;;MA:0001693;;ncithesaurus:Transitional_Epithelium;;SCTID:25631003
}}
}}

Latest revision as of 17:46, 12 September 2014

Name:urinary bladder urothelium
Namespace:FANTOM
Xrefs:
links:

BTO:0001694
FMA:15936
MA:0001693
ncithesaurus:Transitional_Epithelium

SCTID:25631003
Synonyms: "bladder transitional cell epithelium" EXACT [FMA:15936]
"transitional epithelium" RELATED [MA:0001693]
"transitional epithelium of urinary bladder" EXACT [FMA:15936]
"urinary bladder transitional epithelium" EXACT [FMA:15936]
"urothelium" BROAD [BTO:0001245]
"urothelium of urinary bladder" EXACT [FMA:15936]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0000365(urothelium),UBERON:0003350(epithelium of mucosa),UBERON:0012275(meso-epithelium)
part_of:UBERON:0001255(urinary bladder),UBERON:0001259(mucosa of urinary bladder)



Children

derives from:FF:0100792 (urinary bladder cancer cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004645 (urinary bladder urothelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr10:5660248..5660254,-#_cc9520f1613fb31927ab60c6dd6ba874p2@ENST00000427341
5.42e-195FFCP PHASE2:Hg19::chr15:101282110..101282113,+#_cc9520f1613fb31927ab60c6dd6ba874p@chr15:101282110..101282113, +
5.42e-195FFCP PHASE2:Hg19::chr10:5660248..5660254,-#_cc9520f1613fb31927ab60c6dd6ba874p2@ENST00000427341
5.42e-195FFCP PHASE1:Hg19::chr15:101282110..101282113,+#_cc9520f1613fb31927ab60c6dd6ba874p@chr15:101282110..101282113, +
9.37e-99FFCP PHASE2:Hg19::chr6:21664489..21664494,+#_ed7335f58aa894a79ca156134da8d133p@chr6:21664489..21664494, +
9.37e-99FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_ed7335f58aa894a79ca156134da8d133p26@LINC00340
9.37e-99FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_ed7335f58aa894a79ca156134da8d133p26@LINC00340
9.37e-99FFCP PHASE1:Hg19::chr6:21383702..21383704,+#_ed7335f58aa894a79ca156134da8d133p@chr6:21383702..21383704, +
9.37e-99FFCP PHASE1:Hg19::chr21:39627877..39627884,+#_ed7335f58aa894a79ca156134da8d133p@chr21:39627877..39627884, +
9.37e-99FFCP PHASE2:Hg19::chr6:21383702..21383704,+#_ed7335f58aa894a79ca156134da8d133p@chr6:21383702..21383704, +
9.37e-99FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_ed7335f58aa894a79ca156134da8d133p@chr3:13992334..13992338, -
9.37e-99FFCP PHASE2:Hg19::chr21:39627877..39627884,+#_ed7335f58aa894a79ca156134da8d133p@chr21:39627877..39627884, +
9.37e-99FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_ed7335f58aa894a79ca156134da8d133p@chr3:13992334..13992338, -
9.37e-99FFCP PHASE1:Hg19::chr6:21588091..21588098,-#_ed7335f58aa894a79ca156134da8d133p@chr6:21588091..21588098, -
9.37e-99FFCP PHASE2:Hg19::chr6:21588091..21588098,-#_ed7335f58aa894a79ca156134da8d133p@chr6:21588091..21588098, -
9.37e-99FFCP PHASE1:Hg19::chr6:21664489..21664494,+#_ed7335f58aa894a79ca156134da8d133p@chr6:21664489..21664494, +
2.55e-98FFCP PHASE2:Hg19::chr1:233430709..233430711,+#_6eabf29724e30aefa53bc3d97b1e3934p@chr1:233430709..233430711, +
2.55e-98FFCP PHASE1:Hg19::chr1:233430709..233430711,+#_6eabf29724e30aefa53bc3d97b1e3934p@chr1:233430709..233430711, +
2.55e-98FFCP PHASE1:Hg19::chr6:21876977..21876981,+#_6eabf29724e30aefa53bc3d97b1e3934p@chr6:21876977..21876981, +
2.55e-98FFCP PHASE2:Hg19::chr6:21876977..21876981,+#_6eabf29724e30aefa53bc3d97b1e3934p@chr6:21876977..21876981, +
1.23e-66FFCP PHASE2:Hg19::chr13:96459990..96459992,+#_a65c16c814d9e5421dd2fd68a61e8e59p@chr13:96459990..96459992, +
1.23e-66FFCP PHASE1:Hg19::chr6:21664412..21664419,+#_a65c16c814d9e5421dd2fd68a61e8e59p@chr6:21664412..21664419, +
1.23e-66FFCP PHASE2:Hg19::chr6:21664412..21664419,+#_a65c16c814d9e5421dd2fd68a61e8e59p@chr6:21664412..21664419, +
1.23e-66FFCP PHASE1:Hg19::chr13:96459990..96459992,+#_a65c16c814d9e5421dd2fd68a61e8e59p@chr13:96459990..96459992, +
2.39e-66FFCP PHASE2:Hg19::chr11:69867053..69867065,-#_a23b7aaad2e100eeff9cd1b32260363ep2@ENST00000528507
2.39e-66FFCP PHASE2:Hg19::chr15:79296342..79296353,-#_a23b7aaad2e100eeff9cd1b32260363ep@chr15:79296342..79296353, -
2.39e-66FFCP PHASE1:Hg19::chr6:20534754..20534756,-#_a23b7aaad2e100eeff9cd1b32260363ep@chr6:20534754..20534756, -
2.39e-66FFCP PHASE1:Hg19::chr2:176971270..176971277,-#_a23b7aaad2e100eeff9cd1b32260363ep@chr2:176971270..176971277, -
2.39e-66FFCP PHASE2:Hg19::chr2:176971270..176971277,-#_a23b7aaad2e100eeff9cd1b32260363ep@chr2:176971270..176971277, -
2.39e-66FFCP PHASE2:Hg19::chr6:20534754..20534756,-#_a23b7aaad2e100eeff9cd1b32260363ep@chr6:20534754..20534756, -
2.39e-66FFCP PHASE1:Hg19::chr11:69867053..69867065,-#_a23b7aaad2e100eeff9cd1b32260363ep2@ENST00000528507
2.39e-66FFCP PHASE1:Hg19::chr15:79296342..79296353,-#_a23b7aaad2e100eeff9cd1b32260363ep@chr15:79296342..79296353, -
4.66e-66FFCP PHASE1:Hg19::chr11:92613787..92613796,+#_0188ba23718b5e09fc0d07bc1b3c42e7p@chr11:92613787..92613796, +
4.66e-66FFCP PHASE2:Hg19::chr15:40544787..40544798,+#_0188ba23718b5e09fc0d07bc1b3c42e7p23@PAK6
4.66e-66FFCP PHASE1:Hg19::chr14:80855894..80855900,+#_0188ba23718b5e09fc0d07bc1b3c42e7p@chr14:80855894..80855900, +
4.66e-66FFCP PHASE2:Hg19::chr11:92613787..92613796,+#_0188ba23718b5e09fc0d07bc1b3c42e7p@chr11:92613787..92613796, +
4.66e-66FFCP PHASE1:Hg19::chr15:40544787..40544798,+#_0188ba23718b5e09fc0d07bc1b3c42e7p23@PAK6
4.66e-66FFCP PHASE2:Hg19::chr14:80855894..80855900,+#_0188ba23718b5e09fc0d07bc1b3c42e7p@chr14:80855894..80855900, +
1.46e-50FFCP PHASE1:Hg19::chr6:21022855..21022892,+#_5a6355c216b7f48cc79a7b3f89ccfc64p@chr6:21022855..21022892, +
1.46e-50FFCP PHASE2:Hg19::chr6:21022855..21022892,+#_5a6355c216b7f48cc79a7b3f89ccfc64p@chr6:21022855..21022892, +
1.46e-50FFCP PHASE1:Hg19::chr6:21665113..21665128,-#_5a6355c216b7f48cc79a7b3f89ccfc64p@chr6:21665113..21665128, -
1.46e-50FFCP PHASE2:Hg19::chr6:21665113..21665128,-#_5a6355c216b7f48cc79a7b3f89ccfc64p@chr6:21665113..21665128, -
1.46e-50FFCP PHASE1:Hg19::chr6:21665769..21665780,+#_5a6355c216b7f48cc79a7b3f89ccfc64p@chr6:21665769..21665780, +
1.46e-50FFCP PHASE2:Hg19::chr6:21665769..21665780,+#_5a6355c216b7f48cc79a7b3f89ccfc64p@chr6:21665769..21665780, +
3.99e-50FFCP PHASE1:Hg19::chr17:4699695..4699699,-#_622fdeb0d6072c93c89e99ac5a0bdb66p@chr17:4699695..4699699, -
3.99e-50FFCP PHASE2:Hg19::chr17:4699695..4699699,-#_622fdeb0d6072c93c89e99ac5a0bdb66p@chr17:4699695..4699699, -
9.91e-41FFCP PHASE2:Hg19::chr6:22221030..22221034,+#_27223be3577906981a022a6370aa0461p1@AL117559
9.91e-41FFCP PHASE1:Hg19::chr10:30046722..30046725,-#_27223be3577906981a022a6370aa0461p@chr10:30046722..30046725, -
9.91e-41FFCP PHASE2:Hg19::chr10:30046722..30046725,-#_27223be3577906981a022a6370aa0461p@chr10:30046722..30046725, -
9.91e-41FFCP PHASE1:Hg19::chr5:57555322..57555334,-#_27223be3577906981a022a6370aa0461p@chr5:57555322..57555334, -
9.91e-41FFCP PHASE2:Hg19::chr5:57555322..57555334,-#_27223be3577906981a022a6370aa0461p@chr5:57555322..57555334, -
9.91e-41FFCP PHASE1:Hg19::chr6:22221030..22221034,+#_27223be3577906981a022a6370aa0461p1@AL117559
1.48e-40FFCP PHASE2:Hg19::chr17:2264983..2264992,+#_4ba98de282bb3209c12193f71c27b4b3p@chr17:2264983..2264992, +
1.48e-40FFCP PHASE1:Hg19::chr10:30151938..30151956,-#_4ba98de282bb3209c12193f71c27b4b3p@chr10:30151938..30151956, -
1.48e-40FFCP PHASE1:Hg19::chr17:2264983..2264992,+#_4ba98de282bb3209c12193f71c27b4b3p@chr17:2264983..2264992, +
1.48e-40FFCP PHASE2:Hg19::chr10:30151938..30151956,-#_4ba98de282bb3209c12193f71c27b4b3p@chr10:30151938..30151956, -
3.3e-40FFCP PHASE1:Hg19::chr19:48102065..48102072,+#_8bbb820e573247695dab06bdc825e9d4p@chr19:48102065..48102072, +
3.3e-40FFCP PHASE1:Hg19::chr15:101417937..101417955,+#_8bbb820e573247695dab06bdc825e9d4p8@ALDH1A3
3.3e-40FFCP PHASE2:Hg19::chr19:48102065..48102072,+#_8bbb820e573247695dab06bdc825e9d4p@chr19:48102065..48102072, +
3.3e-40FFCP PHASE2:Hg19::chr15:101417937..101417955,+#_8bbb820e573247695dab06bdc825e9d4p8@ALDH1A3
1.84e-34FFCP PHASE2:Hg19::chr6:21680979..21680984,+#_a14998072651e16513f78834ad3f8712p@chr6:21680979..21680984, +
1.84e-34FFCP PHASE1:Hg19::chr6:21680979..21680984,+#_a14998072651e16513f78834ad3f8712p@chr6:21680979..21680984, +
2.58e-34FFCP PHASE1:Hg19::chr2:177042702..177042725,-#_fd76cfa9c2e8a79bc000724fe024f07bp2@uc002uku.2
2.58e-34FFCP PHASE2:Hg19::chr2:177042702..177042725,-#_fd76cfa9c2e8a79bc000724fe024f07bp2@uc002uku.2
2.58e-34FFCP PHASE1:Hg19::chr4:183752843..183752848,+#_fd76cfa9c2e8a79bc000724fe024f07bp@chr4:183752843..183752848, +
2.58e-34FFCP PHASE2:Hg19::chr4:183752843..183752848,+#_fd76cfa9c2e8a79bc000724fe024f07bp@chr4:183752843..183752848, +
2.58e-34FFCP PHASE1:Hg19::chr6:21070033..21070038,+#_fd76cfa9c2e8a79bc000724fe024f07bp@chr6:21070033..21070038, +
2.58e-34FFCP PHASE2:Hg19::chr6:21070033..21070038,+#_fd76cfa9c2e8a79bc000724fe024f07bp@chr6:21070033..21070038, +
3.61e-34FFCP PHASE1:Hg19::chr6:22047883..22047886,+#_fc0048b520e58289799a338b420c3791p@chr6:22047883..22047886, +
3.61e-34FFCP PHASE2:Hg19::chr6:22047883..22047886,+#_fc0048b520e58289799a338b420c3791p@chr6:22047883..22047886, +
5.05e-34FFCP PHASE1:Hg19::chr19:34618510..34618515,-#_6c98ed27a30f2c6776fdba689154d1fep@chr19:34618510..34618515, -
5.05e-34FFCP PHASE2:Hg19::chr19:34618510..34618515,-#_6c98ed27a30f2c6776fdba689154d1fep@chr19:34618510..34618515, -
7.48e-30FFCP PHASE2:Hg19::chr6:20402608..20402629,+#_37ecf1c274aa80dec56f2d65d3f6b4acp13@E2F3
7.48e-30FFCP PHASE1:Hg19::chr6:21665095..21665110,-#_37ecf1c274aa80dec56f2d65d3f6b4acp@chr6:21665095..21665110, -
7.48e-30FFCP PHASE2:Hg19::chr6:21665095..21665110,-#_37ecf1c274aa80dec56f2d65d3f6b4acp@chr6:21665095..21665110, -
7.48e-30FFCP PHASE1:Hg19::chr5:54179495..54179507,+#_37ecf1c274aa80dec56f2d65d3f6b4acp@chr5:54179495..54179507, +
7.48e-30FFCP PHASE2:Hg19::chr5:54179495..54179507,+#_37ecf1c274aa80dec56f2d65d3f6b4acp@chr5:54179495..54179507, +
7.48e-30FFCP PHASE1:Hg19::chr1:52629146..52629156,-#_37ecf1c274aa80dec56f2d65d3f6b4acp1@ENST00000412785
7.48e-30FFCP PHASE1:Hg19::chr6:20402608..20402629,+#_37ecf1c274aa80dec56f2d65d3f6b4acp13@E2F3
7.48e-30FFCP PHASE2:Hg19::chr1:52629146..52629156,-#_37ecf1c274aa80dec56f2d65d3f6b4acp1@ENST00000412785
2.37e-29FFCP PHASE1:Hg19::chr2:109605543..109605554,-#_679297234cdb21ecf3de2304e6febac6p4@EDAR
2.37e-29FFCP PHASE2:Hg19::chr2:109605543..109605554,-#_679297234cdb21ecf3de2304e6febac6p4@EDAR
2.37e-29FFCP PHASE1:Hg19::chr6:161454984..161455010,+#_679297234cdb21ecf3de2304e6febac6p14@MAP3K4
2.37e-29FFCP PHASE2:Hg19::chr6:161454984..161455010,+#_679297234cdb21ecf3de2304e6febac6p14@MAP3K4
4.2e-29FFCP PHASE1:Hg19::chrX:104100378..104100381,+#_d9edb038a35017a44793d3cd69236b1cp@chrX:104100378..104100381, +
4.2e-29FFCP PHASE2:Hg19::chrX:104100378..104100381,+#_d9edb038a35017a44793d3cd69236b1cp@chrX:104100378..104100381, +
2.78e-26FFCP PHASE2:Hg19::chr13:107029084..107029103,+#_fd72cab72677c159d6c5fad0088b9b8dp4@LINC00460
2.78e-26FFCP PHASE1:Hg19::chr13:107029084..107029103,+#_fd72cab72677c159d6c5fad0088b9b8dp4@LINC00460
2.78e-26FFCP PHASE1:Hg19::chr6:21933119..21933123,+#_fd72cab72677c159d6c5fad0088b9b8dp@chr6:21933119..21933123, +
2.78e-26FFCP PHASE2:Hg19::chr6:21933119..21933123,+#_fd72cab72677c159d6c5fad0088b9b8dp@chr6:21933119..21933123, +
3.58e-26FFCP PHASE1:Hg19::chr3:104180688..104180692,+#_42f8940ad50d4e840932b576a97741bdp@chr3:104180688..104180692, +
3.58e-26FFCP PHASE2:Hg19::chr3:104180688..104180692,+#_42f8940ad50d4e840932b576a97741bdp@chr3:104180688..104180692, +
4.61e-26FFCP PHASE2:Hg19::chr15:101418003..101418019,+#_e91645cffc493458402d908ef13beec6p5@ALDH1A3
4.61e-26FFCP PHASE1:Hg19::chr7:121156367..121156370,-#_e91645cffc493458402d908ef13beec6p@chr7:121156367..121156370, -
4.61e-26FFCP PHASE2:Hg19::chr1:12239065..12239070,-#_e91645cffc493458402d908ef13beec6p@chr1:12239065..12239070, -
4.61e-26FFCP PHASE2:Hg19::chr7:121156367..121156370,-#_e91645cffc493458402d908ef13beec6p@chr7:121156367..121156370, -
4.61e-26FFCP PHASE1:Hg19::chr9:93960724..93960730,+#_e91645cffc493458402d908ef13beec6p@chr9:93960724..93960730, +
4.61e-26FFCP PHASE1:Hg19::chr15:101418003..101418019,+#_e91645cffc493458402d908ef13beec6p5@ALDH1A3
4.61e-26FFCP PHASE2:Hg19::chr9:93960724..93960730,+#_e91645cffc493458402d908ef13beec6p@chr9:93960724..93960730, +
4.61e-26FFCP PHASE1:Hg19::chr1:12239065..12239070,-#_e91645cffc493458402d908ef13beec6p@chr1:12239065..12239070, -

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