Personal tools

UBERON:0004572: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0004572
|alt_id=
|name=arterial system
|namespace=
|def="The arterial system is the higher-pressure portion of the circulatory system." [BTO:0004690]
|xref=BTO:0004690;;EHDAA2:0000143;;EHDAA:396;;EMAPA:16201;;EMAPA:16371;;MA:0002719;;SCTID:362030008;;VHOG:0000273
|is_a=UBERON:0007798
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The arterial system is the higher-pressure portion of the circulatory system." [BTO:0004690]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004572
|is_a=UBERON:0007798
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=arterial system
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004535
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0004690;;EHDAA2:0000143;;EHDAA:396;;EMAPA:16201;;EMAPA:16371;;MA:0002719;;SCTID:362030008;;VHOG:0000273
}}
}}

Latest revision as of 17:46, 12 September 2014

Name:arterial system
Namespace:FANTOM
Definition:"The arterial system is the higher-pressure portion of the circulatory system." [BTO:0004690]
Xrefs:
links:

BTO:0004690
EHDAA2:0000143
EHDAA:396
EMAPA:16201
EMAPA:16371
MA:0002719
SCTID:362030008

VHOG:0000273

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0007798(vascular system)
part_of:UBERON:0004535(cardiovascular system)



Children

part of:UBERON:0001637 (artery),UBERON:0003509 (arterial blood vessel),UBERON:0004571 (systemic arterial system),UBERON:0004695 (arterial system smooth muscle),UBERON:0004700 (arterial system endothelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004572 (arterial system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.46e-86FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_13df2de88104d0880a461a4bcf6ed6d3p6@Npy1r
1.46e-86FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_13df2de88104d0880a461a4bcf6ed6d3p6@Npy1r
6.62e-84FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_7615dacbdb97fd724c2901869aaeef95p2@SOX17
6.62e-84FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_7615dacbdb97fd724c2901869aaeef95p2@SOX17
5.83e-77FFCP PHASE2:Hg19::chr7:22629318..22629324,+#_62c4c6bda2869e2e648ddcf2a7031a3ep1@ENST00000439823
5.83e-77FFCP PHASE1:Hg19::chr7:22629318..22629324,+#_62c4c6bda2869e2e648ddcf2a7031a3ep1@ENST00000439823
6.68e-73FFCP PHASE1:Hg19::chr11:102668200..102668228,-#_121bf81800a59c81207fd78d26132e0cp4@MMP1
6.68e-73FFCP PHASE2:Hg19::chr11:102668200..102668228,-#_121bf81800a59c81207fd78d26132e0cp4@MMP1
9.34e-73FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_71c972b57cef990e8d9334a0f914a13dp@chr4:7846444..7846449, -
9.34e-73FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_71c972b57cef990e8d9334a0f914a13dp@chr4:7846444..7846449, -
1.67e-71FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_e5f26c2874b67bd91d87561b657a9190p@chr6:53359400..53359406, +
1.67e-71FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_e5f26c2874b67bd91d87561b657a9190p@chr6:53359400..53359406, +
8.51e-71FFCP PHASE2:Hg19::chr4:70653649..70653665,-#_284b64ea4f38187d55b10805edb0daebp4@SULT1B1
8.51e-71FFCP PHASE1:Hg19::chr4:70653649..70653665,-#_284b64ea4f38187d55b10805edb0daebp4@SULT1B1
1.15e-70FFCP PHASE1:Hg19::chr22:21138313..21138336,+#_dce3d4312745715f6085c113d7868931p@chr22:21138313..21138336, +
1.15e-70FFCP PHASE2:Hg19::chr22:21138313..21138336,+#_dce3d4312745715f6085c113d7868931p@chr22:21138313..21138336, +
1.58e-70FFCP PHASE2:Hg19::chr4:70653673..70653688,-#_2cfa63035254608e15132a39b882fc73p3@SULT1B1
1.58e-70FFCP PHASE1:Hg19::chr4:70653673..70653688,-#_2cfa63035254608e15132a39b882fc73p3@SULT1B1
2.66e-70FFCP PHASE1:Hg19::chr11:102667477..102667490,-#_eae88f8f1ff351835c38ff63109c8903p@chr11:102667477..102667490, -
2.66e-70FFCP PHASE2:Hg19::chr11:102667477..102667490,-#_eae88f8f1ff351835c38ff63109c8903p@chr11:102667477..102667490, -
7.36e-70FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_f49e02332dac794ff0ee4904a19f1d5bp5@Npy1r
7.36e-70FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_f49e02332dac794ff0ee4904a19f1d5bp5@Npy1r
9.2e-70FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_d04e86079b2e93405bdeced8a711b1adp@chr11:102661517..102661541, -
9.2e-70FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_d04e86079b2e93405bdeced8a711b1adp@chr11:102661517..102661541, -
2.47e-69FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_7413fe77373b844a675586cc703a78f0p@chr2:65009852..65009866, -
2.47e-69FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_7413fe77373b844a675586cc703a78f0p@chr2:65009852..65009866, -
3.23e-69FFCP PHASE1:Hg19::chr4:54931911..54931926,-#_c0da1ac13fffd53607eb1cb9cee5b997p@chr4:54931911..54931926, -
3.23e-69FFCP PHASE2:Hg19::chr4:54931911..54931926,-#_c0da1ac13fffd53607eb1cb9cee5b997p@chr4:54931911..54931926, -
9.21e-69FFCP PHASE1:Hg19::chr14:23236579..23236596,+#_b6aa936dfc031b36f6352517f2ff0538p5@OXA1L
9.21e-69FFCP PHASE2:Hg19::chr14:23236579..23236596,+#_b6aa936dfc031b36f6352517f2ff0538p5@OXA1L
1.74e-68FFCP PHASE2:Hg19::chr3:30334038..30334060,+#_cb67c589d08c02dc09e6b6d92c5aa49fp@chr3:30334038..30334060, +
1.74e-68FFCP PHASE1:Hg19::chr3:30334038..30334060,+#_cb67c589d08c02dc09e6b6d92c5aa49fp@chr3:30334038..30334060, +
3.58e-68FFCP PHASE2:Hg19::chr3:149258838..149258848,-#_45d92eb8e10317c65c04d423365cb8dfp24@WWTR1
3.58e-68FFCP PHASE1:Hg19::chr3:149258838..149258848,-#_45d92eb8e10317c65c04d423365cb8dfp24@WWTR1
1.03e-67FFCP PHASE1:Hg19::chr22:21138343..21138378,+#_9a7473b9bb6a3ea2a6a93a88474e3b7bp@chr22:21138343..21138378, +
1.03e-67FFCP PHASE2:Hg19::chr22:21138343..21138378,+#_9a7473b9bb6a3ea2a6a93a88474e3b7bp@chr22:21138343..21138378, +
2.74e-67FFCP PHASE2:Hg19::chr11:102668074..102668126,-#_1ec40654d797f1c7a846f689078b7632p3@MMP1
2.74e-67FFCP PHASE1:Hg19::chr11:102668074..102668126,-#_1ec40654d797f1c7a846f689078b7632p3@MMP1
1.26e-66FFCP PHASE2:Hg19::chr11:102668178..102668206,+#_03ad6a2d4f0b447485e85772b86472c9p@chr11:102668178..102668206, +
1.26e-66FFCP PHASE1:Hg19::chr11:102668178..102668206,+#_03ad6a2d4f0b447485e85772b86472c9p@chr11:102668178..102668206, +
4.64e-66FFCP PHASE2:Hg19::chr11:102668016..102668028,-#_34d0abf5c22f1fed046e597ac92ce6b7p5@MMP1
4.64e-66FFCP PHASE1:Hg19::chr11:102668016..102668028,-#_34d0abf5c22f1fed046e597ac92ce6b7p5@MMP1
2.83e-65FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_bdb35e22f665fac53a38e0821847d151p5@Adamts2
2.83e-65FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_bdb35e22f665fac53a38e0821847d151p5@Adamts2
2.83e-65FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_bdb35e22f665fac53a38e0821847d151p@chr8:69228447..69228492, +
2.83e-65FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_bdb35e22f665fac53a38e0821847d151p@chr8:69228447..69228492, +
2.83e-65FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_bdb35e22f665fac53a38e0821847d151p@chr2:178190171..178190178, +
2.83e-65FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_bdb35e22f665fac53a38e0821847d151p@chr17:87574327..87574332, +
2.83e-65FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_bdb35e22f665fac53a38e0821847d151p@chr2:112043522..112043530, -
2.83e-65FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_bdb35e22f665fac53a38e0821847d151p@chrX:160839744..160839754, +
2.83e-65FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_bdb35e22f665fac53a38e0821847d151p@chrX:160839744..160839754, +
2.83e-65FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_bdb35e22f665fac53a38e0821847d151p@chr2:112043522..112043530, -
2.83e-65FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_bdb35e22f665fac53a38e0821847d151p@chr2:178190171..178190178, +
2.83e-65FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_bdb35e22f665fac53a38e0821847d151p@chr17:87574327..87574332, +
2.83e-65FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_bdb35e22f665fac53a38e0821847d151p@chr17:14827154..14827169, -
2.83e-65FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_bdb35e22f665fac53a38e0821847d151p@chr17:14827154..14827169, -
2.83e-65FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_bdb35e22f665fac53a38e0821847d151p@chr17:14802633..14802637, -
2.83e-65FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_bdb35e22f665fac53a38e0821847d151p@chr17:14802633..14802637, -
1.11e-64FFCP PHASE2:Hg19::chr11:102668708..102668742,+#_81ee5306ca4b6eb15bb55a2c4e56d0ecp@chr11:102668708..102668742, +
1.11e-64FFCP PHASE1:Hg19::chr11:102668708..102668742,+#_81ee5306ca4b6eb15bb55a2c4e56d0ecp@chr11:102668708..102668742, +
9.18e-63FFCP PHASE2:Hg19::chr11:102662162..102662217,-#_1cef6ffdfead37f724550c8e5d1aa4acp@chr11:102662162..102662217, -
9.18e-63FFCP PHASE1:Hg19::chr11:102662162..102662217,-#_1cef6ffdfead37f724550c8e5d1aa4acp@chr11:102662162..102662217, -
1.65e-60FFCP PHASE1:Hg19::chr12:96830430..96830450,+#_44271b917661da54875c665cd6356848p@chr12:96830430..96830450, +
1.65e-60FFCP PHASE2:Hg19::chr12:96830430..96830450,+#_44271b917661da54875c665cd6356848p@chr12:96830430..96830450, +
6.48e-58FFCP PHASE1:Hg19::chr10:4823096..4823144,-#_5e880b390c2df41934c5ee918095b6d7p@chr10:4823096..4823144, -
6.48e-58FFCP PHASE2:Hg19::chr10:4823096..4823144,-#_5e880b390c2df41934c5ee918095b6d7p@chr10:4823096..4823144, -
3.35e-57FFCP PHASE2:Hg19::chr11:102661061..102661115,-#_006118f5165cad4dc5578dab847069cdp@chr11:102661061..102661115, -
3.35e-57FFCP PHASE1:Hg19::chr11:102661061..102661115,-#_006118f5165cad4dc5578dab847069cdp@chr11:102661061..102661115, -
1.03e-56FFCP PHASE1:Hg19::chr3:106484411..106484418,+#_f0ce3f9622e985ca24500a3c855cce63p@chr3:106484411..106484418, +
1.03e-56FFCP PHASE2:Hg19::chr3:106484411..106484418,+#_f0ce3f9622e985ca24500a3c855cce63p@chr3:106484411..106484418, +
6.26e-56FFCP PHASE2:Hg19::chr5:54281535..54281547,-#_9d52a7e33fe43a34acb37e3cdb2eb4dfp2@ESM1
6.26e-56FFCP PHASE1:Hg19::chr5:54281535..54281547,-#_9d52a7e33fe43a34acb37e3cdb2eb4dfp2@ESM1
1.54e-55FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_b8f0f09e28a9b72b42d91cf02687d6e0p@chr2:134548872..134548879, -
1.54e-55FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_b8f0f09e28a9b72b42d91cf02687d6e0p@chr2:134548872..134548879, -
3.85e-55FFCP PHASE1:Hg19::chr4:145567563..145567572,+#_9d6902b4d057b1782c12318814ec54f2p8@HHIP
3.85e-55FFCP PHASE2:Hg19::chr4:145567563..145567572,+#_9d6902b4d057b1782c12318814ec54f2p8@HHIP
4.21e-55FFCP PHASE2:Hg19::chr11:102663449..102663467,-#_4235e203993e192ab4c5200dc5c6fcd3p@chr11:102663449..102663467, -
4.21e-55FFCP PHASE1:Hg19::chr11:102663449..102663467,-#_4235e203993e192ab4c5200dc5c6fcd3p@chr11:102663449..102663467, -
7.65e-55FFCP PHASE1:Hg19::chr11:102667434..102667447,-#_9d30ea0a46c171748758c83bc7cec514p@chr11:102667434..102667447, -
7.65e-55FFCP PHASE2:Hg19::chr11:102667434..102667447,-#_9d30ea0a46c171748758c83bc7cec514p@chr11:102667434..102667447, -
2.37e-54FFCP PHASE1:Hg19::chr15:39544232..39544238,+#_7ad49b744e83d980bc27a0a03079593bp@chr15:39544232..39544238, +
2.37e-54FFCP PHASE2:Hg19::chr15:39544232..39544238,+#_7ad49b744e83d980bc27a0a03079593bp@chr15:39544232..39544238, +
7.57e-54FFCP PHASE2:Hg19::chr11:102667504..102667527,-#_3112a8e690702aaca2d68a673def8f01p@chr11:102667504..102667527, -
7.57e-54FFCP PHASE1:Hg19::chr11:102667504..102667527,-#_3112a8e690702aaca2d68a673def8f01p@chr11:102667504..102667527, -
1.03e-53FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_736d7a24ac2628b0eb4ce3970013181dp@chr4:74703497..74703511, +
1.03e-53FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_736d7a24ac2628b0eb4ce3970013181dp@chr4:74703497..74703511, +
1.19e-53FFCP PHASE2:Hg19::chr4:54931877..54931892,-#_c702b8756b61c37beee02deed753d057p@chr4:54931877..54931892, -
1.19e-53FFCP PHASE1:Hg19::chr4:54931877..54931892,-#_c702b8756b61c37beee02deed753d057p@chr4:54931877..54931892, -
2.25e-53FFCP PHASE2:Hg19::chr1:186946626..186946652,+#_230c7fe4246d4228befe9681a6b4593ap@chr1:186946626..186946652, +
2.25e-53FFCP PHASE1:Hg19::chr1:186946626..186946652,+#_230c7fe4246d4228befe9681a6b4593ap@chr1:186946626..186946652, +
4.23e-52FFCP PHASE2:Hg19::chr4:145567538..145567544,+#_35bab749e7ec8d2a2715a8813cdc34bep13@HHIP
4.23e-52FFCP PHASE1:Hg19::chr4:145567538..145567544,+#_35bab749e7ec8d2a2715a8813cdc34bep13@HHIP
6.05e-52FFCP PHASE2:Hg19::chr11:12182490..12182503,+#_bc76db24e087d79d3c0ae6379c7acdd4p8@MICAL2
6.05e-52FFCP PHASE1:Hg19::chr11:12182490..12182503,+#_bc76db24e087d79d3c0ae6379c7acdd4p8@MICAL2
5.22e-51FFCP PHASE2:Hg19::chr8:90556171..90556173,+#_5595b150193cdeb65c9dc3f5b8410055p@chr8:90556171..90556173, +
5.22e-51FFCP PHASE1:Hg19::chr8:90556171..90556173,+#_5595b150193cdeb65c9dc3f5b8410055p@chr8:90556171..90556173, +
9.34e-51FFCP PHASE2:Mm9::chr17:75578018..75578028,+#_ed8490075c43613d612cc77a87705808p14@Ltbp1
9.34e-51FFCP PHASE1:Mm9::chr17:75578018..75578028,+#_ed8490075c43613d612cc77a87705808p14@Ltbp1
1.21e-50FFCP PHASE1:Hg19::chr2:228735763..228735772,+#_b48a4faef8a4c469b5e2ebbfebe61ed9p2@WDR69
1.21e-50FFCP PHASE2:Hg19::chr2:228735763..228735772,+#_b48a4faef8a4c469b5e2ebbfebe61ed9p2@WDR69

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004572&oldid=3277667"