UBERON:0003714: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=FMA definition includes vasculature | |comment=FMA definition includes vasculature | ||
|created_by= | |created_by= | ||
| | |def="Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from=UBERON:0004755 | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003714 | |||
|is_a=UBERON:0000479 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=neural tissue | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001016 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO]" xsd:string | ||
| | |subset= | ||
| | |synonym="nerve tissue" EXACT [FMA:9642];;"nervous tissue" EXACT [FMA:9642];;"portion of neural tissue" EXACT [FMA:9642] | ||
|union_of= | |||
|xref=AAO:0000325;;AEO:0000123;;EHDAA2:0003123;;FMA:9642;;GAID:609;;MESH:A.08.561;;ncithesaurus:Nervous_Tissue;;OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ;;SCTID:91728009 | |||
}} | }} | ||
Latest revision as of 17:41, 12 September 2014
| Name: | neural tissue | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642] | ||
| Xrefs: |
| ||
| Synonyms: |
"nerve tissue" EXACT [FMA:9642] "nervous tissue" EXACT [FMA:9642] "portion of neural tissue" EXACT [FMA:9642] | ||
| Comments: | FMA definition includes vasculature |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue) |
|---|---|
| disjoint_from: | UBERON:0004755(skeletal tissue) |
| part_of: | UBERON:0001016(nervous system) |
Children
| is a: | UBERON:0000045 (ganglion),UBERON:0001810 (nerve plexus) |
|---|---|
| disjoint from: | UBERON:0001013 (adipose tissue),UBERON:0002385 (muscle tissue) |
| derives from: | FF:0102912 (neuroepithelioma cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10277-104E7 (optic nerve, donor1)
- 10280-104F1
- 10305-104H8
- 10308-104I2
- 10333-105B9
- 10336-105C3
- 10728-110A8 (neuroepithelioma cell line:SK-N-MC)
- 11959-126C6 (Neurons - spiral ganglion, pool1)
Mouse (Mus musculus)
- 10277-104E7 (optic nerve, donor1)
- 10280-104F1
- 10305-104H8
- 10308-104I2
- 10333-105B9
- 10336-105C3
- 10728-110A8 (neuroepithelioma cell line:SK-N-MC)
- 11959-126C6 (Neurons - spiral ganglion, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003714 (neural tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.75e-130 | FFCP PHASE2:Hg19::chr2:212586166..212586168,-#_f779dacc1bc39f297c035798afc856a8 | p@chr2:212586166..212586168, - |
| 1.75e-130 | FFCP PHASE1:Hg19::chr2:212586166..212586168,-#_f779dacc1bc39f297c035798afc856a8 | p@chr2:212586166..212586168, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:21339635..21339636,-#_33bae9ebb65e06dd32204f9d07c666ed | p@chr1:21339635..21339636, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_33bae9ebb65e06dd32204f9d07c666ed | p@chr12:57628762..57628773, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:21339635..21339636,-#_33bae9ebb65e06dd32204f9d07c666ed | p@chr1:21339635..21339636, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_33bae9ebb65e06dd32204f9d07c666ed | p@chr12:57628762..57628773, - |
| 5.22e-79 | FFCP PHASE2:Hg19::chr8:6081804..6081807,-#_dee53416bc5436e6f221e2232f8b2f4e | p@chr8:6081804..6081807, - |
| 5.22e-79 | FFCP PHASE1:Hg19::chr8:6081804..6081807,-#_dee53416bc5436e6f221e2232f8b2f4e | p@chr8:6081804..6081807, - |
| 2.03e-66 | FFCP PHASE2:Hg19::chr8:27057116..27057118,+#_c6b72cfb226974d668817d576171e1fd | p@chr8:27057116..27057118, + |
| 2.03e-66 | FFCP PHASE1:Hg19::chr8:27057116..27057118,+#_c6b72cfb226974d668817d576171e1fd | p@chr8:27057116..27057118, + |
| 2.84e-66 | FFCP PHASE2:Hg19::chr11:16629621..16629629,-#_d1c0458216e37842ef4be6df0ef9a4cd | p30@SOX6 |
| 2.84e-66 | FFCP PHASE1:Hg19::chr11:16629621..16629629,-#_d1c0458216e37842ef4be6df0ef9a4cd | p30@SOX6 |
| 7.73e-66 | FFCP PHASE2:Hg19::chr2:29703653..29703657,-#_0e13d118c9c2d633aa8057d83f337821 | p@chr2:29703653..29703657, - |
| 7.73e-66 | FFCP PHASE1:Hg19::chr2:29703653..29703657,-#_0e13d118c9c2d633aa8057d83f337821 | p@chr2:29703653..29703657, - |
| 2.0e-56 | FFCP PHASE2:Hg19::chr11:126010526..126010554,-#_521b9313f370a70b37dd4e806affe7c9 | p@chr11:126010526..126010554, - |
| 2.0e-56 | FFCP PHASE1:Hg19::chr11:126010526..126010554,-#_521b9313f370a70b37dd4e806affe7c9 | p@chr11:126010526..126010554, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_6bc149423710c074798d272d1b1e2e53 | p@chr14:105807545..105807554, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_6bc149423710c074798d272d1b1e2e53 | p@chr2:60133192..60133194, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_6bc149423710c074798d272d1b1e2e53 | p@chr7:15056365..15056368, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_6bc149423710c074798d272d1b1e2e53 | p@chr14:105807545..105807554, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr8:37824442..37824447,-#_6bc149423710c074798d272d1b1e2e53 | p9@ADRB3 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr8:12808791..12808798,+#_6bc149423710c074798d272d1b1e2e53 | p28@KIAA1456 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_6bc149423710c074798d272d1b1e2e53 | p@chr18:74702556..74702558, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_6bc149423710c074798d272d1b1e2e53 | p@chr2:60133192..60133194, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_6bc149423710c074798d272d1b1e2e53 | p@chr18:25161980..25161984, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_6bc149423710c074798d272d1b1e2e53 | p@chr5:149250331..149250335, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_6bc149423710c074798d272d1b1e2e53 | p@chr18:74702556..74702558, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_6bc149423710c074798d272d1b1e2e53 | p@chr18:25161980..25161984, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_6bc149423710c074798d272d1b1e2e53 | p@chr4:127394496..127394500, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_6bc149423710c074798d272d1b1e2e53 | p@chr5:151258901..151258902, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_6bc149423710c074798d272d1b1e2e53 | p@chr1:62928606..62928608, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_6bc149423710c074798d272d1b1e2e53 | p@chr2:188432107..188432111, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:22696471..22696505,-#_6bc149423710c074798d272d1b1e2e53 | p@chr1:22696471..22696505, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_6bc149423710c074798d272d1b1e2e53 | p@chr5:149250331..149250335, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr8:37824442..37824447,-#_6bc149423710c074798d272d1b1e2e53 | p9@ADRB3 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_6bc149423710c074798d272d1b1e2e53 | p@chr5:151258901..151258902, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_6bc149423710c074798d272d1b1e2e53 | p@chr4:127394496..127394500, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_6bc149423710c074798d272d1b1e2e53 | p@chr7:15056365..15056368, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_6bc149423710c074798d272d1b1e2e53 | p@chr1:62928606..62928608, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_6bc149423710c074798d272d1b1e2e53 | p@chr2:188432107..188432111, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:22696471..22696505,-#_6bc149423710c074798d272d1b1e2e53 | p@chr1:22696471..22696505, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr8:12808791..12808798,+#_6bc149423710c074798d272d1b1e2e53 | p28@KIAA1456 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:133945378..133945386,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr8:133945378..133945386, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr3:193615743..193615750,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr3:193615743..193615750, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr4:139590958..139590961,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr4:139590958..139590961, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr14:68527802..68527806,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr14:68527802..68527806, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr12:296753..296755,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr12:296753..296755, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:22000519..22000525,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr8:22000519..22000525, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:1361494..1361497,+#_9b72837bdb72ff9efe1143abbdbacba2 | p7@TMEM88B |
| 4.52e-50 | FFCP PHASE1:Hg19::chr12:68567714..68567717,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr12:68567714..68567717, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr17:47107522..47107524,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr17:47107522..47107524, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr16:19586229..19586233,+#_9b72837bdb72ff9efe1143abbdbacba2 | p12@C16orf62 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr12:59444098..59444102,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr12:59444098..59444102, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:37824009..37824022,-#_9b72837bdb72ff9efe1143abbdbacba2 | p3@ADRB3 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:86911063..86911068,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr1:86911063..86911068, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr11:20791058..20791067,+#_9b72837bdb72ff9efe1143abbdbacba2 | p10@NELL1 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr11:79291300..79291301,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr11:79291300..79291301, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr3:163246025..163246029,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr3:163246025..163246029, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr16:55740953..55740956,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr16:55740953..55740956, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr5:172318159..172318160, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr4:155299368..155299375,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr4:155299368..155299375, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:126163123..126163134,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr8:126163123..126163134, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr5:58471631..58471634,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr5:58471631..58471634, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:77789390..77789399,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr7:77789390..77789399, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr2:171939999..171940009,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr2:171939999..171940009, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr17:12935401..12935405,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr17:12935401..12935405, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr14:78718132..78718157,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr14:78718132..78718157, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr8:90420477..90420478,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr8:90420477..90420478, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:16317123..16317126,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr6:16317123..16317126, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr2:242742205..242742253,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr2:242742205..242742253, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:203036812..203036840,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr1:203036812..203036840, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:52006984..52006993,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chrX:52006984..52006993, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr12:296753..296755,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr12:296753..296755, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr11:20791058..20791067,+#_9b72837bdb72ff9efe1143abbdbacba2 | p10@NELL1 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr11:57030314..57030346,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr11:57030314..57030346, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr9:74167667..74167687,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr9:74167667..74167687, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr8:27041770..27041779,+#_9b72837bdb72ff9efe1143abbdbacba2 | p4@ENST00000521408 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr16:55740953..55740956,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr16:55740953..55740956, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr14:76447439..76447452,-#_9b72837bdb72ff9efe1143abbdbacba2 | p18@TGFB3 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr5:103200303..103200307,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr5:103200303..103200307, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:104346803..104346806,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr6:104346803..104346806, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr4:130221053..130221071,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr4:130221053..130221071, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr3:181328472..181328478,+#_9b72837bdb72ff9efe1143abbdbacba2 | p25@SOX2-OT |
| 4.52e-50 | FFCP PHASE2:Hg19::chr16:19586229..19586233,+#_9b72837bdb72ff9efe1143abbdbacba2 | p12@C16orf62 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr11:57030314..57030346,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr11:57030314..57030346, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr3:13992334..13992338, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr11:79291300..79291301,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr11:79291300..79291301, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:169073323..169073334,+#_9b72837bdb72ff9efe1143abbdbacba2 | p4@ENST00000415637 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr14:78718132..78718157,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr14:78718132..78718157, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:1413227..1413230,+#_9b72837bdb72ff9efe1143abbdbacba2 | p2@ATAD3B |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:131884370..131884375,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chrX:131884370..131884375, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr15:36402459..36402465,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr15:36402459..36402465, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr2:97626726..97626741,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr2:97626726..97626741, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr14:68589926..68589929,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr14:68589926..68589929, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr3:27750995..27750997,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr3:27750995..27750997, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr2:29645795..29645797,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr2:29645795..29645797, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:154942133..154942148,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr1:154942133..154942148, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr5:33229308..33229311,-#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr5:33229308..33229311, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr14:76447439..76447452,-#_9b72837bdb72ff9efe1143abbdbacba2 | p18@TGFB3 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_9b72837bdb72ff9efe1143abbdbacba2 | p@chr18:39859562..39859566, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
