Personal tools

UBERON:0003103: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003103
|alt_id=UBERON:XAO_0003041-ZFA_0000496
|name=compound organ
|namespace=
|def="Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [CARO:0000024]
|xref=AAO:0010015;;AEO:0000024;;BILA:0000024;;CARO:0000024;;EHDAA2:0003024;;HAO:0000024;;NIF_GrossAnatomy:birnlex_4;;TADS:0000598;;TAO:0000496;;TGMA:0001837;;XAO:0003041;;ZFA:0000496
|is_a=UBERON:0000062
|synonym="organ" RELATED []
|comment=
|comment=
|alt_id=UBERON:XAO_0003041-ZFA_0000496
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [CARO:0000024]
|subset=organ_slim;;upper_level
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003103
|is_a=UBERON:0000062
|is_obsolete=
|located_in=
|located_in=
|name=compound organ
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=organ_slim;;upper_level
|preceded_by=
|synonym="organ" RELATED []
|union_of=
|xref=AAO:0010015;;AEO:0000024;;BILA:0000024;;CARO:0000024;;EHDAA2:0003024;;HAO:0000024;;NIF_GrossAnatomy:birnlex_4;;TADS:0000598;;TAO:0000496;;TGMA:0001837;;XAO:0003041;;ZFA:0000496
}}
}}

Latest revision as of 17:38, 12 September 2014

Name:compound organ
Namespace:FANTOM
Definition:"Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [CARO:0000024]
Xrefs:
links:

AAO:0010015
AEO:0000024
BILA:0000024
CARO:0000024
EHDAA2:0003024
HAO:0000024
NIF_GrossAnatomy:birnlex_4
TADS:0000598
TAO:0000496
TGMA:0001837
XAO:0003041

ZFA:0000496
Synonyms: "organ" RELATED []
Alt_id: UBERON:XAO_0003041-ZFA_0000496
Subset: organ_slim
upper_level

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000062(organ)



Children

is a:UBERON:0000489 (cavitated compound organ),UBERON:0001005 (respiratory airway),UBERON:0010056 (future tongue),UBERON:0015228 (circulatory organ)
part of:UBERON:0000471 (compound organ component)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003103 (compound organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.48e-35FFCP PHASE1:Mm9::chr1:137737483..137737497,-#_0beeec9b973048ea204a788ea3e89731p@chr1:137737483..137737497, -
4.48e-35FFCP PHASE2:Mm9::chr1:137737483..137737497,-#_0beeec9b973048ea204a788ea3e89731p@chr1:137737483..137737497, -
1.3e-34FFCP PHASE2:Mm9::chr5:72895739..72895759,-#_ca8e892ac34523759771f4a50be162adp4@Corin
1.3e-34FFCP PHASE1:Mm9::chr5:72895739..72895759,-#_ca8e892ac34523759771f4a50be162adp4@Corin
1.5e-33FFCP PHASE1:Hg19::chr17:77018953..77018966,+#_e0b9bfbf7b471058b4bf858e39e487edp@chr17:77018953..77018966, +
1.5e-33FFCP PHASE2:Hg19::chr17:77018953..77018966,+#_e0b9bfbf7b471058b4bf858e39e487edp@chr17:77018953..77018966, +
3.72e-33FFCP PHASE1:Mm9::chr9:24549775..24549776,-#_39540eccc3443fe98f8b4c26bf35e7dfp@chr9:24549775..24549776, -
3.72e-33FFCP PHASE1:Mm9::chr5:58108164..58108178,+#_39540eccc3443fe98f8b4c26bf35e7dfp@chr5:58108164..58108178, +
3.72e-33FFCP PHASE2:Mm9::chr1:137747392..137747402,-#_39540eccc3443fe98f8b4c26bf35e7dfp@chr1:137747392..137747402, -
3.72e-33FFCP PHASE2:Mm9::chr5:58108164..58108178,+#_39540eccc3443fe98f8b4c26bf35e7dfp@chr5:58108164..58108178, +
3.72e-33FFCP PHASE2:Mm9::chr4:147375434..147375447,+#_39540eccc3443fe98f8b4c26bf35e7dfp@chr4:147375434..147375447, +
3.72e-33FFCP PHASE2:Mm9::chr9:24549775..24549776,-#_39540eccc3443fe98f8b4c26bf35e7dfp@chr9:24549775..24549776, -
3.72e-33FFCP PHASE1:Mm9::chr4:147375434..147375447,+#_39540eccc3443fe98f8b4c26bf35e7dfp@chr4:147375434..147375447, +
3.72e-33FFCP PHASE1:Mm9::chr1:137747392..137747402,-#_39540eccc3443fe98f8b4c26bf35e7dfp@chr1:137747392..137747402, -
4.24e-32FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_88add7654c2f457efe63f0c4b1ae097cp4@PAX2
4.24e-32FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_88add7654c2f457efe63f0c4b1ae097cp4@PAX2
1.08e-31FFCP PHASE1:Mm9::chr1:137747348..137747368,+#_07169f417335e7b8d8c2a8467c1c973ep@chr1:137747348..137747368, +
1.08e-31FFCP PHASE2:Mm9::chr1:137747348..137747368,+#_07169f417335e7b8d8c2a8467c1c973ep@chr1:137747348..137747368, +
1.12e-31FFCP PHASE2:Mm9::chr6:97879802..97879816,+#_26a609c3b0a4aa613dfd829b5410433cp5@Mitf
1.12e-31FFCP PHASE1:Mm9::chr6:97879802..97879816,+#_26a609c3b0a4aa613dfd829b5410433cp5@Mitf
2.09e-31FFCP PHASE2:Mm9::chr4:140980456..140980463,+#_912aa307fdb54113f25c1cacb201d0cap@chr4:140980456..140980463, +
2.09e-31FFCP PHASE1:Mm9::chr4:140980456..140980463,+#_912aa307fdb54113f25c1cacb201d0cap@chr4:140980456..140980463, +
3.03e-31FFCP PHASE1:Mm9::chr14:55584272..55584298,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55584272..55584298, -
3.03e-31FFCP PHASE1:Mm9::chr1:137744668..137744681,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137744668..137744681, -
3.03e-31FFCP PHASE2:Mm9::chr1:137744668..137744681,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137744668..137744681, -
3.03e-31FFCP PHASE1:Mm9::chr1:137743272..137743307,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137743272..137743307, +
3.03e-31FFCP PHASE2:Mm9::chr14:55586837..55586880,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55586837..55586880, -
3.03e-31FFCP PHASE1:Mm9::chr14:55568937..55568988,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55568937..55568988, -
3.03e-31FFCP PHASE2:Mm9::chr1:137744333..137744352,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137744333..137744352, -
3.03e-31FFCP PHASE1:Mm9::chr1:137747289..137747313,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137747289..137747313, +
3.03e-31FFCP PHASE2:Mm9::chr14:55572120..55572173,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55572120..55572173, +
3.03e-31FFCP PHASE2:Mm9::chr14:55568790..55568803,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55568790..55568803, -
3.03e-31FFCP PHASE2:Mm9::chr1:137747382..137747385,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137747382..137747385, -
3.03e-31FFCP PHASE2:Mm9::chr14:55563577..55563611,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55563577..55563611, -
3.03e-31FFCP PHASE2:Mm9::chr14:55581579..55581620,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55581579..55581620, -
3.03e-31FFCP PHASE1:Mm9::chr19:36193772..36193793,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr19:36193772..36193793, -
3.03e-31FFCP PHASE1:Mm9::chr18:65553662..65553675,-#_d362cd1c14ce086f2ce0877fdd6a128fp2@Alpk2
3.03e-31FFCP PHASE2:Mm9::chr14:55571909..55571953,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55571909..55571953, -
3.03e-31FFCP PHASE2:Mm9::chr1:137744550..137744565,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137744550..137744565, +
3.03e-31FFCP PHASE1:Mm9::chr15:88850827..88850850,+#_d362cd1c14ce086f2ce0877fdd6a128fp2@Mov10l1
3.03e-31FFCP PHASE1:Mm9::chr14:55579265..55579297,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55579265..55579297, -
3.03e-31FFCP PHASE1:Mm9::chr1:137744611..137744621,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137744611..137744621, +
3.03e-31FFCP PHASE2:Mm9::chr1:137744636..137744654,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137744636..137744654, +
3.03e-31FFCP PHASE1:Mm9::chr1:137747953..137747967,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137747953..137747967, -
3.03e-31FFCP PHASE2:Mm9::chr15:88850827..88850850,+#_d362cd1c14ce086f2ce0877fdd6a128fp2@Mov10l1
3.03e-31FFCP PHASE2:Mm9::chr14:55584197..55584239,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55584197..55584239, -
3.03e-31FFCP PHASE2:Mm9::chr5:120286706..120286736,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr5:120286706..120286736, +
3.03e-31FFCP PHASE1:Mm9::chr1:137744333..137744352,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137744333..137744352, -
3.03e-31FFCP PHASE1:Mm9::chr14:55572120..55572173,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55572120..55572173, +
3.03e-31FFCP PHASE2:Mm9::chr14:55568737..55568746,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55568737..55568746, -
3.03e-31FFCP PHASE2:Mm9::chr1:137747289..137747313,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137747289..137747313, +
3.03e-31FFCP PHASE1:Mm9::chr14:55584197..55584239,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55584197..55584239, -
3.03e-31FFCP PHASE1:Mm9::chr14:55565785..55565833,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55565785..55565833, -
3.03e-31FFCP PHASE1:Mm9::chr11:58815923..58815951,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr11:58815923..58815951, -
3.03e-31FFCP PHASE1:Mm9::chr14:55581579..55581620,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55581579..55581620, -
3.03e-31FFCP PHASE2:Mm9::chr14:55568937..55568988,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55568937..55568988, -
3.03e-31FFCP PHASE1:Mm9::chr14:55568790..55568803,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55568790..55568803, -
3.03e-31FFCP PHASE2:Mm9::chr4:140980347..140980352,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr4:140980347..140980352, +
3.03e-31FFCP PHASE2:Mm9::chr1:137743272..137743307,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137743272..137743307, +
3.03e-31FFCP PHASE1:Mm9::chr14:55584663..55584731,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55584663..55584731, -
3.03e-31FFCP PHASE1:Mm9::chr1:137745434..137745445,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137745434..137745445, +
3.03e-31FFCP PHASE1:Mm9::chr1:137744550..137744565,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137744550..137744565, +
3.03e-31FFCP PHASE2:Mm9::chr18:65553662..65553675,-#_d362cd1c14ce086f2ce0877fdd6a128fp2@Alpk2
3.03e-31FFCP PHASE2:Mm9::chr14:55584663..55584731,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55584663..55584731, -
3.03e-31FFCP PHASE1:Mm9::chr1:137747382..137747385,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137747382..137747385, -
3.03e-31FFCP PHASE2:Mm9::chr11:65461897..65461929,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr11:65461897..65461929, -
3.03e-31FFCP PHASE2:Mm9::chr4:147375901..147375913,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr4:147375901..147375913, +
3.03e-31FFCP PHASE1:Mm9::chr5:120286706..120286736,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr5:120286706..120286736, +
3.03e-31FFCP PHASE2:Mm9::chr14:55579265..55579297,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55579265..55579297, -
3.03e-31FFCP PHASE1:Mm9::chr1:137744636..137744654,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137744636..137744654, +
3.03e-31FFCP PHASE1:Mm9::chr11:65461897..65461929,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr11:65461897..65461929, -
3.03e-31FFCP PHASE1:Mm9::chr14:55571909..55571953,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55571909..55571953, -
3.03e-31FFCP PHASE1:Mm9::chr4:140980347..140980352,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr4:140980347..140980352, +
3.03e-31FFCP PHASE2:Mm9::chr1:137747953..137747967,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137747953..137747967, -
3.03e-31FFCP PHASE2:Mm9::chr14:55584272..55584298,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55584272..55584298, -
3.03e-31FFCP PHASE2:Mm9::chr14:55565785..55565833,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55565785..55565833, -
3.03e-31FFCP PHASE1:Mm9::chr4:147375901..147375913,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr4:147375901..147375913, +
3.03e-31FFCP PHASE1:Mm9::chr14:55563577..55563611,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55563577..55563611, -
3.03e-31FFCP PHASE2:Mm9::chr11:58815923..58815951,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr11:58815923..58815951, -
3.03e-31FFCP PHASE2:Mm9::chr1:137745434..137745445,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137745434..137745445, +
3.03e-31FFCP PHASE2:Mm9::chr19:36193772..36193793,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr19:36193772..36193793, -
3.03e-31FFCP PHASE2:Mm9::chr1:137744611..137744621,+#_d362cd1c14ce086f2ce0877fdd6a128fp@chr1:137744611..137744621, +
3.03e-31FFCP PHASE1:Mm9::chr14:55586837..55586880,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55586837..55586880, -
3.03e-31FFCP PHASE1:Mm9::chr14:55568737..55568746,-#_d362cd1c14ce086f2ce0877fdd6a128fp@chr14:55568737..55568746, -
3.06e-31FFCP PHASE1:Mm9::chr12:113728951..113728965,+#_54300780f244d46cdcf505eaf287e412p@chr12:113728951..113728965, +
3.06e-31FFCP PHASE2:Mm9::chr12:113728951..113728965,+#_54300780f244d46cdcf505eaf287e412p@chr12:113728951..113728965, +
3.21e-31FFCP PHASE1:Mm9::chr19:36187511..36187515,-#_6b28463fd55b38b0bd8facc0e01c3989p@chr19:36187511..36187515, -
3.21e-31FFCP PHASE2:Mm9::chr4:147375200..147375220,+#_6b28463fd55b38b0bd8facc0e01c3989p@chr4:147375200..147375220, +
3.21e-31FFCP PHASE1:Mm9::chr4:147375200..147375220,+#_6b28463fd55b38b0bd8facc0e01c3989p@chr4:147375200..147375220, +
3.21e-31FFCP PHASE2:Mm9::chr19:36187511..36187515,-#_6b28463fd55b38b0bd8facc0e01c3989p@chr19:36187511..36187515, -
7.8e-31FFCP PHASE2:Hg19::chr17:77019002..77019027,+#_1078399d4c1891ff96110231886ebb8ep@chr17:77019002..77019027, +
7.8e-31FFCP PHASE1:Hg19::chr17:77019002..77019027,+#_1078399d4c1891ff96110231886ebb8ep@chr17:77019002..77019027, +
8.51e-30FFCP PHASE2:Mm9::chr4:140978538..140978554,-#_072ab4a2ce34acbd90fedc5817fcd486p@chr4:140978538..140978554, -
8.51e-30FFCP PHASE1:Mm9::chr4:140978538..140978554,-#_072ab4a2ce34acbd90fedc5817fcd486p@chr4:140978538..140978554, -
1.08e-29FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_25239b76cc45a7e24fb8041489efc583p3@PAX2
1.08e-29FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_25239b76cc45a7e24fb8041489efc583p3@PAX2
1.59e-29FFCP PHASE1:Mm9::chr1:137742152..137742184,-#_e54122f6abaf0589ca83438ca33493ffp@chr1:137742152..137742184, -
1.59e-29FFCP PHASE2:Mm9::chr1:137742152..137742184,-#_e54122f6abaf0589ca83438ca33493ffp@chr1:137742152..137742184, -
1.59e-29FFCP PHASE2:Mm9::chrX:156380854..156380877,+#_e54122f6abaf0589ca83438ca33493ffp15@Sh3kbp1
1.59e-29FFCP PHASE1:Mm9::chrX:156380854..156380877,+#_e54122f6abaf0589ca83438ca33493ffp15@Sh3kbp1

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003103&oldid=3277521"