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{{UBERON
{{UBERON
|id=UBERON:0003057
|alt_id=UBERON:XAO_0000046-ZFA_0007017
|name=chordal neural plate
|namespace=
|def="The portion of neural plate posterior to the mid-hindbrain junction." [XB:curator]
|xref=TAO:0007017;;VHOG:0001201;;XAO:0000046;;ZFA:0007017
|is_a=UBERON:0005423
|synonym="posterior neural plate" RELATED []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:XAO_0000046-ZFA_0007017
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The portion of neural plate posterior to the mid-hindbrain junction." [XB:curator]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003057
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=chordal neural plate
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003075
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="posterior neural plate" RELATED []
|union_of=
|xref=TAO:0007017;;VHOG:0001201;;XAO:0000046;;ZFA:0007017
}}
}}

Latest revision as of 17:35, 12 September 2014

Name:chordal neural plate
Namespace:FANTOM
Definition:"The portion of neural plate posterior to the mid-hindbrain junction." [XB:curator]
Xrefs:
links:

TAO:0007017
VHOG:0001201
XAO:0000046

ZFA:0007017
Synonyms: "posterior neural plate" RELATED []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:XAO_0000046-ZFA_0007017

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
part_of:UBERON:0003075(neural plate)



Children

develops from:UBERON:0003076 (posterior neural tube)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003057 (chordal neural plate), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.31e-117FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_652bfd2b9d37248d039b0178a0da7d63p1@SLC6A5
2.31e-117FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_652bfd2b9d37248d039b0178a0da7d63p1@SLC6A5
5.68e-99FFCP PHASE2:Hg19::chr9:73736442..73736451,-#_1ef39a3320d90e9ad7127418c8adc2f1p9@TRPM3
5.68e-99FFCP PHASE1:Hg19::chr9:73736442..73736451,-#_1ef39a3320d90e9ad7127418c8adc2f1p9@TRPM3
2.92e-96FFCP PHASE1:Hg19::chr10:130489605..130489614,-#_42482adf9a499861174a6d4d1b0ec6aap@chr10:130489605..130489614, -
2.92e-96FFCP PHASE2:Hg19::chr10:130489605..130489614,-#_42482adf9a499861174a6d4d1b0ec6aap@chr10:130489605..130489614, -
1.43e-91FFCP PHASE1:Hg19::chr2:69741832..69741847,-#_6a91f8af51f1c9a0e5690b9bac33c7e7p@chr2:69741832..69741847, -
1.43e-91FFCP PHASE2:Hg19::chr2:69741832..69741847,-#_6a91f8af51f1c9a0e5690b9bac33c7e7p@chr2:69741832..69741847, -
2.4e-88FFCP PHASE2:Hg19::chr2:72381655..72381673,-#_42be2dc86faa84033d4da29fcb4d7190p@chr2:72381655..72381673, -
2.4e-88FFCP PHASE1:Hg19::chr2:72381655..72381673,-#_42be2dc86faa84033d4da29fcb4d7190p@chr2:72381655..72381673, -
3.88e-87FFCP PHASE2:Hg19::chr5:151304948..151304984,-#_d7e37ffc7c20cd655bc04cdf486c4002p@chr5:151304948..151304984, -
3.88e-87FFCP PHASE1:Hg19::chr5:151304948..151304984,-#_d7e37ffc7c20cd655bc04cdf486c4002p@chr5:151304948..151304984, -
4.42e-84FFCP PHASE1:Hg19::chr5:151304337..151304405,-#_24c21c67783f3b98d78fd06568658804p1@GLRA1
4.42e-84FFCP PHASE2:Hg19::chr5:151304337..151304405,-#_24c21c67783f3b98d78fd06568658804p1@GLRA1
1.7e-81FFCP PHASE2:Hg19::chrX:106692537..106692551,+#_bd339801162dd52a3cd272d79f8f081ep@chrX:106692537..106692551, +
1.7e-81FFCP PHASE1:Hg19::chrX:106692537..106692551,+#_bd339801162dd52a3cd272d79f8f081ep@chrX:106692537..106692551, +
1.74e-81FFCP PHASE2:Hg19::chr9:8779377..8779397,-#_2f59db7decb06231a4a76d1771783a07p@chr9:8779377..8779397, -
1.74e-81FFCP PHASE1:Hg19::chr9:8779377..8779397,-#_2f59db7decb06231a4a76d1771783a07p@chr9:8779377..8779397, -
2.77e-80FFCP PHASE1:Hg19::chr9:128998376..128998387,-#_ff8974e12be8cc7c3bcb38c45b529377p@chr9:128998376..128998387, -
2.77e-80FFCP PHASE2:Hg19::chr9:128998376..128998387,-#_ff8974e12be8cc7c3bcb38c45b529377p@chr9:128998376..128998387, -
3.36e-79FFCP PHASE1:Hg19::chr19:29493486..29493497,+#_063c1aeeecef954af86444a89605200dp2@LOC100505835
3.36e-79FFCP PHASE2:Hg19::chr19:29493486..29493497,+#_063c1aeeecef954af86444a89605200dp2@LOC100505835
1.03e-78FFCP PHASE1:Hg19::chr2:25720324..25720333,-#_b00ac2007be06e97c28c60d169400dd5p15@DTNB
1.03e-78FFCP PHASE2:Hg19::chr2:25720324..25720333,-#_b00ac2007be06e97c28c60d169400dd5p15@DTNB
2.25e-76FFCP PHASE1:Hg19::chr17:42983316..42983326,-#_e3f5893f6126ff4373813a5e7694ae7cp@chr17:42983316..42983326, -
2.25e-76FFCP PHASE2:Hg19::chr17:42983316..42983326,-#_e3f5893f6126ff4373813a5e7694ae7cp@chr17:42983316..42983326, -
1.02e-75FFCP PHASE1:Hg19::chr17:10741337..10741344,-#_d2e2868c6005563cd3a2fd617b94990fp3@PIRT
1.02e-75FFCP PHASE2:Hg19::chr17:10741337..10741344,-#_d2e2868c6005563cd3a2fd617b94990fp3@PIRT
1.18e-75FFCP PHASE1:Hg19::chr17:11143564..11143575,+#_8bb2bcc7a6819837fb26bed99f447bf6p@chr17:11143564..11143575, +
1.18e-75FFCP PHASE2:Hg19::chr17:11143564..11143575,+#_8bb2bcc7a6819837fb26bed99f447bf6p@chr17:11143564..11143575, +
6.09e-73FFCP PHASE1:Hg19::chr2:25720352..25720388,-#_6d6c0bf7116e5b3bdcb6f54024aa941fp7@DTNB
6.09e-73FFCP PHASE2:Hg19::chr2:25720352..25720388,-#_6d6c0bf7116e5b3bdcb6f54024aa941fp7@DTNB
7.63e-73FFCP PHASE2:Hg19::chr1:62417735..62417748,+#_7e0fc2ac46acff2863e01f2281c3117dp9@INADL
7.63e-73FFCP PHASE1:Hg19::chr1:62417735..62417748,+#_7e0fc2ac46acff2863e01f2281c3117dp9@INADL
4.62e-72FFCP PHASE1:Hg19::chr6:138959885..138959912,-#_98ecb79c09860e754245bcdfb20ca9e4p@chr6:138959885..138959912, -
4.62e-72FFCP PHASE2:Hg19::chr6:138959885..138959912,-#_98ecb79c09860e754245bcdfb20ca9e4p@chr6:138959885..138959912, -
8.09e-70FFCP PHASE1:Hg19::chr16:290098..290109,+#_d44bdb9c8df69edb2b92cbc3e8018370p13@ITFG3
8.09e-70FFCP PHASE1:Hg19::chrX:106692569..106692585,+#_d44bdb9c8df69edb2b92cbc3e8018370p@chrX:106692569..106692585, +
8.09e-70FFCP PHASE2:Hg19::chr16:290098..290109,+#_d44bdb9c8df69edb2b92cbc3e8018370p13@ITFG3
8.09e-70FFCP PHASE2:Hg19::chrX:106692569..106692585,+#_d44bdb9c8df69edb2b92cbc3e8018370p@chrX:106692569..106692585, +
4.02e-69FFCP PHASE1:Hg19::chr12:41136144..41136158,+#_2312beaf9d3a9d39487fb993bcf5227bp14@CNTN1
4.02e-69FFCP PHASE2:Hg19::chr12:41136144..41136158,+#_2312beaf9d3a9d39487fb993bcf5227bp14@CNTN1
1.26e-67FFCP PHASE2:Hg19::chr5:151304987..151304998,-#_ea0844a663489faa6ac38c22177df64cp@chr5:151304987..151304998, -
1.26e-67FFCP PHASE1:Hg19::chr5:151304987..151304998,-#_ea0844a663489faa6ac38c22177df64cp@chr5:151304987..151304998, -
1.41e-67FFCP PHASE2:Hg19::chr11:122733138..122733178,+#_1bed52849e7d74f4341e3ca939399598p3@CRTAM
1.41e-67FFCP PHASE2:Hg19::chr17:42993851..42993858,-#_1bed52849e7d74f4341e3ca939399598p@chr17:42993851..42993858, -
1.41e-67FFCP PHASE1:Hg19::chr17:42993851..42993858,-#_1bed52849e7d74f4341e3ca939399598p@chr17:42993851..42993858, -
1.41e-67FFCP PHASE1:Hg19::chr11:122733138..122733178,+#_1bed52849e7d74f4341e3ca939399598p3@CRTAM
1.58e-67FFCP PHASE1:Hg19::chr9:135457981..135458003,+#_5cc356945565bb4ca8571f2d8288e2ecp1@BARHL1
1.58e-67FFCP PHASE2:Hg19::chr9:135457981..135458003,+#_5cc356945565bb4ca8571f2d8288e2ecp1@BARHL1
1.99e-67FFCP PHASE1:Hg19::chr4:117675601..117675614,+#_c824f89275be9db0a21387178d0f3b8cp@chr4:117675601..117675614, +
1.99e-67FFCP PHASE2:Hg19::chr4:117675601..117675614,+#_c824f89275be9db0a21387178d0f3b8cp@chr4:117675601..117675614, +
1.58e-66FFCP PHASE2:Hg19::chr6:132937878..132937891,-#_e4f0001b705f0be07d91a787a5412fc2p@chr6:132937878..132937891, -
1.58e-66FFCP PHASE1:Hg19::chr6:132937878..132937891,-#_e4f0001b705f0be07d91a787a5412fc2p@chr6:132937878..132937891, -
4.89e-66FFCP PHASE2:Hg19::chr10:130489635..130489656,-#_d4b2124df94313484a6a16ab0726acfdp@chr10:130489635..130489656, -
4.89e-66FFCP PHASE1:Hg19::chr10:130489635..130489656,-#_d4b2124df94313484a6a16ab0726acfdp@chr10:130489635..130489656, -
7.04e-66FFCP PHASE1:Hg19::chr6:152884391..152884402,-#_d4c0752ef6502dc269d1e7fec3d548dep@chr6:152884391..152884402, -
7.04e-66FFCP PHASE2:Hg19::chr6:152884391..152884402,-#_d4c0752ef6502dc269d1e7fec3d548dep@chr6:152884391..152884402, -
7.04e-66FFCP PHASE1:Hg19::chr11:31788840..31788847,-#_d4c0752ef6502dc269d1e7fec3d548dep@chr11:31788840..31788847, -
7.04e-66FFCP PHASE2:Hg19::chr4:117873850..117873861,-#_d4c0752ef6502dc269d1e7fec3d548dep@chr4:117873850..117873861, -
7.04e-66FFCP PHASE1:Hg19::chr4:117873850..117873861,-#_d4c0752ef6502dc269d1e7fec3d548dep@chr4:117873850..117873861, -
7.04e-66FFCP PHASE2:Hg19::chr11:114146042..114146050,-#_d4c0752ef6502dc269d1e7fec3d548dep@chr11:114146042..114146050, -
7.04e-66FFCP PHASE1:Hg19::chr11:114146042..114146050,-#_d4c0752ef6502dc269d1e7fec3d548dep@chr11:114146042..114146050, -
7.04e-66FFCP PHASE2:Hg19::chr11:31788840..31788847,-#_d4c0752ef6502dc269d1e7fec3d548dep@chr11:31788840..31788847, -
2.03e-65FFCP PHASE1:Hg19::chr11:17172327..17172344,-#_91ab23cde3ceb515b526a3aea6dde932p@chr11:17172327..17172344, -
2.03e-65FFCP PHASE2:Hg19::chr11:17172327..17172344,-#_91ab23cde3ceb515b526a3aea6dde932p@chr11:17172327..17172344, -
2.32e-65FFCP PHASE2:Hg19::chr17:26902537..26902548,-#_b8a883eb302e88476c79e5a8b42a6d5dp3@ALDOC
2.32e-65FFCP PHASE1:Hg19::chr17:26902537..26902548,-#_b8a883eb302e88476c79e5a8b42a6d5dp3@ALDOC
3.04e-65FFCP PHASE1:Hg19::chr16:290135..290154,+#_bd445acec3454d6a483735ac6ee18a63p10@ITFG3
3.04e-65FFCP PHASE2:Hg19::chr16:290135..290154,+#_bd445acec3454d6a483735ac6ee18a63p10@ITFG3
3.8e-64FFCP PHASE2:Hg19::chr18:77014816..77014819,-#_f79aff5977fef861f42558e5118149e7p@chr18:77014816..77014819, -
3.8e-64FFCP PHASE1:Hg19::chr18:77014816..77014819,-#_f79aff5977fef861f42558e5118149e7p@chr18:77014816..77014819, -
4.17e-64FFCP PHASE1:Hg19::chr14:62010202..62010207,-#_3eb2a9dd74b4b35bfaff2d6d80a0a156p@chr14:62010202..62010207, -
4.17e-64FFCP PHASE2:Hg19::chr14:62010202..62010207,-#_3eb2a9dd74b4b35bfaff2d6d80a0a156p@chr14:62010202..62010207, -
4.32e-64FFCP PHASE2:Hg19::chr5:136070614..136070625,+#_6866b05e9da74deaf1ffb0e5dc736a1fp1@ENST00000502421
4.32e-64FFCP PHASE1:Hg19::chr5:136070614..136070625,+#_6866b05e9da74deaf1ffb0e5dc736a1fp1@ENST00000502421
5.53e-64FFCP PHASE2:Hg19::chr2:179739649..179739660,-#_53a62636f3fe1fbda15df9c2633efe83p@chr2:179739649..179739660, -
5.53e-64FFCP PHASE1:Hg19::chr1:62417689..62417701,+#_53a62636f3fe1fbda15df9c2633efe83p10@INADL
5.53e-64FFCP PHASE1:Hg19::chr2:179739649..179739660,-#_53a62636f3fe1fbda15df9c2633efe83p@chr2:179739649..179739660, -
5.53e-64FFCP PHASE2:Hg19::chr1:62417689..62417701,+#_53a62636f3fe1fbda15df9c2633efe83p10@INADL
7.09e-64FFCP PHASE2:Hg19::chr15:79356984..79356998,-#_16eb6ee85b0c07ab7aa72fd8032c372dp8@RASGRF1
7.09e-64FFCP PHASE1:Hg19::chr15:79356984..79356998,-#_16eb6ee85b0c07ab7aa72fd8032c372dp8@RASGRF1
6.57e-63FFCP PHASE1:Hg19::chr2:25720404..25720435,-#_653363687ea066244a7d35aa1cc0e87fp8@DTNB
6.57e-63FFCP PHASE2:Hg19::chr2:25720404..25720435,-#_653363687ea066244a7d35aa1cc0e87fp8@DTNB
4.25e-62FFCP PHASE2:Hg19::chr5:72570629..72570651,-#_6d1ef3b15020b7822bf0c95d98667b29p@chr5:72570629..72570651, -
4.25e-62FFCP PHASE1:Hg19::chr5:72570629..72570651,-#_6d1ef3b15020b7822bf0c95d98667b29p@chr5:72570629..72570651, -
9.47e-62FFCP PHASE1:Hg19::chr17:68101098..68101109,+#_77564d21b5966a31a6738b492941e850p6@KCNJ16
9.47e-62FFCP PHASE2:Hg19::chr17:68101098..68101109,+#_77564d21b5966a31a6738b492941e850p6@KCNJ16
9.66e-62FFCP PHASE1:Hg19::chr5:20575812..20575831,-#_872474e13bb963589a8f8b8e12d124f0p4@CDH18
9.66e-62FFCP PHASE2:Hg19::chr5:20575812..20575831,-#_872474e13bb963589a8f8b8e12d124f0p4@CDH18
1.29e-60FFCP PHASE1:Mm9::chr7:57167425..57167443,+#_32cd34303bb738a6eaf2cb10cb93f08bp@chr7:57167425..57167443, +
1.29e-60FFCP PHASE2:Mm9::chr7:57167425..57167443,+#_32cd34303bb738a6eaf2cb10cb93f08bp@chr7:57167425..57167443, +
7.99e-60FFCP PHASE2:Hg19::chr1:90885681..90885693,-#_d65aa569cdd0ee4054f8edcc13aa4afep@chr1:90885681..90885693, -
7.99e-60FFCP PHASE1:Hg19::chr1:90885681..90885693,-#_d65aa569cdd0ee4054f8edcc13aa4afep@chr1:90885681..90885693, -
9.54e-60FFCP PHASE1:Hg19::chr12:26765770..26765792,-#_366a6b9a538bc521de3d22a7ef6d06dbp@chr12:26765770..26765792, -
9.54e-60FFCP PHASE2:Hg19::chr6:158438086..158438095,+#_366a6b9a538bc521de3d22a7ef6d06dbp8@SYNJ2
9.54e-60FFCP PHASE2:Hg19::chr12:26765770..26765792,-#_366a6b9a538bc521de3d22a7ef6d06dbp@chr12:26765770..26765792, -
9.54e-60FFCP PHASE1:Hg19::chr6:158438086..158438095,+#_366a6b9a538bc521de3d22a7ef6d06dbp8@SYNJ2
1.03e-59FFCP PHASE1:Hg19::chr17:43035276..43035287,+#_6f8ca14b0cb56ece3331bfdedc1f9f04p@chr17:43035276..43035287, +
1.03e-59FFCP PHASE2:Hg19::chr17:43035276..43035287,+#_6f8ca14b0cb56ece3331bfdedc1f9f04p@chr17:43035276..43035287, +

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