Personal tools

UBERON:0002185: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002185
|alt_id=UBERON:FMA_7409-MA_0000436-MIAA_0000133-XAO_0000121
|name=bronchus
|anatomical_img_id=FMA:7409
|namespace=
|def="A portion of the airway that connects to the lungs[GO]." [Wikipedia:Bronchus]
|xref=BTO:0001340;;EFO:0000932;;EV:0100041;;FMA:7409;;GAID:346;;http://upload.wikimedia.org/wikipedia/commons/1/18/Respiratory_system_complete_numbered.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/1/18/Respiratory_system_complete_numbered.svg/200px-Respiratory_system_complete_numbered.svg.png;;MA:0000436;;MAT:0000133;;MESH:A.04.411.125;;MIAA:0000133;;ncithesaurus:Bronchus;;SCTID:181215002;;VHOG:0000262;;XAO:0000121
|is_a=UBERON:0004119;;UBERON:0005178
|synonym="bronchi" EXACT PLURAL [];;"bronchial tissue" RELATED [BTO:0001340];;"bronchial trunk" EXACT []
|comment=
|comment=
|alt_id=UBERON:FMA_7409-MA_0000436-MIAA_0000133-XAO_0000121
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A portion of the airway that connects to the lungs[GO]." [Wikipedia:Bronchus]
|subset=organ_slim;;uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002185
|is_a=UBERON:0000117
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=bronchus
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0007196
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=organ_slim;;uberon_slim
|preceded_by=
|synonym="bronchi" EXACT PLURAL [];;"bronchial tissue" RELATED [BTO:0001340];;"bronchial trunk" EXACT []
|union_of=
|xref=BTO:0001340;;EFO:0000932;;EV:0100041;;FMA:7409;;GAID:346;;http://upload.wikimedia.org/wikipedia/commons/1/18/Respiratory_system_complete_numbered.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/1/18/Respiratory_system_complete_numbered.svg/200px-Respiratory_system_complete_numbered.svg.png;;MA:0000436;;MAT:0000133;;MESH:A.04.411.125;;MIAA:0000133;;ncithesaurus:Bronchus;;SCTID:181215002;;VHOG:0000262;;XAO:0000121
}}
}}

Latest revision as of 17:27, 12 September 2014

Name:bronchus
Namespace:FANTOM
Definition:"A portion of the airway that connects to the lungs[GO]." [Wikipedia:Bronchus]
Xrefs:
links:

BTO:0001340
EFO:0000932
EV:0100041
FMA:7409
GAID:346
[1]
[ 200px-Respiratory_system_complete_numbered.svg.png 200px-Respiratory_system_complete_numbered.svg.png]
MA:0000436
MAT:0000133
MESH:A.04.411.125
MIAA:0000133
ncithesaurus:Bronchus
SCTID:181215002
VHOG:0000262

XAO:0000121
Synonyms: "bronchi" EXACT PLURAL []
"bronchial tissue" RELATED [BTO:0001340]
"bronchial trunk" EXACT []
Alt_id: UBERON:FMA_7409-MA_0000436-MIAA_0000133-XAO_0000121
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000117(respiratory tube)
part_of:UBERON:0007196(tracheobronchial tree)



Children

part of:UBERON:0002031 (epithelium of bronchus),CL:0002328 (bronchial epithelial cell),CL:0002598 (bronchial smooth muscle cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002185 (bronchus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.85e-51FFCP PHASE1:Hg19::chr3:189632708..189632721,-#_010fed21d963f35116552b203c50ecc2p@chr3:189632708..189632721, -
3.85e-51FFCP PHASE2:Hg19::chr3:189632708..189632721,-#_010fed21d963f35116552b203c50ecc2p@chr3:189632708..189632721, -
2.22e-40FFCP PHASE2:Hg19::chr1:209823455..209823467,-#_eb2b6453e0da5273c4405d6bd1db29d8p@chr1:209823455..209823467, -
2.22e-40FFCP PHASE1:Hg19::chr1:209823455..209823467,-#_eb2b6453e0da5273c4405d6bd1db29d8p@chr1:209823455..209823467, -
1.73e-30FFCP PHASE1:Hg19::chr1:95088552..95088567,+#_28d0572eb62da5d5e7bc1565f2ca559ep@chr1:95088552..95088567, +
1.73e-30FFCP PHASE2:Hg19::chr1:95088552..95088567,+#_28d0572eb62da5d5e7bc1565f2ca559ep@chr1:95088552..95088567, +
2.3e-28FFCP PHASE2:Hg19::chr1:3591362..3591369,-#_3a53adec326121572a36d8d61d0c8170p@chr1:3591362..3591369, -
2.3e-28FFCP PHASE1:Hg19::chr1:3591362..3591369,-#_3a53adec326121572a36d8d61d0c8170p@chr1:3591362..3591369, -
1.59e-27FFCP PHASE1:Hg19::chr2:113830230..113830233,-#_5f35f1a7f13d5f75a7b12444d2644e00p@chr2:113830230..113830233, -
1.59e-27FFCP PHASE2:Hg19::chr2:113830230..113830233,-#_5f35f1a7f13d5f75a7b12444d2644e00p@chr2:113830230..113830233, -
2.16e-26FFCP PHASE2:Hg19::chr10:73679250..73679255,-#_8f9dbbdd575fe7793ca4444ee667dd0ep@chr10:73679250..73679255, -
2.16e-26FFCP PHASE1:Hg19::chr10:73679250..73679255,-#_8f9dbbdd575fe7793ca4444ee667dd0ep@chr10:73679250..73679255, -
8.01e-25FFCP PHASE1:Hg19::chr1:9953308..9953320,-#_2980e6d79f4d84ab0ff388fca109e6a7p9@CTNNBIP1
8.01e-25FFCP PHASE2:Hg19::chr1:9953308..9953320,-#_2980e6d79f4d84ab0ff388fca109e6a7p9@CTNNBIP1
1.28e-23FFCP PHASE1:Hg19::chr17:48611912..48611919,+#_0e8ef6671c7fdb81f9a3c22bad558cebp7@EPN3
1.28e-23FFCP PHASE2:Hg19::chr17:48611912..48611919,+#_0e8ef6671c7fdb81f9a3c22bad558cebp7@EPN3
1.44e-23FFCP PHASE2:Hg19::chr7:135018332..135018336,+#_3d3cabf95a87cfd89127531ea2e9544dp@chr7:135018332..135018336, +
1.44e-23FFCP PHASE1:Hg19::chr7:135018332..135018336,+#_3d3cabf95a87cfd89127531ea2e9544dp@chr7:135018332..135018336, +
2.05e-23FFCP PHASE1:Hg19::chr1:95089255..95089279,-#_63dc579d69d82d8dae603bd58d77c539p1@ENST00000435559
2.05e-23FFCP PHASE2:Hg19::chr1:95089255..95089279,-#_63dc579d69d82d8dae603bd58d77c539p1@ENST00000435559
2.99e-23FFCP PHASE1:Hg19::chr17:48611940..48611947,+#_7c9910accc87773cf46cd8f97c93e20fp5@EPN3
2.99e-23FFCP PHASE2:Hg19::chr17:48611940..48611947,+#_7c9910accc87773cf46cd8f97c93e20fp5@EPN3
4.36e-23FFCP PHASE1:Hg19::chr2:74211227..74211238,+#_c2eb6186299a74fdaf0ea9d26f70b258p@chr2:74211227..74211238, +
4.36e-23FFCP PHASE2:Hg19::chr2:74211227..74211238,+#_c2eb6186299a74fdaf0ea9d26f70b258p@chr2:74211227..74211238, +
4.12e-22FFCP PHASE2:Hg19::chr17:38179639..38179652,-#_3d970896ce57aa126cc0980eef1e5817p7@MED24
4.12e-22FFCP PHASE1:Hg19::chr17:38179639..38179652,-#_3d970896ce57aa126cc0980eef1e5817p7@MED24
1.7e-21FFCP PHASE1:Hg19::chr20:14248741..14248745,-#_b5c25d53ccf740408acb383b9bb0582bp@chr20:14248741..14248745, -
1.7e-21FFCP PHASE2:Hg19::chr20:14248741..14248745,-#_b5c25d53ccf740408acb383b9bb0582bp@chr20:14248741..14248745, -
5.15e-21FFCP PHASE2:Hg19::chr1:27181551..27181558,-#_99fc3527a5098794d781574bd0051b74p@chr1:27181551..27181558, -
5.15e-21FFCP PHASE1:Hg19::chr1:27181551..27181558,-#_99fc3527a5098794d781574bd0051b74p@chr1:27181551..27181558, -
5.96e-21FFCP PHASE2:Hg19::chr17:38652393..38652403,-#_586831d63c59b96742f5040c09a012e9p16@TNS4
5.96e-21FFCP PHASE1:Hg19::chr17:38652393..38652403,-#_586831d63c59b96742f5040c09a012e9p16@TNS4
7.3e-21FFCP PHASE1:Hg19::chr1:153540420..153540455,+#_becab612231c98dbcf2a261a1e8f3b26p@chr1:153540420..153540455, +
7.3e-21FFCP PHASE2:Hg19::chr1:153540420..153540455,+#_becab612231c98dbcf2a261a1e8f3b26p@chr1:153540420..153540455, +
7.35e-21FFCP PHASE2:Hg19::chr11:94427497..94427507,-#_7b9c3521cad9f72173e6179419741b67p@chr11:94427497..94427507, -
7.35e-21FFCP PHASE1:Hg19::chr11:94427497..94427507,-#_7b9c3521cad9f72173e6179419741b67p@chr11:94427497..94427507, -
7.81e-21FFCP PHASE1:Hg19::chr12:52844247..52844256,-#_b251000296534795735beb3e73486692p@chr12:52844247..52844256, -
7.81e-21FFCP PHASE2:Hg19::chr12:52844247..52844256,-#_b251000296534795735beb3e73486692p@chr12:52844247..52844256, -
1.21e-20FFCP PHASE1:Hg19::chr3:190252374..190252383,-#_63511c474e3c6867fcfb140a91758e0dp@chr3:190252374..190252383, -
1.21e-20FFCP PHASE2:Hg19::chr3:190252374..190252383,-#_63511c474e3c6867fcfb140a91758e0dp@chr3:190252374..190252383, -
1.25e-20FFCP PHASE1:Hg19::chr1:183133608..183133625,-#_a2253880048f69332286fa21ca45076fp@chr1:183133608..183133625, -
1.25e-20FFCP PHASE2:Hg19::chr1:183133608..183133625,-#_a2253880048f69332286fa21ca45076fp@chr1:183133608..183133625, -
1.34e-20FFCP PHASE1:Hg19::chr8:29414184..29414190,+#_86667dc4d6f568384f3bc7ab3e5adcd1p@chr8:29414184..29414190, +
1.34e-20FFCP PHASE2:Hg19::chr8:29414184..29414190,+#_86667dc4d6f568384f3bc7ab3e5adcd1p@chr8:29414184..29414190, +
5.05e-20FFCP PHASE2:Hg19::chr14:67879076..67879080,+#_0bac83ac992bd52c4d719488a310f9f6p@chr14:67879076..67879080, +
5.05e-20FFCP PHASE1:Hg19::chr14:67879076..67879080,+#_0bac83ac992bd52c4d719488a310f9f6p@chr14:67879076..67879080, +
6.95e-20FFCP PHASE2:Hg19::chr1:209807970..209807983,-#_f5627b8ca9073f1b7c5ab33ca04da9bfp@chr1:209807970..209807983, -
6.95e-20FFCP PHASE1:Hg19::chr1:209807970..209807983,-#_f5627b8ca9073f1b7c5ab33ca04da9bfp@chr1:209807970..209807983, -
1.16e-19FFCP PHASE2:Hg19::chr6:83075367..83075383,-#_2f6aa9aade7107befb7b8a15dfa60890p@chr6:83075367..83075383, -
1.16e-19FFCP PHASE1:Hg19::chr6:83075367..83075383,-#_2f6aa9aade7107befb7b8a15dfa60890p@chr6:83075367..83075383, -
4.98e-19FFCP PHASE1:Hg19::chr4:15937715..15937733,-#_d3e1f506a33cf77bca804d6f1d4da6f1p@chr4:15937715..15937733, -
4.98e-19FFCP PHASE2:Hg19::chr4:15937715..15937733,-#_d3e1f506a33cf77bca804d6f1d4da6f1p@chr4:15937715..15937733, -
7.24e-19FFCP PHASE2:Hg19::chr13:61507880..61507904,-#_695b69d9d6c20920cdc7a43da3cea27dp@chr13:61507880..61507904, -
7.24e-19FFCP PHASE1:Hg19::chr13:61507880..61507904,-#_695b69d9d6c20920cdc7a43da3cea27dp@chr13:61507880..61507904, -
8.08e-19FFCP PHASE1:Hg19::chr9:26747081..26747110,+#_35aa5c92f32417e249a439bcb9dc77a6p@chr9:26747081..26747110, +
8.08e-19FFCP PHASE2:Hg19::chr9:26747081..26747110,+#_35aa5c92f32417e249a439bcb9dc77a6p@chr9:26747081..26747110, +
8.66e-19FFCP PHASE1:Hg19::chr1:152475755..152475761,+#_82f58f858a38979358d56e4284530e67p@chr1:152475755..152475761, +
8.66e-19FFCP PHASE2:Hg19::chr1:152475755..152475761,+#_82f58f858a38979358d56e4284530e67p@chr1:152475755..152475761, +
9.47e-19FFCP PHASE1:Hg19::chr4:82554167..82554171,+#_889e4254c8f51596690cefbaf4d6a79cp@chr4:82554167..82554171, +
9.47e-19FFCP PHASE2:Hg19::chr4:82554167..82554171,+#_889e4254c8f51596690cefbaf4d6a79cp@chr4:82554167..82554171, +
1.03e-18FFCP PHASE2:Hg19::chr11:120008883..120008884,-#_ed15f78ecf18b6303a68cbe2b06683a9p16@TRIM29
1.03e-18FFCP PHASE1:Hg19::chr11:120008883..120008884,-#_ed15f78ecf18b6303a68cbe2b06683a9p16@TRIM29
1.35e-18FFCP PHASE2:Hg19::chr15:76443020..76443024,-#_a224c53ce173a9812d96a88dc7405be1p@chr15:76443020..76443024, -
1.35e-18FFCP PHASE1:Hg19::chr15:76443020..76443024,-#_a224c53ce173a9812d96a88dc7405be1p@chr15:76443020..76443024, -
1.39e-18FFCP PHASE2:Hg19::chr17:39777017..39777027,+#_1b43eabfa4c4e204e4b31e52feab4f27p@chr17:39777017..39777027, +
1.39e-18FFCP PHASE1:Hg19::chr17:39777017..39777027,+#_1b43eabfa4c4e204e4b31e52feab4f27p@chr17:39777017..39777027, +
1.66e-18FFCP PHASE2:Hg19::chr1:209825932..209825936,-#_2c46fc2f3238bc5b0ca8202f723e8edbp10@LAMB3
1.66e-18FFCP PHASE1:Hg19::chr1:209825932..209825936,-#_2c46fc2f3238bc5b0ca8202f723e8edbp10@LAMB3
1.93e-18FFCP PHASE1:Hg19::chr1:156720278..156720286,+#_65b8d98cd57e38daa31edce0426bb862p15@PRCC
1.93e-18FFCP PHASE2:Hg19::chr1:156720278..156720286,+#_65b8d98cd57e38daa31edce0426bb862p15@PRCC
2.08e-18FFCP PHASE1:Hg19::chr17:39780624..39780631,-#_fdb325240978b7b4da3556c7c50570d1p8@KRT17
2.08e-18FFCP PHASE2:Hg19::chr17:39780624..39780631,-#_fdb325240978b7b4da3556c7c50570d1p8@KRT17
2.52e-18FFCP PHASE1:Hg19::chr14:94426721..94426726,+#_1470882ef486674a49c7d024685e666cp@chr14:94426721..94426726, +
2.52e-18FFCP PHASE2:Hg19::chr14:94426721..94426726,+#_1470882ef486674a49c7d024685e666cp@chr14:94426721..94426726, +
4.98e-18FFCP PHASE2:Hg19::chr12:52913881..52913889,+#_0e02f437e525e5cfe94d875aa56ed44dp@chr12:52913881..52913889, +
4.98e-18FFCP PHASE1:Hg19::chr12:52913881..52913889,+#_0e02f437e525e5cfe94d875aa56ed44dp@chr12:52913881..52913889, +
5.58e-18FFCP PHASE1:Hg19::chr17:73719483..73719489,-#_d84224703a2ec63dba55721014d9ef59p@chr17:73719483..73719489, -
5.58e-18FFCP PHASE2:Hg19::chr17:73719483..73719489,-#_d84224703a2ec63dba55721014d9ef59p@chr17:73719483..73719489, -
6.26e-18FFCP PHASE2:Hg19::chr1:209827520..209827532,-#_3389c006df711dc0520eff0d4c1e4b02p@chr1:209827520..209827532, -
6.26e-18FFCP PHASE1:Hg19::chr1:209827520..209827532,-#_3389c006df711dc0520eff0d4c1e4b02p@chr1:209827520..209827532, -
7.44e-18FFCP PHASE2:Hg19::chr12:56332022..56332030,+#_22ff722a9a088c36847deefc8bb05f40p17@DGKA
7.44e-18FFCP PHASE1:Hg19::chr12:56332022..56332030,+#_22ff722a9a088c36847deefc8bb05f40p17@DGKA
3.42e-17FFCP PHASE2:Hg19::chr17:38657781..38657786,-#_14004bf113d1e37d31995d7e97593cbap15@TNS4
3.42e-17FFCP PHASE1:Hg19::chr17:38657781..38657786,-#_14004bf113d1e37d31995d7e97593cbap15@TNS4
4.04e-17FFCP PHASE2:Hg19::chr1:55436540..55436544,-#_e064e8c2dc574bffd028badd81004535p@chr1:55436540..55436544, -
4.04e-17FFCP PHASE1:Hg19::chr1:55436540..55436544,-#_e064e8c2dc574bffd028badd81004535p@chr1:55436540..55436544, -
5.02e-17FFCP PHASE1:Hg19::chr1:153534013..153534025,+#_0952ff6c56d98865befd63029077719fp@chr1:153534013..153534025, +
5.02e-17FFCP PHASE2:Hg19::chr1:153534013..153534025,+#_0952ff6c56d98865befd63029077719fp@chr1:153534013..153534025, +
5.03e-17FFCP PHASE1:Hg19::chr2:70581573..70581577,-#_8dfceb8e41817f7f460ea727e0d10213p@chr2:70581573..70581577, -
5.03e-17FFCP PHASE1:Hg19::chr19:48101913..48101916,-#_8dfceb8e41817f7f460ea727e0d10213p@chr19:48101913..48101916, -
5.03e-17FFCP PHASE2:Hg19::chr2:70581573..70581577,-#_8dfceb8e41817f7f460ea727e0d10213p@chr2:70581573..70581577, -
5.03e-17FFCP PHASE2:Hg19::chr19:48101913..48101916,-#_8dfceb8e41817f7f460ea727e0d10213p@chr19:48101913..48101916, -
5.03e-17FFCP PHASE2:Hg19::chr1:44446555..44446566,+#_8dfceb8e41817f7f460ea727e0d10213p16@B4GALT2
5.03e-17FFCP PHASE1:Hg19::chr1:44446555..44446566,+#_8dfceb8e41817f7f460ea727e0d10213p16@B4GALT2
5.45e-17FFCP PHASE2:Hg19::chr1:46647115..46647118,-#_195ac632dcd9764b649bf551f12df54ep@chr1:46647115..46647118, -
5.45e-17FFCP PHASE1:Hg19::chr1:46647115..46647118,-#_195ac632dcd9764b649bf551f12df54ep@chr1:46647115..46647118, -
5.45e-17FFCP PHASE1:Hg19::chr2:20402306..20402318,-#_195ac632dcd9764b649bf551f12df54ep@chr2:20402306..20402318, -
5.45e-17FFCP PHASE2:Hg19::chr2:20402306..20402318,-#_195ac632dcd9764b649bf551f12df54ep@chr2:20402306..20402318, -
5.92e-17FFCP PHASE2:Hg19::chr17:39768786..39768828,-#_9fdc3e5b1fd8047750c578944a6b3bfcp2@KRT16
5.92e-17FFCP PHASE1:Hg19::chr17:39768786..39768828,-#_9fdc3e5b1fd8047750c578944a6b3bfcp2@KRT16

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002185&oldid=3277394"