UBERON:0001557: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_45661-MA_0000442 | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|created_by= | |created_by= | ||
| | |def="Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA]" [FMA:FMA, Wikipedia:Upper_respiratory_tract] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001557 | |||
|is_a=UBERON:0000072 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=upper respiratory tract | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=uberon_slim | ||
| | |synonym= | ||
|union_of= | |||
|xref=EHDAA2:0002136;;EMAPA:17669;;FMA:45661;;http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg;;MA:0000442;;OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ;;SCTID:361381009;;VHOG:0000406 | |||
}} | }} | ||
Latest revision as of 17:19, 12 September 2014
| Name: | upper respiratory tract | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA]" [FMA:FMA, Wikipedia:Upper_respiratory_tract] | ||
| Xrefs: |
| ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_45661-MA_0000442 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000072(segment of respiratory tract) |
|---|
Children
| part of: | UBERON:0001707 (nasal cavity),UBERON:0004814 (upper respiratory tract epithelium),UBERON:0009145 (pharyngeal region of foregut),UBERON:0015787 (upper respiratory conduit) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10275-104E5
- 10303-104H6
- 10331-105B7
- 11890-125D9 (Hep-2 cells treated with Streptococci strain 5448, biol_rep1)
- 11891-125E1 (Hep-2 cells treated with Streptococci strain 5448, biol_rep2)
- 11892-125E2 (Hep-2 cells treated with Streptococci strain 5448, biol_rep3)
- 11893-125E3
- 11894-125E4 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep1)
- 11895-125E5 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep2)
- 11896-125E6 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001557 (upper respiratory tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.04e-92 | FFCP PHASE1:Hg19::chr2:233246793..233246841,-#_893f41b6bd87a40fefcacac4cbe37154 | p1@ENST00000441266 |
| 1.04e-92 | FFCP PHASE2:Hg19::chr17:79098633..79098647,-#_893f41b6bd87a40fefcacac4cbe37154 | p@chr17:79098633..79098647, - |
| 1.04e-92 | FFCP PHASE2:Hg19::chr2:233246459..233246472,+#_893f41b6bd87a40fefcacac4cbe37154 | p9@ALPP |
| 1.04e-92 | FFCP PHASE1:Hg19::chr2:233246459..233246472,+#_893f41b6bd87a40fefcacac4cbe37154 | p9@ALPP |
| 1.04e-92 | FFCP PHASE1:Hg19::chr2:233246932..233246943,+#_893f41b6bd87a40fefcacac4cbe37154 | p6@ALPP |
| 1.04e-92 | FFCP PHASE2:Hg19::chr2:233244473..233244503,+#_893f41b6bd87a40fefcacac4cbe37154 | p1@AK297894 |
| 1.04e-92 | FFCP PHASE1:Hg19::chr17:79098633..79098647,-#_893f41b6bd87a40fefcacac4cbe37154 | p@chr17:79098633..79098647, - |
| 1.04e-92 | FFCP PHASE2:Hg19::chr2:233244912..233244922,+#_893f41b6bd87a40fefcacac4cbe37154 | p2@AK297894 |
| 1.04e-92 | FFCP PHASE2:Hg19::chr16:87869864..87869878,+#_893f41b6bd87a40fefcacac4cbe37154 | p@chr16:87869864..87869878, + |
| 1.04e-92 | FFCP PHASE1:Hg19::chr8:128241234..128241241,-#_893f41b6bd87a40fefcacac4cbe37154 | p7@uc003ysb.2 |
| 1.04e-92 | FFCP PHASE1:Hg19::chr16:87869864..87869878,+#_893f41b6bd87a40fefcacac4cbe37154 | p@chr16:87869864..87869878, + |
| 1.04e-92 | FFCP PHASE2:Hg19::chr2:53732986..53732989,-#_893f41b6bd87a40fefcacac4cbe37154 | p@chr2:53732986..53732989, - |
| 1.04e-92 | FFCP PHASE2:Hg19::chr2:233246932..233246943,+#_893f41b6bd87a40fefcacac4cbe37154 | p6@ALPP |
| 1.04e-92 | FFCP PHASE1:Hg19::chr2:233244912..233244922,+#_893f41b6bd87a40fefcacac4cbe37154 | p2@AK297894 |
| 1.04e-92 | FFCP PHASE1:Hg19::chr2:53732986..53732989,-#_893f41b6bd87a40fefcacac4cbe37154 | p@chr2:53732986..53732989, - |
| 1.04e-92 | FFCP PHASE2:Hg19::chr8:128241234..128241241,-#_893f41b6bd87a40fefcacac4cbe37154 | p7@uc003ysb.2 |
| 1.04e-92 | FFCP PHASE2:Hg19::chr2:233246793..233246841,-#_893f41b6bd87a40fefcacac4cbe37154 | p1@ENST00000441266 |
| 1.04e-92 | FFCP PHASE1:Hg19::chr2:233244473..233244503,+#_893f41b6bd87a40fefcacac4cbe37154 | p1@AK297894 |
| 1.52e-83 | FFCP PHASE1:Hg19::chr4:134184041..134184064,-#_eef84bd4435712cbdd9b6c40866b2a9d | p2@ENST00000507172 |
| 1.52e-83 | FFCP PHASE2:Hg19::chrX:86868675..86868686,+#_eef84bd4435712cbdd9b6c40866b2a9d | p@chrX:86868675..86868686, + |
| 1.52e-83 | FFCP PHASE2:Hg19::chr4:123838984..123838995,-#_eef84bd4435712cbdd9b6c40866b2a9d | p@chr4:123838984..123838995, - |
| 1.52e-83 | FFCP PHASE2:Hg19::chr7:54879838..54879849,-#_eef84bd4435712cbdd9b6c40866b2a9d | p@chr7:54879838..54879849, - |
| 1.52e-83 | FFCP PHASE2:Hg19::chr8:128265552..128265583,-#_eef84bd4435712cbdd9b6c40866b2a9d | p@chr8:128265552..128265583, - |
| 1.52e-83 | FFCP PHASE1:Hg19::chr2:233246656..233246666,+#_eef84bd4435712cbdd9b6c40866b2a9d | p8@ALPP |
| 1.52e-83 | FFCP PHASE1:Hg19::chr8:128265552..128265583,-#_eef84bd4435712cbdd9b6c40866b2a9d | p@chr8:128265552..128265583, - |
| 1.52e-83 | FFCP PHASE2:Hg19::chr4:134184041..134184064,-#_eef84bd4435712cbdd9b6c40866b2a9d | p2@ENST00000507172 |
| 1.52e-83 | FFCP PHASE1:Hg19::chrX:86868675..86868686,+#_eef84bd4435712cbdd9b6c40866b2a9d | p@chrX:86868675..86868686, + |
| 1.52e-83 | FFCP PHASE1:Hg19::chr4:123838984..123838995,-#_eef84bd4435712cbdd9b6c40866b2a9d | p@chr4:123838984..123838995, - |
| 1.52e-83 | FFCP PHASE1:Hg19::chr7:54879838..54879849,-#_eef84bd4435712cbdd9b6c40866b2a9d | p@chr7:54879838..54879849, - |
| 1.52e-83 | FFCP PHASE2:Hg19::chr2:233246656..233246666,+#_eef84bd4435712cbdd9b6c40866b2a9d | p8@ALPP |
| 1.67e-83 | FFCP PHASE2:Hg19::chr2:233246988..233246995,+#_a6770af99d7933b119e7e30d7f6d0784 | p@chr2:233246988..233246995, + |
| 1.67e-83 | FFCP PHASE1:Hg19::chr2:233246988..233246995,+#_a6770af99d7933b119e7e30d7f6d0784 | p@chr2:233246988..233246995, + |
| 3.6e-83 | FFCP PHASE1:Hg19::chr8:128269736..128269748,-#_3295f5853cb0174a56656990cd46b8d8 | p@chr8:128269736..128269748, - |
| 3.6e-83 | FFCP PHASE1:Hg19::chr8:128270857..128270869,-#_3295f5853cb0174a56656990cd46b8d8 | p@chr8:128270857..128270869, - |
| 3.6e-83 | FFCP PHASE2:Hg19::chr8:128269736..128269748,-#_3295f5853cb0174a56656990cd46b8d8 | p@chr8:128269736..128269748, - |
| 3.6e-83 | FFCP PHASE2:Hg19::chr19:3603296..3603307,+#_3295f5853cb0174a56656990cd46b8d8 | p@chr19:3603296..3603307, + |
| 3.6e-83 | FFCP PHASE1:Hg19::chr19:3603296..3603307,+#_3295f5853cb0174a56656990cd46b8d8 | p@chr19:3603296..3603307, + |
| 3.6e-83 | FFCP PHASE2:Hg19::chr8:128270857..128270869,-#_3295f5853cb0174a56656990cd46b8d8 | p@chr8:128270857..128270869, - |
| 3.6e-83 | FFCP PHASE2:Hg19::chr8:128270240..128270252,-#_3295f5853cb0174a56656990cd46b8d8 | p@chr8:128270240..128270252, - |
| 3.6e-83 | FFCP PHASE1:Hg19::chr8:128270240..128270252,-#_3295f5853cb0174a56656990cd46b8d8 | p@chr8:128270240..128270252, - |
| 1.46e-82 | FFCP PHASE2:Hg19::chr4:134183951..134183960,-#_70da3fd13779de8a17384e21d395cdb6 | p4@ENST00000507172 |
| 1.46e-82 | FFCP PHASE1:Hg19::chr4:134183951..134183960,-#_70da3fd13779de8a17384e21d395cdb6 | p4@ENST00000507172 |
| 4.83e-76 | FFCP PHASE2:Hg19::chr2:233243233..233243245,+#_2b8d90cb40da8ac4458845024e076a11 | p5@ALPP |
| 4.83e-76 | FFCP PHASE1:Hg19::chr1:207262293..207262306,+#_2b8d90cb40da8ac4458845024e076a11 | p17@C4BPB |
| 4.83e-76 | FFCP PHASE2:Hg19::chr1:207262293..207262306,+#_2b8d90cb40da8ac4458845024e076a11 | p17@C4BPB |
| 4.83e-76 | FFCP PHASE1:Hg19::chr11:3147806..3147811,-#_2b8d90cb40da8ac4458845024e076a11 | p7@OSBPL5 |
| 4.83e-76 | FFCP PHASE2:Hg19::chr11:3147806..3147811,-#_2b8d90cb40da8ac4458845024e076a11 | p7@OSBPL5 |
| 4.83e-76 | FFCP PHASE1:Hg19::chr2:233243233..233243245,+#_2b8d90cb40da8ac4458845024e076a11 | p5@ALPP |
| 6.84e-76 | FFCP PHASE2:Hg19::chr11:4154830..4154835,+#_61e3fac8600fd66ccb1d8c1f59214e5b | p@chr11:4154830..4154835, + |
| 6.84e-76 | FFCP PHASE1:Hg19::chr11:4154830..4154835,+#_61e3fac8600fd66ccb1d8c1f59214e5b | p@chr11:4154830..4154835, + |
| 8.88e-76 | FFCP PHASE2:Hg19::chr8:128433201..128433228,-#_25d68900072ac2e09d5e7927c1ce0faa | p1@ENST00000501396, p1@ENST00000523825, p1@uc003ysc.1, p1@uc003ysd.1 |
| 8.88e-76 | FFCP PHASE1:Hg19::chr8:128433201..128433228,-#_25d68900072ac2e09d5e7927c1ce0faa | p1@ENST00000501396, p1@ENST00000523825, p1@uc003ysc.1, p1@uc003ysd.1 |
| 1.06e-75 | FFCP PHASE1:Hg19::chr8:128270900..128270912,-#_2cfe99c1be0bb3849b5ca4142430c6a8 | p@chr8:128270900..128270912, - |
| 1.06e-75 | FFCP PHASE2:Hg19::chr8:128270900..128270912,-#_2cfe99c1be0bb3849b5ca4142430c6a8 | p@chr8:128270900..128270912, - |
| 1.15e-75 | FFCP PHASE2:Hg19::chr4:173884019..173884038,+#_468fa143f4d0a3f5d92db2b2fcc960c9 | p@chr4:173884019..173884038, + |
| 1.15e-75 | FFCP PHASE1:Hg19::chr4:173884019..173884038,+#_468fa143f4d0a3f5d92db2b2fcc960c9 | p@chr4:173884019..173884038, + |
| 1.37e-75 | FFCP PHASE1:Hg19::chr4:173883984..173884005,+#_0f29d4b9dcae6c0c688c945c2bdfa47a | p@chr4:173883984..173884005, + |
| 1.37e-75 | FFCP PHASE2:Hg19::chr4:173883984..173884005,+#_0f29d4b9dcae6c0c688c945c2bdfa47a | p@chr4:173883984..173884005, + |
| 1.78e-75 | FFCP PHASE2:Hg19::chr2:10529417..10529422,+#_7d2b6f1aa743800268d505351d0a21a8 | p@chr2:10529417..10529422, + |
| 1.78e-75 | FFCP PHASE1:Hg19::chr2:10529417..10529422,+#_7d2b6f1aa743800268d505351d0a21a8 | p@chr2:10529417..10529422, + |
| 1.2e-73 | FFCP PHASE1:Hg19::chr8:128231737..128231742,-#_40e4882fb656d369fa9889508cba2ff8 | p14@ENST00000500112, p14@uc003ysa.1 |
| 1.2e-73 | FFCP PHASE2:Hg19::chr8:128231737..128231742,-#_40e4882fb656d369fa9889508cba2ff8 | p14@ENST00000500112, p14@uc003ysa.1 |
| 1.3e-73 | FFCP PHASE1:Hg19::chr8:143782507..143782516,+#_a370c0c92384919e08b14dcea8047f0d | p@chr8:143782507..143782516, + |
| 1.3e-73 | FFCP PHASE2:Hg19::chr8:143782507..143782516,+#_a370c0c92384919e08b14dcea8047f0d | p@chr8:143782507..143782516, + |
| 1.92e-73 | FFCP PHASE2:Hg19::chr2:233246589..233246598,+#_99f2861249279f1d39669f6e6c17a183 | p12@ALPP |
| 1.92e-73 | FFCP PHASE1:Hg19::chr2:233246589..233246598,+#_99f2861249279f1d39669f6e6c17a183 | p12@ALPP |
| 2.11e-73 | FFCP PHASE2:Hg19::chr16:87874486..87874492,-#_37cda8b4fe7664d98ca7de0941553096 | p@chr16:87874486..87874492, - |
| 2.11e-73 | FFCP PHASE1:Hg19::chr16:87874486..87874492,-#_37cda8b4fe7664d98ca7de0941553096 | p@chr16:87874486..87874492, - |
| 3.12e-73 | FFCP PHASE2:Hg19::chr2:234590530..234590553,+#_13313347acace1e384233347bc280d0b | p1@UGT1A7 |
| 3.12e-73 | FFCP PHASE1:Hg19::chr2:234590530..234590553,+#_13313347acace1e384233347bc280d0b | p1@UGT1A7 |
| 3.71e-73 | FFCP PHASE2:Hg19::chr5:370156..370169,+#_7c75b968a6f05c5df5577302c2e5feb1 | p@chr5:370156..370169, + |
| 3.71e-73 | FFCP PHASE1:Hg19::chr5:370156..370169,+#_7c75b968a6f05c5df5577302c2e5feb1 | p@chr5:370156..370169, + |
| 3.71e-73 | FFCP PHASE1:Hg19::chr8:128270948..128270958,-#_7c75b968a6f05c5df5577302c2e5feb1 | p@chr8:128270948..128270958, - |
| 3.71e-73 | FFCP PHASE2:Hg19::chr8:128270948..128270958,-#_7c75b968a6f05c5df5577302c2e5feb1 | p@chr8:128270948..128270958, - |
| 1.97e-72 | FFCP PHASE2:Hg19::chr16:87869840..87869849,+#_4f84c3b585076afcdde9cd639432af7a | p@chr16:87869840..87869849, + |
| 1.97e-72 | FFCP PHASE2:Hg19::chr9:84380797..84380800,+#_4f84c3b585076afcdde9cd639432af7a | p@chr9:84380797..84380800, + |
| 1.97e-72 | FFCP PHASE1:Hg19::chr2:233246442..233246451,+#_4f84c3b585076afcdde9cd639432af7a | p16@ALPP |
| 1.97e-72 | FFCP PHASE1:Hg19::chr16:87869840..87869849,+#_4f84c3b585076afcdde9cd639432af7a | p@chr16:87869840..87869849, + |
| 1.97e-72 | FFCP PHASE2:Hg19::chr2:233246442..233246451,+#_4f84c3b585076afcdde9cd639432af7a | p16@ALPP |
| 1.97e-72 | FFCP PHASE1:Hg19::chr9:84380797..84380800,+#_4f84c3b585076afcdde9cd639432af7a | p@chr9:84380797..84380800, + |
| 8.65e-70 | FFCP PHASE1:Hg19::chr17:9745568..9745583,+#_2f445531719a879d24abe5172f9c7c62 | p8@GLP2R |
| 8.65e-70 | FFCP PHASE2:Hg19::chr2:233246828..233246839,+#_2f445531719a879d24abe5172f9c7c62 | p4@ALPP |
| 8.65e-70 | FFCP PHASE2:Hg19::chr5:147582537..147582549,+#_2f445531719a879d24abe5172f9c7c62 | p4@SPINK6 |
| 8.65e-70 | FFCP PHASE2:Hg19::chr2:233243964..233243976,+#_2f445531719a879d24abe5172f9c7c62 | p@chr2:233243964..233243976, + |
| 8.65e-70 | FFCP PHASE1:Hg19::chr2:233246828..233246839,+#_2f445531719a879d24abe5172f9c7c62 | p4@ALPP |
| 8.65e-70 | FFCP PHASE1:Hg19::chr4:134076121..134076131,+#_2f445531719a879d24abe5172f9c7c62 | p15@PCDH10 |
| 8.65e-70 | FFCP PHASE1:Hg19::chr5:147582537..147582549,+#_2f445531719a879d24abe5172f9c7c62 | p4@SPINK6 |
| 8.65e-70 | FFCP PHASE2:Hg19::chr4:134076121..134076131,+#_2f445531719a879d24abe5172f9c7c62 | p15@PCDH10 |
| 8.65e-70 | FFCP PHASE2:Hg19::chr17:9745568..9745583,+#_2f445531719a879d24abe5172f9c7c62 | p8@GLP2R |
| 8.65e-70 | FFCP PHASE1:Hg19::chr2:233243964..233243976,+#_2f445531719a879d24abe5172f9c7c62 | p@chr2:233243964..233243976, + |
| 9.37e-70 | FFCP PHASE1:Hg19::chr8:128231456..128231465,-#_ad75d9b21f266c435b881d318e97def2 | p13@ENST00000500112, p13@uc003ysa.1 |
| 9.37e-70 | FFCP PHASE2:Hg19::chr8:128231456..128231465,-#_ad75d9b21f266c435b881d318e97def2 | p13@ENST00000500112, p13@uc003ysa.1 |
| 1.02e-69 | FFCP PHASE2:Hg19::chr1:207262478..207262493,+#_441a58d71d76058a11c525ce90ea48e7 | p14@C4BPB |
| 1.02e-69 | FFCP PHASE1:Hg19::chr1:207262478..207262493,+#_441a58d71d76058a11c525ce90ea48e7 | p14@C4BPB |
| 1.29e-69 | FFCP PHASE2:Hg19::chr2:233324211..233324229,-#_7996141dc0e4652c3d74435722bb8331 | p@chr2:233324211..233324229, - |
| 1.29e-69 | FFCP PHASE1:Hg19::chr2:233324211..233324229,-#_7996141dc0e4652c3d74435722bb8331 | p@chr2:233324211..233324229, - |
| 1.29e-69 | FFCP PHASE2:Hg19::chr2:233321333..233321358,+#_7996141dc0e4652c3d74435722bb8331 | p@chr2:233321333..233321358, + |
| 1.29e-69 | FFCP PHASE1:Hg19::chr2:233321333..233321358,+#_7996141dc0e4652c3d74435722bb8331 | p@chr2:233321333..233321358, + |
| 1.4e-69 | FFCP PHASE1:Hg19::chr2:211427642..211427670,+#_b75d117675255e837429ff25563fd4c3 | p@chr2:211427642..211427670, + |
| 1.4e-69 | FFCP PHASE2:Hg19::chr2:211427642..211427670,+#_b75d117675255e837429ff25563fd4c3 | p@chr2:211427642..211427670, + |
