Personal tools

UBERON:0001230: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001230
|alt_id=UBERON:FMA_15626-MA_0001660
|name=glomerular capsule
|namespace=
|def="The Bowman's capsule is a cup-like sac at the beginning of the tubular component of a nephron in the mammalian kidney. A glomerulus is enclosed in the sac. Fluids from blood in the glomerulus are collected in the Bowman's capsule and further processed along the nephron to form urine. This process is known as ultrafiltration. [WP,unvetted]." [Wikipedia:Bowman%27s_capsule]
|xref=AAO:0010526;;BTO:0002297;;EMAPA:27973;;EMAPA:28257;;FMA:15626;;http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1130.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1130.svg/200px-Gray1130.svg.png;;KUPO:0001001;;MA:0001660;;ncithesaurus:Bowman_s_Capsule;;SCTID:361331000;;TAO:0005254;;TAO:0005310;;ZFA:0005254;;ZFA:0005310
|is_a=UBERON:0000064;;UBERON:0006554
|synonym="Bowman's capsule" EXACT [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron];;"Bowmans capsule" EXACT [KUPO:0001001]
|comment=One fold of the S-shaped body gives rise to Bowman遯ｶ蜀ｱ capsule[GUDMAP]
|comment=One fold of the S-shaped body gives rise to Bowman遯ｶ蜀ｱ capsule[GUDMAP]
|alt_id=UBERON:FMA_15626-MA_0001660
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The Bowman's capsule is a cup-like sac at the beginning of the tubular component of a nephron in the mammalian kidney. A glomerulus is enclosed in the sac. Fluids from blood in the glomerulus are collected in the Bowman's capsule and further processed along the nephron to form urine. This process is known as ultrafiltration. [WP,unvetted]." [Wikipedia:Bowman%27s_capsule]
|subset=uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0004199
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001230
|is_a=UBERON:0000064 ;;UBERON:0006554
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=glomerular capsule
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001229
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure found in the kidney consisting of an expanded end of a kidney tubule surrounding a glomerulus and is the major site of filtration.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure found in the kidney consisting of an expanded end of a kidney tubule surrounding a glomerulus and is the major site of filtration.[AAO]" xsd:string
|is_obsolete=
|subset=uberon_slim;;vertebrate_core
|preceded_by=
|synonym="Bowman's capsule" EXACT [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron];;"Bowmans capsule" EXACT [KUPO:0001001]
|union_of=
|xref=AAO:0010526;;BTO:0002297;;EMAPA:27973;;EMAPA:28257;;FMA:15626;;http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1130.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1130.svg/200px-Gray1130.svg.png;;KUPO:0001001;;MA:0001660;;ncithesaurus:Bowman_s_Capsule;;SCTID:361331000;;TAO:0005254;;TAO:0005310;;ZFA:0005254;;ZFA:0005310
}}
}}

Latest revision as of 17:16, 12 September 2014

Name:glomerular capsule
Namespace:FANTOM
Definition:"The Bowman's capsule is a cup-like sac at the beginning of the tubular component of a nephron in the mammalian kidney. A glomerulus is enclosed in the sac. Fluids from blood in the glomerulus are collected in the Bowman's capsule and further processed along the nephron to form urine. This process is known as ultrafiltration. [WP,unvetted]." [Wikipedia:Bowman%27s_capsule]
Xrefs:
links:

AAO:0010526
BTO:0002297
EMAPA:27973
EMAPA:28257
FMA:15626
[1]
[ 200px-Gray1130.svg.png 200px-Gray1130.svg.png]
KUPO:0001001
MA:0001660
ncithesaurus:Bowman_s_Capsule
SCTID:361331000
TAO:0005254
TAO:0005310
ZFA:0005254

ZFA:0005310
Synonyms: "Bowman's capsule" EXACT [2]
"Bowmans capsule" EXACT [KUPO:0001001]
Comments:One fold of the S-shaped body gives rise to Bowman遯ｶ蜀ｱ capsule[GUDMAP]
Alt_id: UBERON:FMA_15626-MA_0001660
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part),UBERON:0006554(urinary system structure)
develops_from:UBERON:0004199(S-shaped body)
part_of:UBERON:0001229(renal corpuscle)



Children

part of:UBERON:0005749 (glomerular tuft)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001230 (glomerular capsule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.87e-64FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_e7d0f9f44dcc2fdf1df564bf222dcd8cp@chr2:120409486..120409492, +
6.87e-64FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_e7d0f9f44dcc2fdf1df564bf222dcd8cp@chr2:120409486..120409492, +
9.62e-40FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_2180156f83f8bbe85e52b23168d8a57ap1@ENST00000413103
9.62e-40FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_2180156f83f8bbe85e52b23168d8a57ap1@ENST00000413103
1.16e-36FFCP PHASE2:Hg19::chr17:79426453..79426462,+#_297162f83033179a0e739ebd9f88c194p@chr17:79426453..79426462, +
1.16e-36FFCP PHASE1:Hg19::chr17:79426453..79426462,+#_297162f83033179a0e739ebd9f88c194p@chr17:79426453..79426462, +
1.31e-36FFCP PHASE1:Hg19::chr8:77557753..77557755,-#_16e6214c3e96bc75535950ec1a7413b8p@chr8:77557753..77557755, -
1.31e-36FFCP PHASE2:Hg19::chr8:77557753..77557755,-#_16e6214c3e96bc75535950ec1a7413b8p@chr8:77557753..77557755, -
5.58e-32FFCP PHASE2:Hg19::chr1:32042764..32042776,+#_5d174e8e6b4123743ae0d5911015f266p6@TINAGL1
5.58e-32FFCP PHASE1:Hg19::chr1:32042764..32042776,+#_5d174e8e6b4123743ae0d5911015f266p6@TINAGL1
1.53e-30FFCP PHASE1:Hg19::chr15:91416076..91416089,+#_91f541b3e622d9beb8a62150411ea178p9@FURIN
1.53e-30FFCP PHASE2:Hg19::chr15:91416076..91416089,+#_91f541b3e622d9beb8a62150411ea178p9@FURIN
3.83e-30FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_41ac9cf2c60c907d7ebff05093897062p7@LRRN4
3.83e-30FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_41ac9cf2c60c907d7ebff05093897062p7@LRRN4
1.78e-29FFCP PHASE1:Hg19::chr22:47030082..47030087,+#_491ab00c6c920f6a20abd63c05951e9cp@chr22:47030082..47030087, +
1.78e-29FFCP PHASE2:Hg19::chr1:42777312..42777314,+#_491ab00c6c920f6a20abd63c05951e9cp@chr1:42777312..42777314, +
1.78e-29FFCP PHASE2:Hg19::chr2:26700984..26700993,-#_491ab00c6c920f6a20abd63c05951e9cp7@OTOF
1.78e-29FFCP PHASE2:Hg19::chr6:18225523..18225534,-#_491ab00c6c920f6a20abd63c05951e9cp@chr6:18225523..18225534, -
1.78e-29FFCP PHASE2:Hg19::chr2:26700331..26700340,-#_491ab00c6c920f6a20abd63c05951e9cp@chr2:26700331..26700340, -
1.78e-29FFCP PHASE1:Hg19::chr1:42777312..42777314,+#_491ab00c6c920f6a20abd63c05951e9cp@chr1:42777312..42777314, +
1.78e-29FFCP PHASE1:Hg19::chr2:26700984..26700993,-#_491ab00c6c920f6a20abd63c05951e9cp7@OTOF
1.78e-29FFCP PHASE1:Hg19::chr6:18225523..18225534,-#_491ab00c6c920f6a20abd63c05951e9cp@chr6:18225523..18225534, -
1.78e-29FFCP PHASE2:Hg19::chr22:47030082..47030087,+#_491ab00c6c920f6a20abd63c05951e9cp@chr22:47030082..47030087, +
1.78e-29FFCP PHASE1:Hg19::chr2:26700331..26700340,-#_491ab00c6c920f6a20abd63c05951e9cp@chr2:26700331..26700340, -
7.96e-27FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_1c0ac78a8286c61ebb7fe4b63e68bc4dp@chr10:3477893..3477912, -
7.96e-27FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_1c0ac78a8286c61ebb7fe4b63e68bc4dp@chr10:3477893..3477912, -
6.29e-26FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_5dfa1cf03a191c5fb10ef2cf38d67e32p@chr1:172926077..172926120, -
6.29e-26FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_5dfa1cf03a191c5fb10ef2cf38d67e32p@chr1:172926077..172926120, -
6.32e-26FFCP PHASE1:Hg19::chrX:128782722..128782738,-#_91412f019c00dda53fee08eb28e1eb82p5@APLN
6.32e-26FFCP PHASE2:Hg19::chrX:128782722..128782738,-#_91412f019c00dda53fee08eb28e1eb82p5@APLN
9.89e-26FFCP PHASE1:Hg19::chr2:693380..693398,+#_d1d1bd250d052ac3a10e1bf937c861d5p@chr2:693380..693398, +
9.89e-26FFCP PHASE2:Hg19::chr2:693380..693398,+#_d1d1bd250d052ac3a10e1bf937c861d5p@chr2:693380..693398, +
1.28e-23FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_e9c8a2362e6fc65e27c2173ac80c9c9ap@chr2:133426030..133426041, -
1.28e-23FFCP PHASE2:Hg19::chr6:84849252..84849259,+#_e9c8a2362e6fc65e27c2173ac80c9c9ap@chr6:84849252..84849259, +
1.28e-23FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_e9c8a2362e6fc65e27c2173ac80c9c9ap@chr2:133426030..133426041, -
1.28e-23FFCP PHASE1:Hg19::chr6:84849252..84849259,+#_e9c8a2362e6fc65e27c2173ac80c9c9ap@chr6:84849252..84849259, +
1.44e-23FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_5cfc8493a45fc941ed520d13404da091p23@TTC39A
1.44e-23FFCP PHASE2:Hg19::chr7:28998254..28998261,-#_5cfc8493a45fc941ed520d13404da091p10@TRIL
1.44e-23FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_5cfc8493a45fc941ed520d13404da091p23@TTC39A
1.44e-23FFCP PHASE1:Hg19::chr7:28998254..28998261,-#_5cfc8493a45fc941ed520d13404da091p10@TRIL
1.61e-23FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_1eddfee44f4ab60bc4f27277366f10a6p@chr15:85403302..85403304, +
1.61e-23FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_1eddfee44f4ab60bc4f27277366f10a6p@chr7:4051097..4051112, +
1.61e-23FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_1eddfee44f4ab60bc4f27277366f10a6p@chr7:4051097..4051112, +
1.61e-23FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_1eddfee44f4ab60bc4f27277366f10a6p@chr15:85403302..85403304, +
1.8e-23FFCP PHASE2:Hg19::chr16:2141529..2141537,+#_8dd2364191a89e7ef5e355bc2330a120p@chr16:2141529..2141537, +
1.8e-23FFCP PHASE1:Hg19::chr16:2141529..2141537,+#_8dd2364191a89e7ef5e355bc2330a120p@chr16:2141529..2141537, +
2.92e-22FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_7ebd35d2a80a2ad19dbea94912ca5233p@chr5:74244100..74244117, +
2.92e-22FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_7ebd35d2a80a2ad19dbea94912ca5233p@chr5:74244100..74244117, +
5.69e-22FFCP PHASE2:Hg19::chr5:148651758..148651769,-#_82c399ea10469267f6ef4c4162366b2dp@chr5:148651758..148651769, -
5.69e-22FFCP PHASE1:Hg19::chr5:148651758..148651769,-#_82c399ea10469267f6ef4c4162366b2dp@chr5:148651758..148651769, -
2.9e-21FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_ab092c0dbf4547c84f7994ba41bc17dcp@chr16:86768403..86768437, +
2.9e-21FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_ab092c0dbf4547c84f7994ba41bc17dcp@chr16:86768403..86768437, +
4.78e-21FFCP PHASE1:Hg19::chr17:2076002..2076026,-#_a4de870e64770504718f6d235192ee13p@chr17:2076002..2076026, -
4.78e-21FFCP PHASE2:Hg19::chr17:2076002..2076026,-#_a4de870e64770504718f6d235192ee13p@chr17:2076002..2076026, -
1.26e-20FFCP PHASE2:Hg19::chr1:32712897..32712909,+#_5e40d48f7ecbbed3d279382b4c4cc9e8p3@FAM167B
1.26e-20FFCP PHASE1:Hg19::chr1:32712897..32712909,+#_5e40d48f7ecbbed3d279382b4c4cc9e8p3@FAM167B
2.32e-20FFCP PHASE1:Hg19::chr11:124628392..124628427,-#_57f140eeb20e3d366266332f0a166c42p@chr11:124628392..124628427, -
2.32e-20FFCP PHASE2:Hg19::chr11:124628392..124628427,-#_57f140eeb20e3d366266332f0a166c42p@chr11:124628392..124628427, -
3.42e-20FFCP PHASE1:Hg19::chr3:98591021..98591026,-#_9efe8da278b1f80fde8a7f9d61ba9368p1@ENST00000487339
3.42e-20FFCP PHASE2:Hg19::chr3:98591021..98591026,-#_9efe8da278b1f80fde8a7f9d61ba9368p1@ENST00000487339
3.44e-20FFCP PHASE2:Hg19::chr19:47231340..47231383,-#_0cdd25374a6cc533f43225fdb84a719dp@chr19:47231340..47231383, -
3.44e-20FFCP PHASE1:Hg19::chr19:47231340..47231383,-#_0cdd25374a6cc533f43225fdb84a719dp@chr19:47231340..47231383, -
3.58e-20FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_f6b2cad9690be4aad4077b21adc3a513p@chr19:1826957..1826984, -
3.58e-20FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_f6b2cad9690be4aad4077b21adc3a513p@chr19:1826957..1826984, -
4.39e-20FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_6c5ba727b091cc42bbd23a4daa10e9d7p@chr4:38057595..38057624, -
4.39e-20FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_6c5ba727b091cc42bbd23a4daa10e9d7p@chr4:38057595..38057624, -
7.13e-20FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_2acb5fc2e2d44d0621660c41ab3e1c50p@chr2:133426106..133426117, -
7.13e-20FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_2acb5fc2e2d44d0621660c41ab3e1c50p@chr2:133426106..133426117, -
7.84e-20FFCP PHASE2:Hg19::chr9:35753821..35753835,-#_410b3b11b86c1eeefe45f48c0922ec79p@chr9:35753821..35753835, -
7.84e-20FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_410b3b11b86c1eeefe45f48c0922ec79p@chr15:36653709..36653720, -
7.84e-20FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_410b3b11b86c1eeefe45f48c0922ec79p@chr15:36653709..36653720, -
7.84e-20FFCP PHASE1:Hg19::chr9:35753821..35753835,-#_410b3b11b86c1eeefe45f48c0922ec79p@chr9:35753821..35753835, -
8.62e-20FFCP PHASE2:Hg19::chr4:145568170..145568180,-#_97df2be6694e88379466fd72d7080a52p@chr4:145568170..145568180, -
8.62e-20FFCP PHASE1:Hg19::chr4:145568170..145568180,-#_97df2be6694e88379466fd72d7080a52p@chr4:145568170..145568180, -
1.04e-19FFCP PHASE1:Hg19::chr19:38397228..38397266,-#_ad7bb940b7a21fa14a0c14c174b8d92ep1@WDR87
1.04e-19FFCP PHASE2:Hg19::chr19:38397228..38397266,-#_ad7bb940b7a21fa14a0c14c174b8d92ep1@WDR87
1.15e-19FFCP PHASE2:Hg19::chr14:91270270..91270281,-#_4639d158ad39e9b3f80a976fbc1ac9f0p@chr14:91270270..91270281, -
1.15e-19FFCP PHASE1:Hg19::chr14:91270270..91270281,-#_4639d158ad39e9b3f80a976fbc1ac9f0p@chr14:91270270..91270281, -
2.44e-19FFCP PHASE1:Hg19::chr12:52306196..52306215,+#_25067e386d17b6b53f5e350018ee87b0p6@ACVRL1
2.44e-19FFCP PHASE2:Hg19::chr12:52306196..52306215,+#_25067e386d17b6b53f5e350018ee87b0p6@ACVRL1
3.27e-19FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_cf1d2a6e0f19d250ca69d957cfa63d79p@chr3:43538305..43538325, -
3.27e-19FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_cf1d2a6e0f19d250ca69d957cfa63d79p@chr3:43538305..43538325, -
4.64e-19FFCP PHASE1:Hg19::chr17:171147..171161,+#_96735087ce07b97844408cd6127be310p@chr17:171147..171161, +
4.64e-19FFCP PHASE2:Hg19::chr17:171147..171161,+#_96735087ce07b97844408cd6127be310p@chr17:171147..171161, +
5.39e-19FFCP PHASE2:Hg19::chr1:22211913..22211920,+#_5f74a123ef0aaaa6e486f8b335a496e5p@chr1:22211913..22211920, +
5.39e-19FFCP PHASE1:Hg19::chr1:22211913..22211920,+#_5f74a123ef0aaaa6e486f8b335a496e5p@chr1:22211913..22211920, +
1.99e-18FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_08e64f6c1f6662517a1523ef65d4a6b2p7@HOXA10
1.99e-18FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_08e64f6c1f6662517a1523ef65d4a6b2p7@HOXA10
2.69e-18FFCP PHASE1:Hg19::chr1:32041957..32041990,+#_77efd865b366261444841be945750f76p3@TINAGL1
2.69e-18FFCP PHASE2:Hg19::chr1:32041957..32041990,+#_77efd865b366261444841be945750f76p3@TINAGL1
4.1e-18FFCP PHASE1:Hg19::chr6:132270228..132270243,-#_981f5aa8d3e60cd2fe48039e8a4d8ed2p17@CTGF
4.1e-18FFCP PHASE2:Hg19::chr6:132270228..132270243,-#_981f5aa8d3e60cd2fe48039e8a4d8ed2p17@CTGF
5.7e-18FFCP PHASE1:Hg19::chr11:940729..940745,+#_e2133ea53eac1704b0d059c4da3463e7p5@AP2A2
5.7e-18FFCP PHASE2:Hg19::chr11:940729..940745,+#_e2133ea53eac1704b0d059c4da3463e7p5@AP2A2
6.5e-18FFCP PHASE1:Hg19::chr19:42007093..42007107,-#_6b6533d529869c506374fba88feefb27p@chr19:42007093..42007107, -
6.5e-18FFCP PHASE2:Hg19::chr19:42007093..42007107,-#_6b6533d529869c506374fba88feefb27p@chr19:42007093..42007107, -
6.99e-18FFCP PHASE1:Hg19::chrX:128781853..128781866,-#_c60fa069a080c68b06980d5c5719627dp@chrX:128781853..128781866, -
6.99e-18FFCP PHASE2:Hg19::chrX:128781853..128781866,-#_c60fa069a080c68b06980d5c5719627dp@chrX:128781853..128781866, -
1.24e-17FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_86a1608115d90cae73b4500af0331939p@chr16:86604624..86604648, +
1.24e-17FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_86a1608115d90cae73b4500af0331939p@chr16:86604624..86604648, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure found in the kidney consisting of an expanded end of a kidney tubule surrounding a glomerulus and is the major site of filtration.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001230&oldid=3277214"