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{{UBERON
{{UBERON
|id=UBERON:0000358
|alt_id=UBERON:BTO_0001099-FMA_83041
|name=blastocyst
|namespace=
|def="The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]." [GO:0001824, Wikipedia:Blastocyst]
|xref=BTO:0001099;;EFO:0000295;;EV:0100394;;FMA:83041;;GAID:1153;;http://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png;;MESH:A.16.254.085;;ncithesaurus:Blastocyst;;OGEM:000006;;SCTID:308837009
|is_a=UBERON:0002050
|synonym="blastocystis" RELATED LATIN [Wikipedia:Blastocyst];;"blastula" RELATED [FMA:83041]
|comment=
|comment=
|alt_id=UBERON:BTO_0001099-FMA_83041
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]." [GO:0001824, Wikipedia:Blastocyst]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0000085
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000358
|is_a=UBERON:0002050
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=blastocyst
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000307
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="blastocystis" RELATED LATIN [Wikipedia:Blastocyst];;"blastula" RELATED [FMA:83041]
|union_of=
|xref=BTO:0001099;;EFO:0000295;;EV:0100394;;FMA:83041;;GAID:1153;;http://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png;;MESH:A.16.254.085;;ncithesaurus:Blastocyst;;OGEM:000006;;SCTID:308837009
}}
}}

Latest revision as of 17:08, 12 September 2014

Name:blastocyst
Namespace:FANTOM
Definition:"The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]." [GO:0001824, Wikipedia:Blastocyst]
Xrefs:
links:

BTO:0001099
EFO:0000295
EV:0100394
FMA:83041
GAID:1153
[1]
[ 200px-Blastocyst_English.svg.png 200px-Blastocyst_English.svg.png]
MESH:A.16.254.085
ncithesaurus:Blastocyst
OGEM:000006

SCTID:308837009
Synonyms: "blastocystis" RELATED LATIN [Wikipedia:Blastocyst]
"blastula" RELATED [FMA:83041]
Alt_id: UBERON:BTO_0001099-FMA_83041

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002050(embryonic structure)
develops_from:UBERON:0000085(morula)
part_of:UBERON:0000307(blastula)



Children

develops from:UBERON:0000087 (inner cell mass)
part of:UBERON:0000088 (trophoblast),CL:0000351 (trophoblast cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000358 (blastocyst), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr8:28338006..28338016,-#_a6617988b5b14c67940338d6c4ae71ccp@chr8:28338006..28338016, -
1.58e-86FFCP PHASE2:Mm9::chrX:35180221..35180224,+#_a6617988b5b14c67940338d6c4ae71ccp1@Rhox6
1.58e-86FFCP PHASE1:Mm9::chr9:122510273..122510281,+#_a6617988b5b14c67940338d6c4ae71ccp@chr9:122510273..122510281, +
1.58e-86FFCP PHASE1:Mm9::chr13:109236868..109236869,+#_a6617988b5b14c67940338d6c4ae71ccp@chr13:109236868..109236869, +
1.58e-86FFCP PHASE2:Mm9::chr11:78698925..78698930,+#_a6617988b5b14c67940338d6c4ae71ccp@chr11:78698925..78698930, +
1.58e-86FFCP PHASE2:Mm9::chr6:12861081..12861085,+#_a6617988b5b14c67940338d6c4ae71ccp@chr6:12861081..12861085, +
1.58e-86FFCP PHASE2:Mm9::chrX:135868692..135868701,+#_a6617988b5b14c67940338d6c4ae71ccp@chrX:135868692..135868701, +
1.58e-86FFCP PHASE2:Mm9::chr14:55557319..55557330,+#_a6617988b5b14c67940338d6c4ae71ccp7@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr14:55557307..55557316,+#_a6617988b5b14c67940338d6c4ae71ccp11@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr17:66833174..66833180,-#_a6617988b5b14c67940338d6c4ae71ccp@chr17:66833174..66833180, -
1.58e-86FFCP PHASE2:Mm9::chr2:10444938..10444948,+#_a6617988b5b14c67940338d6c4ae71ccp@chr2:10444938..10444948, +
1.58e-86FFCP PHASE1:Mm9::chrX:135868788..135868795,+#_a6617988b5b14c67940338d6c4ae71ccp@chrX:135868788..135868795, +
1.58e-86FFCP PHASE1:Mm9::chr11:114739327..114739352,+#_a6617988b5b14c67940338d6c4ae71ccp@chr11:114739327..114739352, +
1.58e-86FFCP PHASE2:Mm9::chrX:22692718..22692721,+#_a6617988b5b14c67940338d6c4ae71ccp@chrX:22692718..22692721, +
1.58e-86FFCP PHASE1:Mm9::chr9:59378043..59378047,-#_a6617988b5b14c67940338d6c4ae71ccp@chr9:59378043..59378047, -
1.58e-86FFCP PHASE1:Mm9::chr8:44265871..44265878,+#_a6617988b5b14c67940338d6c4ae71ccp2@Triml2
1.58e-86FFCP PHASE2:Mm9::chr3:51025125..51025133,+#_a6617988b5b14c67940338d6c4ae71ccp@chr3:51025125..51025133, +
1.58e-86FFCP PHASE1:Mm9::chr6:12861081..12861085,+#_a6617988b5b14c67940338d6c4ae71ccp@chr6:12861081..12861085, +
1.58e-86FFCP PHASE2:Mm9::chr9:59378043..59378047,-#_a6617988b5b14c67940338d6c4ae71ccp@chr9:59378043..59378047, -
1.58e-86FFCP PHASE1:Mm9::chr4:9880126..9880128,+#_a6617988b5b14c67940338d6c4ae71ccp@chr4:9880126..9880128, +
1.58e-86FFCP PHASE1:Mm9::chrX:35180221..35180224,+#_a6617988b5b14c67940338d6c4ae71ccp1@Rhox6
1.58e-86FFCP PHASE1:Mm9::chr8:44392310..44392319,-#_a6617988b5b14c67940338d6c4ae71ccp4@Zfp42
1.58e-86FFCP PHASE1:Mm9::chr1:174143295..174143309,-#_a6617988b5b14c67940338d6c4ae71ccp@chr1:174143295..174143309, -
1.58e-86FFCP PHASE2:Mm9::chrX:132804797..132804808,+#_a6617988b5b14c67940338d6c4ae71ccp4@Ngfrap1
1.58e-86FFCP PHASE2:Mm9::chr19:53750863..53750906,+#_a6617988b5b14c67940338d6c4ae71ccp@chr19:53750863..53750906, +
1.58e-86FFCP PHASE2:Mm9::chrX:135868788..135868795,+#_a6617988b5b14c67940338d6c4ae71ccp@chrX:135868788..135868795, +
1.58e-86FFCP PHASE1:Mm9::chr14:55557319..55557330,+#_a6617988b5b14c67940338d6c4ae71ccp7@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr17:6988793..6988807,-#_a6617988b5b14c67940338d6c4ae71ccp@chr17:6988793..6988807, -
1.58e-86FFCP PHASE2:Mm9::chr4:133574662..133574669,-#_a6617988b5b14c67940338d6c4ae71ccp2@Lin28a
1.58e-86FFCP PHASE1:Mm9::chrX:22692718..22692721,+#_a6617988b5b14c67940338d6c4ae71ccp@chrX:22692718..22692721, +
1.58e-86FFCP PHASE1:Mm9::chr12:87810964..87810976,-#_a6617988b5b14c67940338d6c4ae71ccp@chr12:87810964..87810976, -
1.58e-86FFCP PHASE1:Mm9::chr9:114472387..114472401,-#_a6617988b5b14c67940338d6c4ae71ccp@chr9:114472387..114472401, -
1.58e-86FFCP PHASE1:Mm9::chr2:10444938..10444948,+#_a6617988b5b14c67940338d6c4ae71ccp@chr2:10444938..10444948, +
1.58e-86FFCP PHASE2:Mm9::chr14:55556656..55556665,+#_a6617988b5b14c67940338d6c4ae71ccp@chr14:55556656..55556665, +
1.58e-86FFCP PHASE1:Mm9::chr16:66852878..66852880,+#_a6617988b5b14c67940338d6c4ae71ccp@chr16:66852878..66852880, +
1.58e-86FFCP PHASE2:Mm9::chr11:114739327..114739352,+#_a6617988b5b14c67940338d6c4ae71ccp@chr11:114739327..114739352, +
1.58e-86FFCP PHASE1:Mm9::chr6:122774653..122774665,+#_a6617988b5b14c67940338d6c4ae71ccp@chr6:122774653..122774665, +
1.58e-86FFCP PHASE2:Mm9::chr16:66852878..66852880,+#_a6617988b5b14c67940338d6c4ae71ccp@chr16:66852878..66852880, +
1.58e-86FFCP PHASE2:Mm9::chr13:109236868..109236869,+#_a6617988b5b14c67940338d6c4ae71ccp@chr13:109236868..109236869, +
1.58e-86FFCP PHASE2:Mm9::chr17:66833174..66833180,-#_a6617988b5b14c67940338d6c4ae71ccp@chr17:66833174..66833180, -
1.58e-86FFCP PHASE1:Mm9::chr16:44262965..44262975,-#_a6617988b5b14c67940338d6c4ae71ccp@chr16:44262965..44262975, -
1.58e-86FFCP PHASE2:Mm9::chr1:174143295..174143309,-#_a6617988b5b14c67940338d6c4ae71ccp@chr1:174143295..174143309, -
1.58e-86FFCP PHASE2:Mm9::chr8:44265871..44265878,+#_a6617988b5b14c67940338d6c4ae71ccp2@Triml2
1.58e-86FFCP PHASE2:Mm9::chr9:114472387..114472401,-#_a6617988b5b14c67940338d6c4ae71ccp@chr9:114472387..114472401, -
1.58e-86FFCP PHASE1:Mm9::chr3:51025125..51025133,+#_a6617988b5b14c67940338d6c4ae71ccp@chr3:51025125..51025133, +
1.58e-86FFCP PHASE2:Mm9::chr14:55557268..55557274,+#_a6617988b5b14c67940338d6c4ae71ccp14@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr14:55556656..55556665,+#_a6617988b5b14c67940338d6c4ae71ccp@chr14:55556656..55556665, +
1.58e-86FFCP PHASE1:Mm9::chr19:53750863..53750906,+#_a6617988b5b14c67940338d6c4ae71ccp@chr19:53750863..53750906, +
1.58e-86FFCP PHASE2:Mm9::chr14:55557459..55557474,+#_a6617988b5b14c67940338d6c4ae71ccp6@Cmtm5
1.58e-86FFCP PHASE2:Mm9::chr7:92689753..92689757,-#_a6617988b5b14c67940338d6c4ae71ccp@chr7:92689753..92689757, -
1.58e-86FFCP PHASE2:Mm9::chr13:68409910..68409914,+#_a6617988b5b14c67940338d6c4ae71ccp@chr13:68409910..68409914, +
1.58e-86FFCP PHASE2:Mm9::chr9:122510273..122510281,+#_a6617988b5b14c67940338d6c4ae71ccp@chr9:122510273..122510281, +
1.58e-86FFCP PHASE1:Mm9::chr4:133574662..133574669,-#_a6617988b5b14c67940338d6c4ae71ccp2@Lin28a
1.58e-86FFCP PHASE1:Mm9::chr11:78698925..78698930,+#_a6617988b5b14c67940338d6c4ae71ccp@chr11:78698925..78698930, +
1.58e-86FFCP PHASE2:Mm9::chr6:122774653..122774665,+#_a6617988b5b14c67940338d6c4ae71ccp@chr6:122774653..122774665, +
1.58e-86FFCP PHASE2:Mm9::chr16:44262965..44262975,-#_a6617988b5b14c67940338d6c4ae71ccp@chr16:44262965..44262975, -
1.58e-86FFCP PHASE1:Mm9::chr8:28338006..28338016,-#_a6617988b5b14c67940338d6c4ae71ccp@chr8:28338006..28338016, -
1.58e-86FFCP PHASE2:Mm9::chr14:55557307..55557316,+#_a6617988b5b14c67940338d6c4ae71ccp11@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr14:55557268..55557274,+#_a6617988b5b14c67940338d6c4ae71ccp14@Cmtm5
1.58e-86FFCP PHASE2:Mm9::chr12:87810964..87810976,-#_a6617988b5b14c67940338d6c4ae71ccp@chr12:87810964..87810976, -
1.58e-86FFCP PHASE1:Mm9::chr13:68409910..68409914,+#_a6617988b5b14c67940338d6c4ae71ccp@chr13:68409910..68409914, +
1.58e-86FFCP PHASE1:Mm9::chrX:135868692..135868701,+#_a6617988b5b14c67940338d6c4ae71ccp@chrX:135868692..135868701, +
1.58e-86FFCP PHASE2:Mm9::chr4:9880126..9880128,+#_a6617988b5b14c67940338d6c4ae71ccp@chr4:9880126..9880128, +
1.58e-86FFCP PHASE2:Mm9::chr8:44392310..44392319,-#_a6617988b5b14c67940338d6c4ae71ccp4@Zfp42
1.58e-86FFCP PHASE1:Mm9::chrX:132804797..132804808,+#_a6617988b5b14c67940338d6c4ae71ccp4@Ngfrap1
1.58e-86FFCP PHASE2:Mm9::chr17:6988793..6988807,-#_a6617988b5b14c67940338d6c4ae71ccp@chr17:6988793..6988807, -
1.58e-86FFCP PHASE1:Mm9::chr7:92689753..92689757,-#_a6617988b5b14c67940338d6c4ae71ccp@chr7:92689753..92689757, -
1.58e-86FFCP PHASE1:Mm9::chr14:55557459..55557474,+#_a6617988b5b14c67940338d6c4ae71ccp6@Cmtm5
5.79e-79FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_d850aadccfe6042ebfe125b2fced6b18p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_d850aadccfe6042ebfe125b2fced6b18p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_d850aadccfe6042ebfe125b2fced6b18p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_d850aadccfe6042ebfe125b2fced6b18p@chr7:135931480..135931486, +
1.33e-65FFCP PHASE2:Mm9::chr5:30062362..30062371,+#_dcf0b74b58ec955f2133f37552864ac5p6@Dnajb6
1.33e-65FFCP PHASE1:Mm9::chr1:174143273..174143293,-#_dcf0b74b58ec955f2133f37552864ac5p@chr1:174143273..174143293, -
1.33e-65FFCP PHASE1:Mm9::chr5:66542571..66542582,-#_dcf0b74b58ec955f2133f37552864ac5p13@Rbm47
1.33e-65FFCP PHASE2:Mm9::chr8:44392345..44392363,-#_dcf0b74b58ec955f2133f37552864ac5p1@Zfp42
1.33e-65FFCP PHASE1:Mm9::chr8:44392404..44392412,-#_dcf0b74b58ec955f2133f37552864ac5p3@Zfp42
1.33e-65FFCP PHASE1:Mm9::chr9:114472360..114472371,-#_dcf0b74b58ec955f2133f37552864ac5p@chr9:114472360..114472371, -
1.33e-65FFCP PHASE1:Mm9::chr16:53576572..53576579,+#_dcf0b74b58ec955f2133f37552864ac5p@chr16:53576572..53576579, +
1.33e-65FFCP PHASE1:Mm9::chr2:172371713..172371724,+#_dcf0b74b58ec955f2133f37552864ac5p@chr2:172371713..172371724, +
1.33e-65FFCP PHASE2:Mm9::chr14:55557416..55557422,+#_dcf0b74b58ec955f2133f37552864ac5p13@Cmtm5
1.33e-65FFCP PHASE2:Mm9::chr1:174143273..174143293,-#_dcf0b74b58ec955f2133f37552864ac5p@chr1:174143273..174143293, -
1.33e-65FFCP PHASE2:Mm9::chr8:109128151..109128162,+#_dcf0b74b58ec955f2133f37552864ac5p5@Cdh1
1.33e-65FFCP PHASE2:Mm9::chr9:114472360..114472371,-#_dcf0b74b58ec955f2133f37552864ac5p@chr9:114472360..114472371, -
1.33e-65FFCP PHASE1:Mm9::chr2:155572913..155572925,+#_dcf0b74b58ec955f2133f37552864ac5p@chr2:155572913..155572925, +
1.33e-65FFCP PHASE2:Mm9::chr9:118387933..118387942,+#_dcf0b74b58ec955f2133f37552864ac5p4@Eomes
1.33e-65FFCP PHASE1:Mm9::chr8:44392345..44392363,-#_dcf0b74b58ec955f2133f37552864ac5p1@Zfp42
1.33e-65FFCP PHASE1:Mm9::chr9:118387933..118387942,+#_dcf0b74b58ec955f2133f37552864ac5p4@Eomes
1.33e-65FFCP PHASE1:Mm9::chr14:55557416..55557422,+#_dcf0b74b58ec955f2133f37552864ac5p13@Cmtm5
1.33e-65FFCP PHASE2:Mm9::chr13:120218522..120218537,+#_dcf0b74b58ec955f2133f37552864ac5p@chr13:120218522..120218537, +
1.33e-65FFCP PHASE2:Mm9::chr5:66542571..66542582,-#_dcf0b74b58ec955f2133f37552864ac5p13@Rbm47
1.33e-65FFCP PHASE2:Mm9::chr2:155572913..155572925,+#_dcf0b74b58ec955f2133f37552864ac5p@chr2:155572913..155572925, +
1.33e-65FFCP PHASE1:Mm9::chr5:30062362..30062371,+#_dcf0b74b58ec955f2133f37552864ac5p6@Dnajb6
1.33e-65FFCP PHASE2:Mm9::chr16:53576572..53576579,+#_dcf0b74b58ec955f2133f37552864ac5p@chr16:53576572..53576579, +
1.33e-65FFCP PHASE2:Mm9::chr8:44392404..44392412,-#_dcf0b74b58ec955f2133f37552864ac5p3@Zfp42
1.33e-65FFCP PHASE1:Mm9::chr8:109128151..109128162,+#_dcf0b74b58ec955f2133f37552864ac5p5@Cdh1
1.33e-65FFCP PHASE2:Mm9::chr2:172371713..172371724,+#_dcf0b74b58ec955f2133f37552864ac5p@chr2:172371713..172371724, +
1.33e-65FFCP PHASE1:Mm9::chr13:120218522..120218537,+#_dcf0b74b58ec955f2133f37552864ac5p@chr13:120218522..120218537, +
2.21e-65FFCP PHASE1:Mm9::chrX:132804817..132804822,+#_5a30c14884b2cc03cc2d80e8aa662f7ap5@Ngfrap1
2.21e-65FFCP PHASE1:Mm9::chr14:55556576..55556586,+#_5a30c14884b2cc03cc2d80e8aa662f7ap@chr14:55556576..55556586, +

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