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{{DOID
{{DOID
|id=DOID:3908
|alt_id=
|name=non-small cell lung carcinoma
|namespace=disease_ontology
|def=
|xref=MSH:D002289;;NCI:C2926;;SNOMEDCT_2010_1_31:254637007;;UMLS_CUI:C0007131
|is_a=DOID:3905
|synonym="Non-small cell lung cancer (disorder)" EXACT [SNOMEDCT_2005_07_31:254637007];;"NSCLC" EXACT [NCI2004_11_17:C2926];;"NSCLC" EXACT [CSP2005:4005-0042]
|comment=
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|obo_creation_date=
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|id=DOID:3908
|is_a=DOID:3905
|is_obsolete=
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|name=non-small cell lung carcinoma
|namespace=FANTOM
|obo_creation_date=
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|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="Non-small cell lung cancer (disorder)" EXACT [SNOMEDCT_2005_07_31:254637007];;"NSCLC" EXACT [NCI2004_11_17:C2926];;"NSCLC" EXACT [CSP2005:4005-0042]
|union_of=
|xref=MSH:D002289;;NCI:C2926;;SNOMEDCT_2010_1_31:254637007;;UMLS_CUI:C0007131
}}
}}

Latest revision as of 16:51, 12 September 2014

Name:non-small cell lung carcinoma
Namespace:FANTOM
Xrefs:
links:

MSH:D002289
NCI:C2926
SNOMEDCT_2010_1_31:254637007

UMLS_CUI:C0007131
Synonyms: "Non-small cell lung cancer (disorder)" EXACT [SNOMEDCT_2005_07_31:254637007]
"NSCLC" EXACT [NCI2004_11_17:C2926]
"NSCLC" EXACT [CSP2005:4005-0042]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:3905(lung carcinoma)



Children


is a:DOID:3910 (lung adenocarcinoma),DOID:4556 (lung large cell carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3908 (non-small cell lung carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.19e-53FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_f8448737c8ec2739731a1f31a8831942p@chr13:70823810..70823813, +
2.19e-53FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_f8448737c8ec2739731a1f31a8831942p@chr5:92526866..92526914, -
2.19e-53FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_f8448737c8ec2739731a1f31a8831942p@chr5:92526866..92526914, -
2.19e-53FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_f8448737c8ec2739731a1f31a8831942p@chr13:70823810..70823813, +
1.48e-40FFCP PHASE2:Hg19::chr6:33644021..33644058,+#_b5deded04545a234929b41f7ca36e34bp@chr6:33644021..33644058, +
1.48e-40FFCP PHASE1:Hg19::chr7:151169194..151169198,-#_b5deded04545a234929b41f7ca36e34bp17@RHEB
1.48e-40FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_b5deded04545a234929b41f7ca36e34bp1@ENST00000418699, p1@ENST00000432330
1.48e-40FFCP PHASE1:Hg19::chr17:63511856..63511858,-#_b5deded04545a234929b41f7ca36e34bp@chr17:63511856..63511858, -
1.48e-40FFCP PHASE1:Hg19::chr18:61368086..61368120,+#_b5deded04545a234929b41f7ca36e34bp@chr18:61368086..61368120, +
1.48e-40FFCP PHASE1:Hg19::chr14:88452908..88452916,-#_b5deded04545a234929b41f7ca36e34bp@chr14:88452908..88452916, -
1.48e-40FFCP PHASE1:Hg19::chr7:68735026..68735050,+#_b5deded04545a234929b41f7ca36e34bp@chr7:68735026..68735050, +
1.48e-40FFCP PHASE1:Hg19::chr1:188856590..188856595,-#_b5deded04545a234929b41f7ca36e34bp4@ENST00000414765
1.48e-40FFCP PHASE1:Hg19::chr6:166575975..166575983,-#_b5deded04545a234929b41f7ca36e34bp@chr6:166575975..166575983, -
1.48e-40FFCP PHASE1:Hg19::chr9:138393225..138393257,+#_b5deded04545a234929b41f7ca36e34bp@chr9:138393225..138393257, +
1.48e-40FFCP PHASE2:Hg19::chr20:2779236..2779242,-#_b5deded04545a234929b41f7ca36e34bp12@CPXM1
1.48e-40FFCP PHASE1:Hg19::chr16:11118533..11118538,+#_b5deded04545a234929b41f7ca36e34bp12@CLEC16A
1.48e-40FFCP PHASE2:Hg19::chr7:158237237..158237241,+#_b5deded04545a234929b41f7ca36e34bp@chr7:158237237..158237241, +
1.48e-40FFCP PHASE1:Hg19::chr3:63804973..63804980,+#_b5deded04545a234929b41f7ca36e34bp3@C3orf49
1.48e-40FFCP PHASE2:Hg19::chr6:22113639..22113643,+#_b5deded04545a234929b41f7ca36e34bp@chr6:22113639..22113643, +
1.48e-40FFCP PHASE2:Hg19::chrX:48056224..48056233,-#_b5deded04545a234929b41f7ca36e34bp1@SSX5
1.48e-40FFCP PHASE2:Hg19::chr2:75145327..75145329,+#_b5deded04545a234929b41f7ca36e34bp9@ENST00000435984
1.48e-40FFCP PHASE2:Hg19::chr10:101690855..101690861,-#_b5deded04545a234929b41f7ca36e34bp14@DNMBP
1.48e-40FFCP PHASE1:Hg19::chr14:36536932..36536937,-#_b5deded04545a234929b41f7ca36e34bp@chr14:36536932..36536937, -
1.48e-40FFCP PHASE2:Hg19::chr7:68735132..68735135,+#_b5deded04545a234929b41f7ca36e34bp@chr7:68735132..68735135, +
1.48e-40FFCP PHASE2:Hg19::chr1:188857554..188857562,-#_b5deded04545a234929b41f7ca36e34bp@chr1:188857554..188857562, -
1.48e-40FFCP PHASE2:Hg19::chr1:33886874..33886882,-#_b5deded04545a234929b41f7ca36e34bp@chr1:33886874..33886882, -
1.48e-40FFCP PHASE1:Hg19::chr12:40426483..40426524,-#_b5deded04545a234929b41f7ca36e34bp@chr12:40426483..40426524, -
1.48e-40FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_b5deded04545a234929b41f7ca36e34bp9@CPXM1
1.48e-40FFCP PHASE2:Hg19::chr1:234565260..234565271,-#_b5deded04545a234929b41f7ca36e34bp@chr1:234565260..234565271, -
1.48e-40FFCP PHASE2:Hg19::chr13:109644678..109644725,+#_b5deded04545a234929b41f7ca36e34bp@chr13:109644678..109644725, +
1.48e-40FFCP PHASE2:Hg19::chr3:63805044..63805054,+#_b5deded04545a234929b41f7ca36e34bp1@C3orf49
1.48e-40FFCP PHASE1:Hg19::chr12:75174802..75174809,+#_b5deded04545a234929b41f7ca36e34bp@chr12:75174802..75174809, +
1.48e-40FFCP PHASE1:Hg19::chr7:158225991..158225999,+#_b5deded04545a234929b41f7ca36e34bp@chr7:158225991..158225999, +
1.48e-40FFCP PHASE1:Hg19::chr6:138060034..138060045,-#_b5deded04545a234929b41f7ca36e34bp1@ENST00000411615, p1@ENST00000419220
1.48e-40FFCP PHASE1:Hg19::chr14:88452922..88452929,-#_b5deded04545a234929b41f7ca36e34bp@chr14:88452922..88452929, -
1.48e-40FFCP PHASE2:Hg19::chr1:68927028..68927036,-#_b5deded04545a234929b41f7ca36e34bp@chr1:68927028..68927036, -
1.48e-40FFCP PHASE2:Hg19::chr16:3332452..3332454,+#_b5deded04545a234929b41f7ca36e34bp@chr16:3332452..3332454, +
1.48e-40FFCP PHASE2:Hg19::chr1:188856517..188856523,-#_b5deded04545a234929b41f7ca36e34bp1@ENST00000414765
1.48e-40FFCP PHASE1:Hg19::chr7:68735078..68735090,+#_b5deded04545a234929b41f7ca36e34bp@chr7:68735078..68735090, +
1.48e-40FFCP PHASE1:Hg19::chr2:115929667..115929677,+#_b5deded04545a234929b41f7ca36e34bp@chr2:115929667..115929677, +
1.48e-40FFCP PHASE1:Hg19::chr2:33589897..33589917,+#_b5deded04545a234929b41f7ca36e34bp@chr2:33589897..33589917, +
1.48e-40FFCP PHASE1:Hg19::chr1:33886864..33886872,-#_b5deded04545a234929b41f7ca36e34bp@chr1:33886864..33886872, -
1.48e-40FFCP PHASE1:Hg19::chr5:5558678..5558683,+#_b5deded04545a234929b41f7ca36e34bp@chr5:5558678..5558683, +
1.48e-40FFCP PHASE2:Hg19::chr6:166582133..166582149,-#_b5deded04545a234929b41f7ca36e34bp1@T
1.48e-40FFCP PHASE1:Hg19::chrX:105065622..105065627,+#_b5deded04545a234929b41f7ca36e34bp@chrX:105065622..105065627, +
1.48e-40FFCP PHASE2:Hg19::chr20:2779313..2779314,-#_b5deded04545a234929b41f7ca36e34bp16@CPXM1
1.48e-40FFCP PHASE2:Hg19::chr7:158242968..158242975,+#_b5deded04545a234929b41f7ca36e34bp@chr7:158242968..158242975, +
1.48e-40FFCP PHASE1:Hg19::chr21:11130568..11130575,+#_b5deded04545a234929b41f7ca36e34bp@chr21:11130568..11130575, +
1.48e-40FFCP PHASE1:Hg19::chr6:145434485..145434492,+#_b5deded04545a234929b41f7ca36e34bp@chr6:145434485..145434492, +
1.48e-40FFCP PHASE1:Hg19::chr6:33644021..33644058,+#_b5deded04545a234929b41f7ca36e34bp@chr6:33644021..33644058, +
1.48e-40FFCP PHASE2:Hg19::chr10:101691056..101691064,-#_b5deded04545a234929b41f7ca36e34bp13@DNMBP
1.48e-40FFCP PHASE2:Hg19::chr3:26426173..26426176,+#_b5deded04545a234929b41f7ca36e34bp@chr3:26426173..26426176, +
1.48e-40FFCP PHASE2:Hg19::chr7:68735137..68735150,+#_b5deded04545a234929b41f7ca36e34bp@chr7:68735137..68735150, +
1.48e-40FFCP PHASE2:Hg19::chr1:188861179..188861222,-#_b5deded04545a234929b41f7ca36e34bp@chr1:188861179..188861222, -
1.48e-40FFCP PHASE2:Hg19::chr8:129431377..129431384,-#_b5deded04545a234929b41f7ca36e34bp@chr8:129431377..129431384, -
1.48e-40FFCP PHASE1:Hg19::chr20:2779199..2779205,-#_b5deded04545a234929b41f7ca36e34bp13@CPXM1
1.48e-40FFCP PHASE1:Hg19::chr17:9716257..9716264,-#_b5deded04545a234929b41f7ca36e34bp@chr17:9716257..9716264, -
1.48e-40FFCP PHASE2:Hg19::chr3:87647430..87647437,-#_b5deded04545a234929b41f7ca36e34bp@chr3:87647430..87647437, -
1.48e-40FFCP PHASE1:Hg19::chr15:91143571..91143582,+#_b5deded04545a234929b41f7ca36e34bp@chr15:91143571..91143582, +
1.48e-40FFCP PHASE2:Hg19::chr17:13574618..13574636,-#_b5deded04545a234929b41f7ca36e34bp@chr17:13574618..13574636, -
1.48e-40FFCP PHASE1:Hg19::chr7:158237237..158237241,+#_b5deded04545a234929b41f7ca36e34bp@chr7:158237237..158237241, +
1.48e-40FFCP PHASE1:Hg19::chr1:188857554..188857562,-#_b5deded04545a234929b41f7ca36e34bp@chr1:188857554..188857562, -
1.48e-40FFCP PHASE1:Hg19::chr6:22113639..22113643,+#_b5deded04545a234929b41f7ca36e34bp@chr6:22113639..22113643, +
1.48e-40FFCP PHASE1:Hg19::chr18:67563022..67563032,-#_b5deded04545a234929b41f7ca36e34bp@chr18:67563022..67563032, -
1.48e-40FFCP PHASE1:Hg19::chrX:48056224..48056233,-#_b5deded04545a234929b41f7ca36e34bp1@SSX5
1.48e-40FFCP PHASE1:Hg19::chr2:75145327..75145329,+#_b5deded04545a234929b41f7ca36e34bp9@ENST00000435984
1.48e-40FFCP PHASE2:Hg19::chr7:63539651..63539654,+#_b5deded04545a234929b41f7ca36e34bp1@ENST00000430271
1.48e-40FFCP PHASE2:Hg19::chr1:188856567..188856573,-#_b5deded04545a234929b41f7ca36e34bp2@ENST00000414765
1.48e-40FFCP PHASE1:Hg19::chr7:68735132..68735135,+#_b5deded04545a234929b41f7ca36e34bp@chr7:68735132..68735135, +
1.48e-40FFCP PHASE1:Hg19::chr1:33886874..33886882,-#_b5deded04545a234929b41f7ca36e34bp@chr1:33886874..33886882, -
1.48e-40FFCP PHASE2:Hg19::chr3:189838995..189839000,-#_b5deded04545a234929b41f7ca36e34bp31@LEPREL1
1.48e-40FFCP PHASE2:Hg19::chr6:137314390..137314394,-#_b5deded04545a234929b41f7ca36e34bp1@ENST00000418699, p1@ENST00000432330
1.48e-40FFCP PHASE2:Hg19::chr17:63511856..63511858,-#_b5deded04545a234929b41f7ca36e34bp@chr17:63511856..63511858, -
1.48e-40FFCP PHASE2:Hg19::chr18:61368086..61368120,+#_b5deded04545a234929b41f7ca36e34bp@chr18:61368086..61368120, +
1.48e-40FFCP PHASE1:Hg19::chr1:234565260..234565271,-#_b5deded04545a234929b41f7ca36e34bp@chr1:234565260..234565271, -
1.48e-40FFCP PHASE1:Hg19::chr13:109644678..109644725,+#_b5deded04545a234929b41f7ca36e34bp@chr13:109644678..109644725, +
1.48e-40FFCP PHASE1:Hg19::chr3:63805044..63805054,+#_b5deded04545a234929b41f7ca36e34bp1@C3orf49
1.48e-40FFCP PHASE2:Hg19::chr1:188874798..188874820,+#_b5deded04545a234929b41f7ca36e34bp1@ENST00000445072
1.48e-40FFCP PHASE2:Hg19::chr9:138393225..138393257,+#_b5deded04545a234929b41f7ca36e34bp@chr9:138393225..138393257, +
1.48e-40FFCP PHASE2:Hg19::chr7:68735214..68735224,+#_b5deded04545a234929b41f7ca36e34bp@chr7:68735214..68735224, +
1.48e-40FFCP PHASE2:Hg19::chr6:166575975..166575983,-#_b5deded04545a234929b41f7ca36e34bp@chr6:166575975..166575983, -
1.48e-40FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_b5deded04545a234929b41f7ca36e34bp12@CLEC16A
1.48e-40FFCP PHASE1:Hg19::chr20:2779236..2779242,-#_b5deded04545a234929b41f7ca36e34bp12@CPXM1
1.48e-40FFCP PHASE1:Hg19::chr1:188856517..188856523,-#_b5deded04545a234929b41f7ca36e34bp1@ENST00000414765
1.48e-40FFCP PHASE1:Hg19::chr10:101690855..101690861,-#_b5deded04545a234929b41f7ca36e34bp14@DNMBP
1.48e-40FFCP PHASE2:Hg19::chr20:2779140..2779150,-#_b5deded04545a234929b41f7ca36e34bp9@CPXM1
1.48e-40FFCP PHASE2:Hg19::chr7:151169194..151169198,-#_b5deded04545a234929b41f7ca36e34bp17@RHEB
1.48e-40FFCP PHASE1:Hg19::chr7:158242968..158242975,+#_b5deded04545a234929b41f7ca36e34bp@chr7:158242968..158242975, +
1.48e-40FFCP PHASE1:Hg19::chr1:188861179..188861222,-#_b5deded04545a234929b41f7ca36e34bp@chr1:188861179..188861222, -
1.48e-40FFCP PHASE2:Hg19::chr14:88452908..88452916,-#_b5deded04545a234929b41f7ca36e34bp@chr14:88452908..88452916, -
1.48e-40FFCP PHASE1:Hg19::chr3:26426173..26426176,+#_b5deded04545a234929b41f7ca36e34bp@chr3:26426173..26426176, +
1.48e-40FFCP PHASE2:Hg19::chr7:68735026..68735050,+#_b5deded04545a234929b41f7ca36e34bp@chr7:68735026..68735050, +
1.48e-40FFCP PHASE2:Hg19::chr1:188856590..188856595,-#_b5deded04545a234929b41f7ca36e34bp4@ENST00000414765
1.48e-40FFCP PHASE1:Hg19::chr7:68735137..68735150,+#_b5deded04545a234929b41f7ca36e34bp@chr7:68735137..68735150, +
1.48e-40FFCP PHASE2:Hg19::chr6:138060034..138060045,-#_b5deded04545a234929b41f7ca36e34bp1@ENST00000411615, p1@ENST00000419220
1.48e-40FFCP PHASE1:Hg19::chr1:68927028..68927036,-#_b5deded04545a234929b41f7ca36e34bp@chr1:68927028..68927036, -
1.48e-40FFCP PHASE1:Hg19::chr16:3332452..3332454,+#_b5deded04545a234929b41f7ca36e34bp@chr16:3332452..3332454, +
1.48e-40FFCP PHASE2:Hg19::chr3:63804973..63804980,+#_b5deded04545a234929b41f7ca36e34bp3@C3orf49
1.48e-40FFCP PHASE2:Hg19::chr2:115929667..115929677,+#_b5deded04545a234929b41f7ca36e34bp@chr2:115929667..115929677, +
1.48e-40FFCP PHASE1:Hg19::chr3:87647430..87647437,-#_b5deded04545a234929b41f7ca36e34bp@chr3:87647430..87647437, -

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