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{{DOID
{{DOID
|id=DOID:3904
|alt_id=
|name=bronchogenic carcinoma
|namespace=disease_ontology
|def=
|xref=MSH:D002283;;NCI:C35875;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:254622008;;SNOMEDCT_2010_1_31:269561006;;SNOMEDCT_2010_1_31:363493006;;UMLS_CUI:C0007121
|is_a=DOID:1325
|synonym="BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008];;"bronchial cancer" EXACT [CSP2005:2017-5516];;"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875];;"bronchogenic carcinoma" EXACT [CSP2005:2017-6052];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3904
|is_a=DOID:1325
|is_obsolete=
|located_in=
|located_in=
|name=bronchogenic carcinoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008];;"bronchial cancer" EXACT [CSP2005:2017-5516];;"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875];;"bronchogenic carcinoma" EXACT [CSP2005:2017-6052];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]
|union_of=
|xref=MSH:D002283;;NCI:C35875;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:254622008;;SNOMEDCT_2010_1_31:269561006;;SNOMEDCT_2010_1_31:363493006;;UMLS_CUI:C0007121
}}
}}

Latest revision as of 16:51, 12 September 2014

Name:bronchogenic carcinoma
Namespace:FANTOM
Xrefs:
links:

MSH:D002283
NCI:C35875
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:254622008
SNOMEDCT_2010_1_31:269561006
SNOMEDCT_2010_1_31:363493006

UMLS_CUI:C0007121
Synonyms: "BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008]
"bronchial cancer" EXACT [CSP2005:2017-5516]
"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875]
"bronchogenic carcinoma" EXACT [CSP2005:2017-6052]
"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:1325(bronchus cancer)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3904 (bronchogenic carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.76e-57FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399533..45399540, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399294..45399301, +
4.76e-57FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405393..45405412, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399263..45399274, +
4.76e-57FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:125378873..125378876, +
4.76e-57FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405332..45405343, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399245..45399258, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399533..45399540, +
4.76e-57FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405393..45405412, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399294..45399301, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399263..45399274, +
4.76e-57FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:125378873..125378876, +
4.76e-57FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405332..45405343, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399245..45399258, +
1.49e-38FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786620..73786627, +
1.49e-38FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399724..45399733, +
1.49e-38FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786593..73786601, +
1.49e-38FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399422..45399430, +
1.49e-38FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786620..73786627, +
1.49e-38FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_3efaffa271a7215afa8f9beebeea155ap@chr8:40525350..40525354, -
1.49e-38FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399724..45399733, +
1.49e-38FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786593..73786601, +
1.49e-38FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399422..45399430, +
1.49e-38FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_3efaffa271a7215afa8f9beebeea155ap@chr8:40525350..40525354, -
1.8e-38FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_a89e065dbffaa49eaeb69500b6779beep@chr18:10085554..10085562, +
1.8e-38FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_a89e065dbffaa49eaeb69500b6779beep@chr18:10085554..10085562, +
2.18e-38FFCP PHASE1:Hg19::chr2:233352641..233352675,+#_2f810072074677b83937c1f2a5e1735bp@chr2:233352641..233352675, +
2.18e-38FFCP PHASE2:Hg19::chr2:233352641..233352675,+#_2f810072074677b83937c1f2a5e1735bp@chr2:233352641..233352675, +
1.14e-32FFCP PHASE2:Hg19::chr14:106916169..106916203,+#_0f3f47edfc78ae20205a26a9a4185251p@chr14:106916169..106916203, +
1.14e-32FFCP PHASE1:Hg19::chr14:106916169..106916203,+#_0f3f47edfc78ae20205a26a9a4185251p@chr14:106916169..106916203, +
1.78e-29FFCP PHASE2:Hg19::chr16:13010571..13010578,+#_39df5efeecaef77fad20cc2f4b578036p@chr16:13010571..13010578, +
1.78e-29FFCP PHASE1:Hg19::chr7:95776285..95776292,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:95776285..95776292, -
1.78e-29FFCP PHASE1:Hg19::chr19:46763326..46763349,+#_39df5efeecaef77fad20cc2f4b578036p@chr19:46763326..46763349, +
1.78e-29FFCP PHASE2:Hg19::chr17:63528638..63528642,+#_39df5efeecaef77fad20cc2f4b578036p@chr17:63528638..63528642, +
1.78e-29FFCP PHASE1:Hg19::chr9:17454052..17454060,+#_39df5efeecaef77fad20cc2f4b578036p@chr9:17454052..17454060, +
1.78e-29FFCP PHASE1:Hg19::chr16:13010571..13010578,+#_39df5efeecaef77fad20cc2f4b578036p@chr16:13010571..13010578, +
1.78e-29FFCP PHASE1:Hg19::chr6:141460346..141460355,+#_39df5efeecaef77fad20cc2f4b578036p@chr6:141460346..141460355, +
1.78e-29FFCP PHASE2:Hg19::chr2:202413051..202413061,-#_39df5efeecaef77fad20cc2f4b578036p@chr2:202413051..202413061, -
1.78e-29FFCP PHASE1:Hg19::chrX:10852011..10852021,-#_39df5efeecaef77fad20cc2f4b578036p27@MID1
1.78e-29FFCP PHASE1:Hg19::chr4:41750020..41750029,-#_39df5efeecaef77fad20cc2f4b578036p9@PHOX2B
1.78e-29FFCP PHASE1:Hg19::chr3:95401928..95401936,-#_39df5efeecaef77fad20cc2f4b578036p3@ENST00000494840, p3@uc003dro.1
1.78e-29FFCP PHASE1:Hg19::chr17:70940275..70940283,+#_39df5efeecaef77fad20cc2f4b578036p@chr17:70940275..70940283, +
1.78e-29FFCP PHASE1:Hg19::chr12:84664662..84664670,+#_39df5efeecaef77fad20cc2f4b578036p3@ENST00000547882
1.78e-29FFCP PHASE2:Hg19::chr20:45418126..45418131,-#_39df5efeecaef77fad20cc2f4b578036p@chr20:45418126..45418131, -
1.78e-29FFCP PHASE2:Hg19::chr15:96959907..96959930,+#_39df5efeecaef77fad20cc2f4b578036p@chr15:96959907..96959930, +
1.78e-29FFCP PHASE2:Hg19::chr8:82275651..82275662,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:82275651..82275662, +
1.78e-29FFCP PHASE2:Hg19::chr2:97626550..97626562,-#_39df5efeecaef77fad20cc2f4b578036p@chr2:97626550..97626562, -
1.78e-29FFCP PHASE1:Hg19::chr14:57127856..57127863,+#_39df5efeecaef77fad20cc2f4b578036p@chr14:57127856..57127863, +
1.78e-29FFCP PHASE2:Hg19::chr2:138685510..138685520,-#_39df5efeecaef77fad20cc2f4b578036p@chr2:138685510..138685520, -
1.78e-29FFCP PHASE1:Hg19::chr2:8803669..8803680,-#_39df5efeecaef77fad20cc2f4b578036p@chr2:8803669..8803680, -
1.78e-29FFCP PHASE1:Hg19::chr1:199134722..199134729,+#_39df5efeecaef77fad20cc2f4b578036p@chr1:199134722..199134729, +
1.78e-29FFCP PHASE2:Hg19::chr8:98070371..98070384,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98070371..98070384, -
1.78e-29FFCP PHASE2:Hg19::chr6:154858754..154858762,+#_39df5efeecaef77fad20cc2f4b578036p@chr6:154858754..154858762, +
1.78e-29FFCP PHASE2:Hg19::chr5:28571958..28571968,-#_39df5efeecaef77fad20cc2f4b578036p@chr5:28571958..28571968, -
1.78e-29FFCP PHASE2:Hg19::chr16:66088105..66088108,-#_39df5efeecaef77fad20cc2f4b578036p@chr16:66088105..66088108, -
1.78e-29FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_39df5efeecaef77fad20cc2f4b578036p1@ENST00000418699, p1@ENST00000432330
1.78e-29FFCP PHASE1:Hg19::chr14:60958049..60958051,-#_39df5efeecaef77fad20cc2f4b578036p@chr14:60958049..60958051, -
1.78e-29FFCP PHASE2:Hg19::chr2:192805239..192805246,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:192805239..192805246, +
1.78e-29FFCP PHASE2:Hg19::chr10:129703430..129703445,+#_39df5efeecaef77fad20cc2f4b578036p@chr10:129703430..129703445, +
1.78e-29FFCP PHASE1:Hg19::chr3:86703154..86703166,-#_39df5efeecaef77fad20cc2f4b578036p@chr3:86703154..86703166, -
1.78e-29FFCP PHASE1:Hg19::chr17:63511856..63511858,-#_39df5efeecaef77fad20cc2f4b578036p@chr17:63511856..63511858, -
1.78e-29FFCP PHASE1:Hg19::chr12:79756349..79756364,-#_39df5efeecaef77fad20cc2f4b578036p@chr12:79756349..79756364, -
1.78e-29FFCP PHASE1:Hg19::chr10:29213480..29213487,-#_39df5efeecaef77fad20cc2f4b578036p@chr10:29213480..29213487, -
1.78e-29FFCP PHASE1:Hg19::chr8:98108435..98108438,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98108435..98108438, -
1.78e-29FFCP PHASE1:Hg19::chr1:81686906..81686911,+#_39df5efeecaef77fad20cc2f4b578036p@chr1:81686906..81686911, +
1.78e-29FFCP PHASE1:Hg19::chr16:7354636..7354645,-#_39df5efeecaef77fad20cc2f4b578036p@chr16:7354636..7354645, -
1.78e-29FFCP PHASE2:Hg19::chr8:72938203..72938230,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:72938203..72938230, +
1.78e-29FFCP PHASE2:Hg19::chr6:125547084..125547089,+#_39df5efeecaef77fad20cc2f4b578036p@chr6:125547084..125547089, +
1.78e-29FFCP PHASE2:Hg19::chr2:97625602..97625628,-#_39df5efeecaef77fad20cc2f4b578036p@chr2:97625602..97625628, -
1.78e-29FFCP PHASE2:Hg19::chr2:222160774..222160804,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:222160774..222160804, +
1.78e-29FFCP PHASE2:Hg19::chr19:54024499..54024503,+#_39df5efeecaef77fad20cc2f4b578036p48@ZNF331
1.78e-29FFCP PHASE1:Hg19::chr4:139019174..139019198,-#_39df5efeecaef77fad20cc2f4b578036p@chr4:139019174..139019198, -
1.78e-29FFCP PHASE2:Hg19::chr8:97972117..97972120,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:97972117..97972120, -
1.78e-29FFCP PHASE1:Hg19::chr8:116215335..116215378,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:116215335..116215378, +
1.78e-29FFCP PHASE1:Hg19::chr2:222160741..222160750,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:222160741..222160750, +
1.78e-29FFCP PHASE1:Hg19::chr18:10085817..10085825,+#_39df5efeecaef77fad20cc2f4b578036p@chr18:10085817..10085825, +
1.78e-29FFCP PHASE1:Hg19::chr14:60194070..60194083,-#_39df5efeecaef77fad20cc2f4b578036p25@RTN1
1.78e-29FFCP PHASE2:Hg19::chr7:79840323..79840338,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:79840323..79840338, +
1.78e-29FFCP PHASE2:Hg19::chr7:111234799..111234807,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:111234799..111234807, -
1.78e-29FFCP PHASE1:Hg19::chr13:76563913..76563916,+#_39df5efeecaef77fad20cc2f4b578036p@chr13:76563913..76563916, +
1.78e-29FFCP PHASE2:Hg19::chr12:84664687..84664694,+#_39df5efeecaef77fad20cc2f4b578036p4@ENST00000547882
1.78e-29FFCP PHASE1:Hg19::chr7:39018314..39018323,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:39018314..39018323, +
1.78e-29FFCP PHASE1:Hg19::chr4:185426203..185426209,-#_39df5efeecaef77fad20cc2f4b578036p@chr4:185426203..185426209, -
1.78e-29FFCP PHASE1:Hg19::chr13:95133382..95133389,-#_39df5efeecaef77fad20cc2f4b578036p@chr13:95133382..95133389, -
1.78e-29FFCP PHASE2:Hg19::chr8:39970826..39970832,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:39970826..39970832, +
1.78e-29FFCP PHASE2:Hg19::chr15:71685918..71685922,-#_39df5efeecaef77fad20cc2f4b578036p@chr15:71685918..71685922, -
1.78e-29FFCP PHASE1:Hg19::chr8:98065877..98065881,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98065877..98065881, -
1.78e-29FFCP PHASE2:Hg19::chr8:57525935..57525942,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:57525935..57525942, +
1.78e-29FFCP PHASE2:Hg19::chr13:26155734..26155742,+#_39df5efeecaef77fad20cc2f4b578036p@chr13:26155734..26155742, +
1.78e-29FFCP PHASE1:Hg19::chr7:84651827..84651832,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:84651827..84651832, -
1.78e-29FFCP PHASE1:Hg19::chr7:120383546..120383560,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:120383546..120383560, +
1.78e-29FFCP PHASE1:Hg19::chr4:107955476..107955508,-#_39df5efeecaef77fad20cc2f4b578036p@chr4:107955476..107955508, -
1.78e-29FFCP PHASE2:Hg19::chr7:26590563..26590574,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:26590563..26590574, -
1.78e-29FFCP PHASE2:Hg19::chr2:135119636..135119642,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:135119636..135119642, +
1.78e-29FFCP PHASE1:Hg19::chr17:13574618..13574636,-#_39df5efeecaef77fad20cc2f4b578036p@chr17:13574618..13574636, -
1.78e-29FFCP PHASE2:Hg19::chr6:140771120..140771128,+#_39df5efeecaef77fad20cc2f4b578036p@chr6:140771120..140771128, +
1.78e-29FFCP PHASE2:Hg19::chr2:234862436..234862439,+#_39df5efeecaef77fad20cc2f4b578036p16@TRPM8
1.78e-29FFCP PHASE2:Hg19::chr1:100110807..100110818,+#_39df5efeecaef77fad20cc2f4b578036p@chr1:100110807..100110818, +
1.78e-29FFCP PHASE1:Hg19::chr2:220594710..220594720,+#_39df5efeecaef77fad20cc2f4b578036p3@ENST00000442416
1.78e-29FFCP PHASE1:Hg19::chr2:103235329..103235342,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:103235329..103235342, +

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