FF:11549-120C1: Difference between revisions

Latest revision as of 18:08, 4 June 2020

Name:	Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11350
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	umbilical cord
dev stage	fetus
sex	female
age	?
cell type	mesenchymal stem cell
cell line	NA
company	CET
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005087

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11350		CAGE		DRX008365		DRR009237

Accession ID Hg19

Library id		BAM		CTSS
CNhs11350		DRZ000662		DRZ002047

Accession ID Hg38

Library id		BAM		CTSS
CNhs11350		DRZ012012		DRZ013397

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005087

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10008.ATGTCA		sRNA-Seq		DRX037120		DRR041486

Accession ID Hg19

Library id		BAM		CTSS
SRhi10008.ATGTCA		DRZ007128

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0722
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0634
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.477
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.13
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0577
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.387
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0879
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0271
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0933
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.159
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0151
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.158
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.242
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.662
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.428
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.428
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.499
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.705
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.684
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11350

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.467
MA0003.1	MA0003.1	0.936
MA0004.1	MA0004.1	0.788
MA0006.1	MA0006.1	0.143
MA0007.1	MA0007.1	0.594
MA0009.1	MA0009.1	0.0458
MA0014.1	MA0014.1	0.507
MA0017.1	MA0017.1	0.181
MA0018.2	MA0018.2	9.64296e-6
MA0019.1	MA0019.1	0.242
MA0024.1	MA0024.1	0.00831
MA0025.1	MA0025.1	0.0017
MA0027.1	MA0027.1	0.509
MA0028.1	MA0028.1	0.734
MA0029.1	MA0029.1	0.185
MA0030.1	MA0030.1	0.167
MA0031.1	MA0031.1	0.0263
MA0035.2	MA0035.2	0.234
MA0038.1	MA0038.1	0.39
MA0039.2	MA0039.2	0.517
MA0040.1	MA0040.1	0.563
MA0041.1	MA0041.1	0.374
MA0042.1	MA0042.1	0.628
MA0043.1	MA0043.1	0.00309
MA0046.1	MA0046.1	0.709
MA0047.2	MA0047.2	0.42
MA0048.1	MA0048.1	0.14
MA0050.1	MA0050.1	3.61559e-5
MA0051.1	MA0051.1	0.033
MA0052.1	MA0052.1	0.205
MA0055.1	MA0055.1	0.174
MA0057.1	MA0057.1	0.149
MA0058.1	MA0058.1	0.897
MA0059.1	MA0059.1	0.621
MA0060.1	MA0060.1	2.93026e-4
MA0061.1	MA0061.1	0.0943
MA0062.2	MA0062.2	0.00603
MA0065.2	MA0065.2	0.154
MA0066.1	MA0066.1	0.477
MA0067.1	MA0067.1	0.0184
MA0068.1	MA0068.1	0.0421
MA0069.1	MA0069.1	0.238
MA0070.1	MA0070.1	0.499
MA0071.1	MA0071.1	0.655
MA0072.1	MA0072.1	0.811
MA0073.1	MA0073.1	0.572
MA0074.1	MA0074.1	0.903
MA0076.1	MA0076.1	0.287
MA0077.1	MA0077.1	0.992
MA0078.1	MA0078.1	0.692
MA0079.2	MA0079.2	0.914
MA0080.2	MA0080.2	7.5718e-9
MA0081.1	MA0081.1	0.0192
MA0083.1	MA0083.1	0.00197
MA0084.1	MA0084.1	0.123
MA0087.1	MA0087.1	0.904
MA0088.1	MA0088.1	0.392
MA0090.1	MA0090.1	2.00869e-5
MA0091.1	MA0091.1	0.414
MA0092.1	MA0092.1	0.409
MA0093.1	MA0093.1	0.967
MA0099.2	MA0099.2	0.266
MA0100.1	MA0100.1	0.563
MA0101.1	MA0101.1	0.00751
MA0102.2	MA0102.2	5.62093e-4
MA0103.1	MA0103.1	0.0148
MA0104.2	MA0104.2	0.0286
MA0105.1	MA0105.1	0.678
MA0106.1	MA0106.1	0.296
MA0107.1	MA0107.1	0.0167
MA0108.2	MA0108.2	0.414
MA0111.1	MA0111.1	0.0607
MA0112.2	MA0112.2	0.0484
MA0113.1	MA0113.1	0.602
MA0114.1	MA0114.1	0.0408
MA0115.1	MA0115.1	0.047
MA0116.1	MA0116.1	0.643
MA0117.1	MA0117.1	0.358
MA0119.1	MA0119.1	0.229
MA0122.1	MA0122.1	0.399
MA0124.1	MA0124.1	0.995
MA0125.1	MA0125.1	0.732
MA0131.1	MA0131.1	0.677
MA0135.1	MA0135.1	0.435
MA0136.1	MA0136.1	6.71596e-9
MA0137.2	MA0137.2	0.044
MA0138.2	MA0138.2	0.607
MA0139.1	MA0139.1	0.541
MA0140.1	MA0140.1	0.72
MA0141.1	MA0141.1	0.45
MA0142.1	MA0142.1	0.14
MA0143.1	MA0143.1	0.565
MA0144.1	MA0144.1	0.388
MA0145.1	MA0145.1	0.707
MA0146.1	MA0146.1	0.772
MA0147.1	MA0147.1	0.192
MA0148.1	MA0148.1	0.624
MA0149.1	MA0149.1	0.726
MA0150.1	MA0150.1	0.448
MA0152.1	MA0152.1	0.0619
MA0153.1	MA0153.1	0.563
MA0154.1	MA0154.1	0.408
MA0155.1	MA0155.1	0.858
MA0156.1	MA0156.1	2.58901e-7
MA0157.1	MA0157.1	0.124
MA0159.1	MA0159.1	0.491
MA0160.1	MA0160.1	0.0311
MA0162.1	MA0162.1	0.0194
MA0163.1	MA0163.1	0.332
MA0164.1	MA0164.1	0.837
MA0258.1	MA0258.1	0.575
MA0259.1	MA0259.1	0.728

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11350

Novel motif	Logo	P-value
1	1	0.653
10	10	0.438
100	100	0.661
101	101	0.528
102	102	0.261
103	103	0.372
104	104	0.895
105	105	0.55
106	106	0.549
107	107	0.317
108	108	0.796
109	109	0.473
11	11	0.761
110	110	0.946
111	111	0.675
112	112	0.448
113	113	8.90759e-4
114	114	0.343
115	115	0.397
116	116	0.412
117	117	0.787
118	118	0.719
119	119	0.865
12	12	0.133
120	120	0.204
121	121	0.317
122	122	0.333
123	123	4.06178e-5
124	124	0.136
125	125	0.672
126	126	0.511
127	127	0.559
128	128	0.432
129	129	0.612
13	13	0.551
130	130	0.237
131	131	0.749
132	132	0.523
133	133	0.25
134	134	0.161
135	135	0.799
136	136	0.692
137	137	0.572
138	138	0.262
139	139	0.584
14	14	0.113
140	140	0.949
141	141	0.212
142	142	0.342
143	143	0.844
144	144	0.748
145	145	0.491
146	146	0.863
147	147	0.254
148	148	0.436
149	149	0.0141
15	15	0.752
150	150	0.957
151	151	0.719
152	152	0.1
153	153	0.536
154	154	0.741
155	155	0.0188
156	156	0.667
157	157	0.0641
158	158	0.0155
159	159	0.531
16	16	0.0212
160	160	0.863
161	161	0.434
162	162	0.892
163	163	0.766
164	164	0.411
165	165	0.629
166	166	0.0525
167	167	0.612
168	168	0.304
169	169	0.0323
17	17	0.962
18	18	0.0576
19	19	0.0435
2	2	0.666
20	20	0.882
21	21	0.0319
22	22	0.214
23	23	0.258
24	24	0.484
25	25	0.524
26	26	0.927
27	27	0.73
28	28	0.342
29	29	0.332
3	3	0.689
30	30	0.509
31	31	0.362
32	32	3.49966e-15
33	33	0.339
34	34	0.615
35	35	0.0613
36	36	0.0895
37	37	0.07
38	38	0.236
39	39	0.676
4	4	0.638
40	40	0.79
41	41	0.906
42	42	0.776
43	43	0.739
44	44	0.335
45	45	0.693
46	46	0.806
47	47	0.855
48	48	0.873
49	49	0.768
5	5	0.711
50	50	0.751
51	51	0.254
52	52	0.399
53	53	0.0295
54	54	0.932
55	55	0.277
56	56	0.821
57	57	0.614
58	58	0.191
59	59	0.0733
6	6	0.429
60	60	0.254
61	61	0.436
62	62	0.996
63	63	0.869
64	64	0.469
65	65	0.967
66	66	0.928
67	67	0.144
68	68	0.724
69	69	0.305
7	7	0.687
70	70	0.529
71	71	0.22
72	72	0.363
73	73	0.0308
74	74	0.536
75	75	0.172
76	76	0.583
77	77	0.0727
78	78	0.889
79	79	0.0605
8	8	0.325
80	80	0.975
81	81	0.907
82	82	0.8
83	83	0.602
84	84	0.0896
85	85	0.371
86	86	0.977
87	87	0.0722
88	88	0.514
89	89	0.0972
9	9	0.981
90	90	0.129
91	91	0.738
92	92	0.37
93	93	0.68
94	94	0.875
95	95	0.619
96	96	0.792
97	97	0.37
98	98	0.152
99	99	0.142

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11350

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000117 human mesenchymal stem cell of umbilical cord blood sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000081 (blood cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002569 (mesenchymal stem cell of umbilical cord)

UBERON: Anatomy
0002331 (umbilical cord)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0003104 (mesenchyme)
0010317 (germ layer / neural crest derived structure)
0003422 (mesenchyme of umbilical cord)
0009142 (entire embryonic mesenchyme)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000117 (human mesenchymal stem cell of umbilical cord blood sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002331,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0005291,UBERON:0003104,UBERON:0006598,UBERON:0002532,UBERON:0000358,UBERON:0003422,UBERON:0000307,UBERON:0009142,UBERON:0003081,UBERON:0000091,UBERON:0000087,UBERON:0006603,UBERON:0007806,UBERON:0008780,UBERON:0005728
+|DRA_sample_Accession=CAGE@SAMD00005087
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000081,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0002569
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005087
+|accession_numbers=CAGE;DRX008365;DRR009237;DRZ000662;DRZ002047;DRZ012012;DRZ013397
+|accession_numbers_RNASeq=sRNA-Seq;DRX037120;DRR041486;DRZ007128
+|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000081,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000117
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:30433396..30433414,-!p1@FOXS1!1.72!51.28!FOXS1;;chr2:45236540..45236577,-!p1@SIX2!1.68!46.97!SIX2;;chr6:126070769..126070801,+!p1@HEY2!1.59!43.13!HEY2;;chr11:46299199..46299233,+!p1@CREB3L1!1.50!153.12!CREB3L1;;chr14:61116183..61116208,-!p1@SIX1!1.45!99.92!SIX1;;chr6:19837592..19837621,+!p1@ID4!1.38!136.11!ID4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.33!20.37!ZBED1;;chr1:170632285..170632309,+!p1@PRRX1!1.31!21.81!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.29!25.16!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!1.23!39.30!FOXC2;;chr7:35293685..35293718,-!p1@TBX20!1.21!15.10!TBX20;;chr11:46299539..46299620,+!p2@CREB3L1!1.20!24.92!CREB3L1;;chr1:40105299..40105326,-!p1@HEYL!1.17!13.66!HEYL;;chr1:170632959..170632987,+!p4@PRRX1!1.12!13.42!PRRX1;;chr2:45236579..45236596,-!p2@SIX2!1.09!11.26!SIX2;;chr7:19157248..19157268,-!p1@TWIST1!1.07!29.95!TWIST1;;chr4:81118647..81118666,+!p1@PRDM8!1.07!14.38!PRDM8;;chr1:170633262..170633285,+!p3@PRRX1!1.06!11.98!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.06!10.54!PRRX1;;chr8:72756637..72756664,-!p3@MSC!1.05!11.74!MSC;;chr19:47523058..47523114,+!p1@NPAS1!1.04!10.06!NPAS1;;chr12:80085061..80085119,-!p6@PAWR!1.03!15.82!PAWR;;chr8:72756267..72756296,-!p4@MSC!1.02!14.14!MSC;;chr6:126070748..126070768,+!p2@HEY2!1.01!9.35!HEY2;;chr6:1389789..1389821,+!p1@FOXF2!0.98!11.98!FOXF2;;chr8:72756667..72756736,-!p2@MSC!0.97!13.18!MSC;;chr22:19748231..19748317,+!p1@TBX1!0.97!8.39!TBX1;;chr6:126102292..126102329,+!p3@NCOA7!0.95!26.84!NCOA7;;chr15:42749722..42749739,-!p2@ZFP106!0.95!14.38!ZFP106;;chr18:19749541..19749557,+!p1@GATA6!0.93!24.44!GATA6;;chr8:72756063..72756125,-!p1@MSC!0.93!15.58!MSC;;chr1:170632250..170632277,+!p7@PRRX1!0.93!7.43!PRRX1;;chr7:17338266..17338282,+!p1@AHR!0.92!81.95!AHR;;chr11:65686802..65686818,+!p6@DRAP1!0.92!12.94!DRAP1;;chr9:132427972..132428056,+!p1@PRRX2!0.91!9.35!PRRX2;;chr14:62162285..62162296,+!p3@HIF1A!0.90!37.86!HIF1A;;chr6:10415276..10415341,-!p2@TFAP2A!0.89!8.39!TFAP2A;;chr7:44143925..44143970,+!p1@AEBP1!0.88!156.95!AEBP1;;chr15:96869255..96869291,+!p6@NR2F2!0.88!12.46!NR2F2;;chr8:72756213..72756243,-!p5@MSC!0.85!7.91!MSC;;chr15:100106670..100106697,+!p4@MEF2A!0.84!10.06!MEF2A;;chr9:132427883..132427951,+!p2@PRRX2!0.84!5.99!PRRX2;;chr14:62162258..62162269,+!p2@HIF1A!0.83!60.15!HIF1A;;chr1:151032860..151032918,+!p1@MLLT11!0.81!69.97!MLLT11;;chr10:63809013..63809041,+!p3@ARID5B!0.80!31.63!ARID5B;;chr11:65686732..65686756,+!p2@DRAP1!0.80!24.20!DRAP1;;chr2:19558373..19558392,-!p1@OSR1!0.80!15.34!OSR1;;chr16:86600870..86600921,+!p2@FOXC2!0.80!5.27!FOXC2;;chr21:30671690..30671762,+!p2@BACH1!0.79!18.93!BACH1;;chr15:96874244..96874259,+!p5@NR2F2!0.79!13.18!NR2F2;;chr6:1610293..1610310,+!p1@FOXC1!0.79!9.11!FOXC1;;chr8:49833948..49833973,-!p2@SNAI2!0.78!35.22!SNAI2;;chr19:13134772..13134822,+!p2@NFIX!0.78!7.67!NFIX;;chr12:80085120..80085156,-!p14@PAWR!0.78!5.03!PAWR;;chr15:96874145..96874166,+!p7@NR2F2!0.77!9.82!NR2F2;;chr1:25256756..25256774,-!p1@RUNX3!0.76!9.35!RUNX3;;chr7:44143978..44143989,+!p2@AEBP1!0.76!9.11!AEBP1;;chr6:126102339..126102351,+!p12@NCOA7!0.76!4.79!NCOA7;;chr15:96876966..96877017,+!p12@NR2F2!0.75!6.95!NR2F2;;chr12:66218598..66218645,+!p2@HMGA2!0.74!23.00!HMGA2;;chr6:126240442..126240459,+!p4@NCOA7!0.74!5.99!NCOA7;;chr8:72756380..72756427,-!p8@MSC!0.74!4.55!MSC;;chr8:73921136..73921151,+!p2@TERF1!0.73!6.95!TERF1;;chr7:19157043..19157088,-!p2@TWIST1!0.72!11.50!TWIST1;;chr2:200323414..200323455,-!p1@SATB2!0.72!9.82!SATB2;;chr7:17338324..17338341,+!p3@AHR!0.71!15.34!AHR;;chr15:96869222..96869251,+!p18@NR2F2!0.71!5.03!NR2F2;;chr5:2751762..2751784,-!p1@IRX2!0.71!4.07!IRX2;;chr14:37131058..37131139,+!p1@PAX9!0.71!4.07!PAX9;;chr5:158526917..158526932,-!p1@EBF1!0.70!11.02!EBF1;;chr19:13136130..13136165,+!p6@NFIX!0.70!5.51!NFIX;;chr6:126240380..126240430,+!p2@NCOA7!0.69!11.26!NCOA7;;chr1:935467..935484,-!p1@HES4!0.68!18.93!HES4;;chr2:74229812..74229867,+!p1@TET3!0.68!10.54!TET3;;chr2:192015701..192015743,-!p1@STAT4!0.68!5.51!STAT4;;chr16:31076332..31076388,-!p3@ZNF668!0.68!3.83!ZNF668;;chr11:65687362..65687436,+!p3@DRAP1!0.67!18.93!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.67!13.18!AHRR;;chr17:59477233..59477263,+!p1@TBX2!0.67!12.70!TBX2;;chr3:141121847..141121868,+!p5@ZBTB38!0.67!5.99!ZBTB38;;chr14:61116168..61116180,-!p2@SIX1!0.67!4.31!SIX1;;chr2:121493425..121493474,+!p1@GLI2!0.66!8.63!GLI2;;chr7:137686763..137686784,-!p5@CREB3L2!0.66!6.71!CREB3L2;;chr6:10412600..10412637,-!p1@TFAP2A!0.66!6.47!TFAP2A;;chr5:158526459..158526481,-!p2@EBF1!0.66!5.03!EBF1;;chr11:65687243..65687276,+!p8@DRAP1!0.66!5.03!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.66!4.79!DRAP1;;chr2:45236829..45236840,-!p3@SIX2!0.66!3.59!SIX2;;chr5:72744594..72744609,-!p1@FOXD1!0.65!18.21!FOXD1;;chr15:96869292..96869320,+!p15@NR2F2!0.65!5.27!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.65!5.03!NR2F2;;chr8:49833978..49833996,-!p1@SNAI2!0.64!81.47!SNAI2;;chr1:170632723..170632739,+!p8@PRRX1!0.64!3.35!PRRX1;;chr2:5832508..5832524,+!p1@SOX11!0.64!3.35!SOX11;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.63!37.14!ZNF595;;chr11:65686952..65686975,+!p5@DRAP1!0.63!20.85!DRAP1;;chr2:191878874..191878938,-!p1@STAT1!0.62!207.99!STAT1;;chr9:35732647..35732678,+!p2@CREB3!0.61!20.13!CREB3;;chr6:126240463..126240489,+!p6@NCOA7!0.61!3.59!NCOA7;;chr2:45236648..45236659,-!p5@SIX2!0.61!3.12!SIX2;;chr2:85981107..85981120,+!p3@ATOH8!0.61!3.12!ATOH8;;chr19:45908292..45908374,-!p1@PPP1R13L!0.60!32.11!PPP1R13L;;chr12:66218255..66218304,+!p3@HMGA2!0.60!9.11!HMGA2;;chr5:72744445..72744466,-!p2@FOXD1!0.60!5.51!FOXD1;;chr19:53496768..53496799,-!p1@ZNF702P!0.60!5.03!ZNF702P;;chr15:96874216..96874236,+!p13@NR2F2!0.60!5.03!NR2F2;;chr19:31840130..31840160,-!p2@TSHZ3!0.60!5.03!TSHZ3;;chr5:139487608..139487663,+!p3@PURA!0.59!6.95!PURA;;chr2:185463247..185463263,+!p1@ZNF804A!0.59!5.75!ZNF804A;;chr2:200322654..200322707,-!p2@SATB2!0.59!4.55!SATB2;;chr7:44143997..44144008,+!p3@AEBP1!0.59!3.83!AEBP1;;chr8:25902876..25902936,-!p1@EBF2!0.59!2.88!EBF2;;chr8:72755987..72756002,-!p7@MSC!0.59!2.88!MSC;;chr22:19746969..19746987,+!p2@TBX1!0.59!2.88!TBX1;;chr3:147111198..147111225,+!p4@ZIC1!0.59!2.88!ZIC1;;chr11:46299443..46299459,+!p4@CREB3L1!0.59!2.88!CREB3L1;;chr12:66218836..66218888,+!p1@HMGA2!0.58!31.87!HMGA2;;chr12:80085255..80085284,-!p9@PAWR!0.57!4.31!PAWR;;chr8:72756023..72756055,-!p6@MSC!0.57!3.59!MSC;;chr18:19749386..19749404,+!p2@GATA6!0.56!4.07!GATA6;;chrX:66763856..66763896,+!p1@AR!0.56!4.07!AR;;chr1:170632477..170632506,+!p6@PRRX1!0.56!2.64!PRRX1;;chr5:139492456..139492489,+!p7@PURA!0.56!2.64!PURA;;chr11:46333934..46333963,+!p5@CREB3L1!0.56!2.64!CREB3L1;;chr1:935398..935465,-!p2@HES4!0.55!5.99!HES4;;chr11:12696071..12696086,+!p3@TEAD1!0.55!3.59!TEAD1;;chr5:72744562..72744573,-!p3@FOXD1!0.55!3.35!FOXD1;;chr1:23885981..23886002,-!p1@ID3!0.54!557.61!ID3;;chr14:62162224..62162254,+!p1@HIF1A!0.54!455.77!HIF1A;;chr7:150946015..150946070,-!p3@SMARCD3!0.54!6.23!SMARCD3;;chr2:191878812..191878823,-!p2@STAT1!0.54!3.35!STAT1;;chr10:63809106..63809127,+!p1@ARID5B!0.53!41.69!ARID5B;;chr3:147110055..147110129,-!p1@ZIC4!0.53!2.40!ZIC4;;chr3:147111231..147111281,+!p3@ZIC1!0.53!2.40!ZIC1;;chr15:96869165..96869183,+!p20@NR2F2!0.53!2.40!NR2F2;;chr15:96869206..96869220,+!p21@NR2F2!0.53!2.40!NR2F2;;chr19:13135582..13135600,+!p3@NFIX!0.53!2.40!NFIX;;chr7:1577899..1577943,+!p3@MAFK!0.53!2.40!MAFK;;chr7:35293665..35293680,-!p2@TBX20!0.53!2.40!TBX20;;chr1:119530493..119530572,-!p1@TBX15!0.53!2.40!TBX15;;chr1:119530706..119530736,-!p3@TBX15!0.53!2.40!TBX15;;chr12:80084303..80084332,-!p1@PAWR!0.52!17.25!PAWR;;chr12:96588368..96588394,+!p3@ELK3!0.52!7.43!ELK3;;chr12:57914286..57914304,-!p1@DDIT3!0.51!106.87!DDIT3;;chrX:106960180..106960197,-!p2@TSC22D3!0.51!10.54!TSC22D3;;chr10:63809134..63809145,+!p6@ARID5B!0.51!6.23!ARID5B;;chr19:56152332..56152347,+!p4@ZNF580!0.51!5.99!ZNF580;;chr12:66218443..66218461,+!p8@HMGA2!0.51!3.12!HMGA2;;chr9:4300050..4300118,-!p1@GLIS3!0.50!18.45!GLIS3;;chr1:151032739..151032748,+!p6@MLLT11!0.50!2.88!MLLT11;;chrX:85403445..85403479,+!p2@DACH2!0.50!2.16!DACH2;;chr2:100721881..100721904,-!p6@AFF3!0.50!2.16!AFF3;;chr8:72756194..72756208,-!p9@MSC!0.50!2.16!MSC;;chr8:93074803..93074845,-!p1@RUNX1T1!0.50!2.16!RUNX1T1;;chr15:100106705..100106716,+!p10@MEF2A!0.50!2.16!MEF2A;;chr16:86600458..86600461,+!p3@FOXC2!0.50!2.16!FOXC2;;chr2:46524537..46524553,+!p1@EPAS1!0.49!280.12!EPAS1;;chr15:96874012..96874042,+!p2@NR2F2!0.49!24.68!NR2F2;;chr18:19749517..19749531,+!p3@GATA6!0.49!4.31!GATA6;;chr11:46299186..46299195,+!p3@CREB3L1!0.49!2.40!CREB3L1;;chr12:124873357..124873401,-!p1@NCOR2!0.48!31.15!NCOR2;;chr1:151032782..151032801,+!p4@MLLT11!0.48!4.79!MLLT11;;chr1:151032922..151032951,+!p2@MLLT11!0.48!3.83!MLLT11;;chrX:66763815..66763854,+!p2@AR!0.48!2.88!AR;;chr3:185826286..185826318,-!p5@ETV5!0.48!2.40!ETV5;;chr16:73093174..73093209,-!p3@ZFHX3!0.47!2.88!ZFHX3;;chr18:56531584..56531646,+!p4@ZNF532!0.47!2.88!ZNF532;;chr15:83953397..83953425,-!p1@BNC1!0.47!2.40!BNC1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.46!188.58!TAX1BP3;;chr15:96873921..96873946,+!p1@NR2F2!0.46!73.33!NR2F2;;chrX:128657457..128657475,-!p1@SMARCA1!0.46!29.95!SMARCA1;;chr15:96875041..96875052,+!p17@NR2F2!0.46!3.12!NR2F2;;chr16:67881588..67881612,-!p2@CENPT!0.46!2.88!CENPT;;chr2:45236809..45236823,-!p4@SIX2!0.46!1.92!SIX2;;chr1:170632683..170632696,+!p12@PRRX1!0.46!1.92!PRRX1;;chr11:65480222..65480241,+!p4@KAT5!0.46!1.92!KAT5;;chr12:66218420..66218439,+!p12@HMGA2!0.46!1.92!HMGA2;;chr5:158524625..158524669,-!p6@EBF1!0.46!1.92!EBF1;;chr6:1612300..1612324,+!p3@FOXC1!0.46!1.92!FOXC1;;chr8:72756251..72756262,-!p12@MSC!0.46!1.92!MSC;;chr8:77593474..77593612,+!p1@ZFHX4!0.45!10.30!ZFHX4;;chr1:211433275..211433335,+!p2@RCOR3!0.45!7.19!RCOR3;;chr1:158979851..158979865,+!p5@IFI16!0.45!5.03!IFI16;;chrX:48900782..48900793,-!p3@TFE3!0.45!4.07!TFE3;;chr6:85474299..85474324,-!p1@TBX18!0.45!3.83!TBX18;;chr19:13134457..13134462,+!p5@NFIX!0.45!3.83!NFIX;;chr15:96881221..96881240,+!p19@NR2F2!0.45!2.64!NR2F2;;chr7:17338239..17338262,+!p2@AHR!0.44!17.97!AHR;;ch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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002569;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002331
+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor1.CNhs11350.11549-120C1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor1.CNhs11350.11549-120C1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor1.CNhs11350.11549-120C1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor1.CNhs11350.11549-120C1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor1.CNhs11350.11549-120C1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11549-120C1
-|is_a=EFO:0002091;;FF:0000002;;FF:0000117;;FF:0000210
+|is_a=EFO:0002091;;FF:0000117
+|is_obsolete=
+|library_id=CNhs11350
+|library_id_phase_based=2:CNhs11350
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11549
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.ATGTCA.11549
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11549
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.ATGTCA.11549
 |name=Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1
 |namespace=FANTOM5
@@ Line 42: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11350,LSID769,release014,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10008,,,
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 |rna_box=120
 |rna_catalog_number=N/A
@@ Line 56: / Line 82: @@
 |rna_tube_id=120C1
 |rna_weight_ug=55.9
+|rnaseq_library_id=SRhi10008.ATGTCA
 |sample_age=?
+|sample_category=primary cells
 |sample_cell_catalog=HMpC-500
 |sample_cell_line=
@@ Line 77: / Line 105: @@
 |sample_tissue=umbilical cord
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11549-120C1;search_select_hide=table117:FF:11549-120C1
 }}

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FF:11549-120C1: Difference between revisions

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Latest revision as of 18:08, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0