FF:11885-125D4: Difference between revisions

Latest revision as of 18:26, 4 June 2020

Name:	CD14+ monocytes - treated with lipopolysaccharide, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13545
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	21
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D5-6
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004980

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13545		CAGE		DRX008161		DRR009033

Accession ID Hg19

Library id		BAM		CTSS
CNhs13545		DRZ000458		DRZ001843

Accession ID Hg38

Library id		BAM		CTSS
CNhs13545		DRZ011808		DRZ013193

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.95
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.142
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.681
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.474
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0355
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.119
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.213
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.662
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.119
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.709
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.462
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0.548
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.46
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.453
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.783
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.164
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.462
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.203
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.507
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.061
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.355
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.72
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.213
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.836
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.681
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.509
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.934
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.595
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.213
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.652
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.412
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.994
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.425
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.725
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.938
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.29
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.62
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0892
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.29
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.666
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.213
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.355
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.507
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.548
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.412
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.119
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.213
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.355
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.213
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13545

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.12092e-7
MA0003.1	MA0003.1	0.792
MA0004.1	MA0004.1	0.421
MA0006.1	MA0006.1	0.971
MA0007.1	MA0007.1	0.874
MA0009.1	MA0009.1	0.618
MA0014.1	MA0014.1	0.694
MA0017.1	MA0017.1	0.214
MA0018.2	MA0018.2	0.171
MA0019.1	MA0019.1	0.577
MA0024.1	MA0024.1	0.0103
MA0025.1	MA0025.1	0.00111
MA0027.1	MA0027.1	0.924
MA0028.1	MA0028.1	0.268
MA0029.1	MA0029.1	0.102
MA0030.1	MA0030.1	0.194
MA0031.1	MA0031.1	0.324
MA0035.2	MA0035.2	0.291
MA0038.1	MA0038.1	0.779
MA0039.2	MA0039.2	0.952
MA0040.1	MA0040.1	0.537
MA0041.1	MA0041.1	0.331
MA0042.1	MA0042.1	0.896
MA0043.1	MA0043.1	7.5311e-9
MA0046.1	MA0046.1	0.0125
MA0047.2	MA0047.2	0.336
MA0048.1	MA0048.1	0.518
MA0050.1	MA0050.1	2.43811e-17
MA0051.1	MA0051.1	3.25306e-12
MA0052.1	MA0052.1	0.227
MA0055.1	MA0055.1	0.394
MA0057.1	MA0057.1	0.424
MA0058.1	MA0058.1	0.231
MA0059.1	MA0059.1	0.172
MA0060.1	MA0060.1	2.71443e-7
MA0061.1	MA0061.1	2.59844e-19
MA0062.2	MA0062.2	0.393
MA0065.2	MA0065.2	0.0312
MA0066.1	MA0066.1	0.0445
MA0067.1	MA0067.1	2.56984e-5
MA0068.1	MA0068.1	0.679
MA0069.1	MA0069.1	0.803
MA0070.1	MA0070.1	0.0168
MA0071.1	MA0071.1	0.589
MA0072.1	MA0072.1	0.611
MA0073.1	MA0073.1	0.468
MA0074.1	MA0074.1	0.145
MA0076.1	MA0076.1	0.255
MA0077.1	MA0077.1	0.271
MA0078.1	MA0078.1	0.651
MA0079.2	MA0079.2	0.159
MA0080.2	MA0080.2	2.33178e-11
MA0081.1	MA0081.1	5.93178e-4
MA0083.1	MA0083.1	0.522
MA0084.1	MA0084.1	0.687
MA0087.1	MA0087.1	0.806
MA0088.1	MA0088.1	0.722
MA0090.1	MA0090.1	0.378
MA0091.1	MA0091.1	0.861
MA0092.1	MA0092.1	0.338
MA0093.1	MA0093.1	0.454
MA0099.2	MA0099.2	8.88674e-41
MA0100.1	MA0100.1	0.894
MA0101.1	MA0101.1	5.93033e-24
MA0102.2	MA0102.2	1.15461e-9
MA0103.1	MA0103.1	0.0339
MA0104.2	MA0104.2	0.343
MA0105.1	MA0105.1	5.29727e-22
MA0106.1	MA0106.1	0.867
MA0107.1	MA0107.1	2.10004e-30
MA0108.2	MA0108.2	0.61
MA0111.1	MA0111.1	0.468
MA0112.2	MA0112.2	4.83706e-4
MA0113.1	MA0113.1	0.738
MA0114.1	MA0114.1	0.19
MA0115.1	MA0115.1	0.874
MA0116.1	MA0116.1	2.34836e-4
MA0117.1	MA0117.1	0.0629
MA0119.1	MA0119.1	0.132
MA0122.1	MA0122.1	0.494
MA0124.1	MA0124.1	0.321
MA0125.1	MA0125.1	0.204
MA0131.1	MA0131.1	0.528
MA0135.1	MA0135.1	0.29
MA0136.1	MA0136.1	1.2276e-12
MA0137.2	MA0137.2	0.0106
MA0138.2	MA0138.2	0.226
MA0139.1	MA0139.1	0.966
MA0140.1	MA0140.1	0.455
MA0141.1	MA0141.1	0.227
MA0142.1	MA0142.1	0.637
MA0143.1	MA0143.1	0.958
MA0144.1	MA0144.1	0.0206
MA0145.1	MA0145.1	0.543
MA0146.1	MA0146.1	0.57
MA0147.1	MA0147.1	0.437
MA0148.1	MA0148.1	0.775
MA0149.1	MA0149.1	0.244
MA0150.1	MA0150.1	3.89021e-21
MA0152.1	MA0152.1	0.917
MA0153.1	MA0153.1	0.00251
MA0154.1	MA0154.1	2.22767e-4
MA0155.1	MA0155.1	0.976
MA0156.1	MA0156.1	2.54418e-9
MA0157.1	MA0157.1	0.986
MA0159.1	MA0159.1	0.0365
MA0160.1	MA0160.1	0.138
MA0162.1	MA0162.1	0.934
MA0163.1	MA0163.1	9.94687e-9
MA0164.1	MA0164.1	0.616
MA0258.1	MA0258.1	0.0313
MA0259.1	MA0259.1	0.748

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13545

Novel motif	Logo	P-value
1	1	0.0912
10	10	0.0236
100	100	0.91
101	101	0.982
102	102	0.916
103	103	0.216
104	104	0.497
105	105	0.179
106	106	7.14567e-4
107	107	0.236
108	108	0.614
109	109	0.299
11	11	0.149
110	110	0.148
111	111	0.113
112	112	0.427
113	113	0.429
114	114	0.0317
115	115	0.156
116	116	0.885
117	117	0.0846
118	118	0.209
119	119	0.124
12	12	0.297
120	120	0.563
121	121	0.773
122	122	0.7
123	123	0.611
124	124	0.836
125	125	0.168
126	126	0.226
127	127	0.577
128	128	0.0706
129	129	0.328
13	13	0.0827
130	130	0.433
131	131	0.917
132	132	0.122
133	133	0.878
134	134	0.566
135	135	0.756
136	136	0.766
137	137	0.0344
138	138	0.506
139	139	0.112
14	14	0.546
140	140	0.601
141	141	0.261
142	142	0.235
143	143	0.0315
144	144	0.445
145	145	0.299
146	146	0.872
147	147	0.869
148	148	0.0108
149	149	0.97
15	15	0.156
150	150	0.31
151	151	0.602
152	152	0.541
153	153	0.802
154	154	0.795
155	155	0.853
156	156	0.7
157	157	0.863
158	158	0.0946
159	159	0.0737
16	16	0.313
160	160	0.404
161	161	0.41
162	162	0.253
163	163	0.158
164	164	0.168
165	165	0.18
166	166	0.999
167	167	0.281
168	168	0.0735
169	169	0.0193
17	17	0.274
18	18	0.111
19	19	0.555
2	2	0.398
20	20	0.173
21	21	0.81
22	22	0.346
23	23	0.0393
24	24	0.384
25	25	0.418
26	26	0.0591
27	27	0.565
28	28	0.308
29	29	0.243
3	3	0.12
30	30	0.365
31	31	0.719
32	32	0.411
33	33	0.161
34	34	0.771
35	35	0.108
36	36	0.0594
37	37	0.065
38	38	0.397
39	39	0.782
4	4	0.921
40	40	0.192
41	41	0.0283
42	42	0.294
43	43	0.0198
44	44	0.537
45	45	0.75
46	46	0.187
47	47	0.501
48	48	0.477
49	49	0.153
5	5	0.296
50	50	0.947
51	51	0.56
52	52	0.349
53	53	0.67
54	54	0.482
55	55	0.62
56	56	0.697
57	57	0.835
58	58	0.185
59	59	0.247
6	6	0.747
60	60	0.04
61	61	0.729
62	62	0.0928
63	63	0.533
64	64	0.484
65	65	0.232
66	66	0.424
67	67	0.399
68	68	0.461
69	69	0.21
7	7	0.218
70	70	0.0435
71	71	0.0284
72	72	0.193
73	73	0.268
74	74	0.0454
75	75	0.146
76	76	0.171
77	77	0.563
78	78	0.122
79	79	0.693
8	8	0.337
80	80	0.158
81	81	0.289
82	82	0.203
83	83	0.033
84	84	0.0836
85	85	0.0517
86	86	0.0831
87	87	0.341
88	88	0.758
89	89	0.213
9	9	0.389
90	90	0.0838
91	91	0.437
92	92	0.27
93	93	0.489
94	94	0.0886
95	95	0.538
96	96	0.404
97	97	0.466
98	98	0.156
99	99	0.0948

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13545

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011108 human CD14-positive monocytes - treated with lipopolysaccharide sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000335 (LPS treatment sample)
0011108 (human CD14-positive monocytes - treated with lipopolysaccharide sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00004980
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008161;DRR009033;DRZ000458;DRZ001843;DRZ011808;DRZ013193
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000335,FF:0011108
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.84!6905.53!PLEK;;chr7:115670804..115670825,-!p1@TFEC!3.06!1155.09!TFEC;;chr11:47400078..47400106,-!p1@SPI1!2.84!684.82!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.64!438.93!IRF8;;chr3:101546827..101546847,+!p2@NFKBIZ!2.36!317.41!NFKBIZ;;chr10:104155659..104155676,+!p4@NFKB2!2.21!200.00!NFKB2;;chr14:35872453..35872485,-!p2@NFKBIA!2.20!370.58!NFKBIA;;chr10:51572408..51572454,+!p3@NCOA4!2.18!831.35!NCOA4;;chr11:47400062..47400077,-!p2@SPI1!2.17!147.79!SPI1;;chr2:192015701..192015743,-!p1@STAT4!2.16!192.73!STAT4;;chr2:68592394..68592405,+!p2@PLEK!2.13!133.55!PLEK;;chr14:35873947..35873965,-!p1@NFKBIA!2.06!6621.66!NFKBIA;;chr2:70142232..70142251,+!p1@MXD1!2.05!589.25!MXD1;;chr12:72056800..72056834,+!p1@THAP2!2.04!145.26!THAP2;;chr20:39317868..39317884,-!p1@MAFB!2.02!1139.26!MAFB;;chr11:47399947..47399961,-!p3@SPI1!2.02!104.12!SPI1;;chr6:106534192..106534224,+!p1@PRDM1!2.00!267.73!PRDM1;;chr21:30671690..30671762,+!p2@BACH1!1.99!313.30!BACH1;;chr10:31288398..31288455,-!p2@ZNF438!1.99!111.39!ZNF438;;chr10:64018918..64018936,+!p2@ZNF365!1.96!91.14!ZNF365;;chr16:31885093..31885165,+!p1@ZNF267!1.94!1241.17!ZNF267;;chr12:54778471..54778528,-!p1@ZNF385A!1.94!85.13!ZNF385A;;chr21:34442439..34442455,+!p1@OLIG1!1.94!85.13!OLIG1;;chr21:30673091..30673135,+!p7@BACH1!1.93!84.81!BACH1;;chr2:145277640..145277771,-!p1@ZEB2!1.92!1022.81!ZEB2;;chr2:61108695..61108753,+!p1@REL!1.91!516.47!REL;;chr1:38325227..38325246,-!p2@MTF1!1.91!108.23!MTF1;;chr4:103422499..103422632,+!p1@NFKB1!1.89!1483.58!NFKB1;;chr6:126240380..126240430,+!p2@NCOA7!1.89!191.14!NCOA7;;chr10:64576105..64576133,-!p1@EGR2!1.86!142.09!EGR2;;chr5:142782823..142782854,-!p3@NR3C1!1.84!96.84!NR3C1;;chr12:72056749..72056767,+!p6@THAP2!1.84!75.95!THAP2;;chr19:45971246..45971265,+!p1@FOSB!1.83!1157.94!FOSB;;chr10:104155480..104155534,+!p2@NFKB2!1.83!413.62!NFKB2;;chr11:47400032..47400043,-!p5@SPI1!1.82!65.19!SPI1;;chr10:51572339..51572376,+!p4@NCOA4!1.81!138.93!NCOA4;;chr3:101568349..101568365,+!p1@NFKBIZ!1.80!3029.49!NFKBIZ;;chr2:145275162..145275202,-!p2@ZEB2!1.80!345.58!ZEB2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.79!708.24!ZC3H12A;;chrX:153305787..153305807,-!p3@MECP2!1.79!60.44!MECP2;;chr18:77155922..77155939,+!p1@NFATC1!1.77!151.90!NFATC1;;chr7:50344289..50344323,+!p1@IKZF1!1.77!57.91!IKZF1;;chr12:72056773..72056796,+!p3@THAP2!1.76!73.10!THAP2;;chr7:115670792..115670797,-!p2@TFEC!1.73!52.22!TFEC;;chr21:30671235..30671253,+!p1@BACH1!1.71!600.33!BACH1;;chr11:615942..615957,-!p1@IRF7!1.70!436.09!IRF7;;chr10:104154246..104154347,+!p3@NFKB2!1.70!283.55!NFKB2;;chr11:65430554..65430579,-!p3@RELA!1.69!118.67!RELA;;chr8:123793988..123794016,+!p1@ZHX2!1.69!81.96!ZHX2;;chr6:106534230..106534254,+!p2@PRDM1!1.67!110.76!PRDM1;;chr10:31288370..31288393,-!p3@ZNF438!1.67!46.20!ZNF438;;chr11:47399996..47400014,-!p4@SPI1!1.67!45.25!SPI1;;chr14:35872494..35872511,-!p5@NFKBIA!1.64!55.38!NFKBIA;;chr2:68615063..68615089,+!p4@PLEK!1.64!42.72!PLEK;;chr6:12012170..12012245,+!p1@HIVEP1!1.63!200.32!HIVEP1;;chr9:102584262..102584276,+!p1@NR4A3!1.63!90.51!NR4A3;;chr2:61108808..61108821,+!p3@REL!1.63!52.22!REL;;chr13:41635029..41635044,-!p4@ELF1!1.62!83.23!ELF1;;chr8:81397820..81397836,+!p2@ZBTB10!1.62!50.00!ZBTB10;;chr21:30672433..30672464,+!p6@BACH1!1.61!39.87!BACH1;;chr1:157108130..157108173,-!p1@ETV3!1.60!267.09!ETV3;;chr11:47400045..47400060,-!p6@SPI1!1.60!38.92!SPI1;;chr1:212782094..212782109,+!p1@ATF3!1.59!980.40!ATF3;;chr6:126240442..126240459,+!p4@NCOA7!1.59!48.42!NCOA7;;chr6:144385698..144385742,-!p2@PLAGL1!1.59!45.25!PLAGL1;;chr13:41593425..41593480,-!p1@ELF1!1.58!225.00!ELF1;;chr19:36391434..36391450,-!p1@NFKBID!1.58!71.20!NFKBID;;chr10:35484053..35484076,+!p1@CREM!1.57!87.34!CREM;;chr2:231090471..231090504,+!p2@SP140!1.57!36.39!SP140;;chr6:12012249..12012266,+!p5@HIVEP1!1.56!60.76!HIVEP1;;chr6:44233252..44233296,-!p1@NFKBIE!1.55!326.59!NFKBIE;;chr4:81104895..81104920,+!p2@PRDM8!1.55!50.63!PRDM8;;chr22:38597987..38598021,+!p2@MAFF!1.54!199.69!MAFF;;chr2:231084639..231084654,-!p2@SP110!1.54!55.06!SP110;;chr19:50432132..50432217,+!p2@ATF5!1.54!39.56!ATF5;;chr9:129567282..129567353,+!p1@ZBTB43!1.53!412.03!ZBTB43;;chr14:35872962..35873025,-!p3@NFKBIA!1.53!80.38!NFKBIA;;chr9:102584159..102584174,+!p2@NR4A3!1.53!58.23!NR4A3;;chr10:104155680..104155687,+!p6@NFKB2!1.52!31.96!NFKB2;;chr4:103446567..103446592,+!p15@NFKB1!1.50!30.70!NFKB1;;chr4:103423079..103423112,+!p4@NFKB1!1.50!30.38!NFKB1;;chr4:106068026..106068084,+!p1@TET2!1.47!248.11!TET2;;chr9:102584128..102584144,+!p3@NR4A3!1.47!53.80!NR4A3;;chr2:61108771..61108789,+!p4@REL!1.47!43.04!REL;;chr2:231090433..231090469,+!p1@SP140!1.47!28.80!SP140;;chr2:145277882..145277967,-!p3@ZEB2!1.46!46.84!ZEB2;;chr4:103446513..103446530,+!p19@NFKB1!1.46!27.85!NFKB1;;chr6:391743..391759,+!p1@IRF4!1.44!26.27!IRF4;;chr5:131826457..131826514,-!p1@IRF1!1.43!979.13!IRF1;;chr7:17338266..17338282,+!p1@AHR!1.43!267.09!AHR;;chr6:15246200..15246214,+!p2@JARID2!1.43!70.25!JARID2;;chr6:126240463..126240489,+!p6@NCOA7!1.43!28.80!NCOA7;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!25.95!ZBED1;;chr2:68615031..68615055,+!p3@PLEK!1.43!25.95!PLEK;;chr11:34642612..34642646,+!p1@EHF!1.43!25.95!EHF;;chr8:22550982..22550999,-!p1@EGR3!1.42!69.62!EGR3;;chr6:12011943..12012015,+!p2@HIVEP1!1.41!76.90!HIVEP1;;chr8:81397846..81397860,+!p3@ZBTB10!1.41!31.01!ZBTB10;;chr17:40440225..40440268,+!p3@STAT5A!1.40!30.70!STAT5A;;chr17:40440359..40440386,+!p4@STAT5A!1.40!24.05!STAT5A;;chr2:97202480..97202499,+!p1@ARID5A!1.39!228.49!ARID5A;;chr20:48599506..48599526,+!p1@SNAI1!1.39!146.52!SNAI1;;chr3:39195037..39195069,-!p2@CSRNP1!1.39!142.72!CSRNP1;;chr11:47399920..47399931,-!p7@SPI1!1.39!23.42!SPI1;;chr3:170075436..170075520,+!p1@SKIL!1.38!478.81!SKIL;;chr9:110252035..110252057,-!p1@KLF4!1.38!354.44!KLF4;;chr12:11802753..11802834,+!p2@ETV6!1.38!108.86!ETV6;;chr14:35872926..35872951,-!p4@NFKBIA!1.38!31.96!NFKBIA;;chr11:65430535..65430549,-!p4@RELA!1.38!26.90!RELA;;chrX:24167086..24167111,+!p4@ZFX!1.38!23.10!ZFX;;chr7:17338324..17338341,+!p3@AHR!1.37!73.74!AHR;;chr2:73520667..73520683,-!p1@EGR4!1.37!22.47!EGR4;;chrX:129244454..129244488,-!p1@ELF4!1.36!153.48!ELF4;;chr3:12329397..12329433,+!p2@PPARG!1.36!49.05!PPARG;;chr8:53373491..53373506,-!p4@ST18!1.36!22.15!ST18;;chr12:54778351..54778378,-!p6@ZNF385A!1.36!21.84!ZNF385A;;chr12:96588219..96588263,+!p2@ELK3!1.35!150.32!ELK3;;chr19:45252008..45252024,+!p2@BCL3!1.35!69.31!BCL3;;chr21:36260295..36260310,-!p3@RUNX1!1.35!34.18!RUNX1;;chr6:126240356..126240379,+!p7@NCOA7!1.34!25.32!NCOA7;;chr21:40177845..40177863,+!p1@ETS2!1.33!1162.68!ETS2;;chr12:48298765..48298783,-!p2@VDR!1.33!42.09!VDR;;chr2:145275228..145275241,-!p11@ZEB2!1.33!24.37!ZEB2;;chr17:38497662..38497713,+!p4@RARA!1.33!23.42!RARA;;chr11:615570..615721,-!p2@IRF7!1.31!37.98!IRF7;;chr8:72755345..72755349,-!p14@MSC!1.31!19.62!MSC;;chr12:72056706..72056717,+!p10@THAP2!1.31!19.30!THAP2;;chr2:191885737..191885750,-!p4@STAT1!1.31!19.30!STAT1;;chr7:106809470..106809481,+!p2@HBP1!1.30!26.58!HBP1;;chr4:83822199..83822239,+!p2@THAP9!1.30!22.47!THAP9;;chr10:3827371..3827386,-!p2@KLF6!1.29!153.48!KLF6;;chrX:153305741..153305753,-!p4@MECP2!1.29!18.67!MECP2;;chr20:56195474..56195506,-!p1@ZBP1!1.29!18.67!ZBP1;;chr12:52445218..52445237,+!p1@NR4A1!1.28!222.79!NR4A1;;chr3:37217736..37217753,-!p2@LRRFIP2!1.28!73.74!LRRFIP2;;chr2:238600998..238601013,+!p5@LRRFIP1!1.28!18.04!LRRFIP1;;chr6:106535598..106535637,+!p7@PRDM1!1.28!18.04!PRDM1;;chr8:72755203..72755239,-!p10@MSC!1.28!18.04!MSC;;chr6:143266297..143266356,-!p1@HIVEP2!1.27!83.86!HIVEP2;;chr8:72756063..72756125,-!p1@MSC!1.27!35.13!MSC;;chr2:208394817..208394834,+!p3@CREB1!1.26!68.36!CREB1;;chr4:81104985..81105005,+!p4@PRDM8!1.26!20.57!PRDM8;;chr14:35872414..35872425,-!p7@NFKBIA!1.26!18.99!NFKBIA;;chr14:35872542..35872553,-!p10@NFKBIA!1.26!17.41!NFKBIA;;chr2:68615096..68615115,+!p5@PLEK!1.26!17.41!PLEK;;chr5:88178983..88179012,-!p1@MEF2C!1.25!126.27!MEF2C;;chr10:114709999..114710031,+!p1@TCF7L2!1.24!378.81!TCF7L2;;chr16:69599899..69599919,+!p2@NFAT5!1.24!182.92!NFAT5;;chr1:161736038..161736056,+!p4@ATF6!1.24!38.29!ATF6;;chrX:153305962..153305995,-!p5@MECP2!1.24!16.46!MECP2;;chr1:158979872..158979898,+!p3@IFI16!1.23!48.42!IFI16;;chr19:45251395..45251432,+!p8@BCL3!1.23!15.82!BCL3;;chr10:104154415..104154434,+!p5@NFKB2!1.23!15.82!NFKB2;;chr2:185463247..185463263,+!p1@ZNF804A!1.22!27.53!ZNF804A;;chr2:28618532..28618610,+!p4@FOSL2!1.22!26.58!FOSL2;;chr14:75745523..75745537,+!p1@FOS!1.21!1793.71!FOS;;chr21:40177892..40177903,+!p2@ETS2!1.21!60.13!ETS2;;chr1:25256756..25256774,-!p1@RUNX3!1.21!28.17!RUNX3;;chr18:3449586..3449617,+!p8@TGIF1!1.21!24.05!TGIF1;;chr2:70167296..70167306,+!p3@MXD1!1.21!23.10!MXD1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.20!79.12!LRRFIP1;;chr10:35416142..35416169,+!p3@CREM!1.20!38.61!CREM;;chr1:158985493..158985535,+!p4@IFI16!1.19!21.84!IFI16;;chr11:64764435..64764449,-!p1@BATF2!1.19!19.94!BATF2;;chr2:191878812..191878823,-!p2@STAT1!1.19!18.35!STAT1;;chr4:106066712..106066728,+!p8@TET2!1.19!14.56!TET2;;chr20:47894569..47894799,-!p1@ZNFX1!1.18!371.84!ZNFX1;;chr12:96588279..96588299,+!p4@ELK3!1.18!66.77!ELK3;;chr10:104155455..104155479,+!p1@NFKB2!1.17!197.47!NFKB2;;chr2:70142189..70142223,+!p2@MXD1!1.17!97.79!MXD1;;chr1:38325256..38325280,-!p1@MTF1!1.17!84.50!MTF1;;chr19:47616992..47617011,-!p4@ZC3H4!1.17!29.11!ZC3H4;;chr18:3449618..3449634,+!p13@TGIF1!1.17!17.09!TGIF1;;chr2:157189180..157189290,-!p1@NR4A2!1.16!69.31!NR4A2;;chr2:178129358..178129403,-!p5@NFE2L2!1.16!53.48!NFE2L2;;chr8:72756267..72756296,-!p4@MSC!1.16!19.94!MSC;;chr21:30672734..30672748,+!p11@BACH1!1.16!13.61!BACH1;;chr13:41593392..41593403,-!p7@ELF1!1.16!13.61!ELF1;;chr14:24630465..24630531,+!p1@IRF9!1.15!497.48!IRF9;;chr18:3449720..3449749,+!p2@TGIF1!1.15!27.85!TGIF1;;chr8:81397876..81397898,+!p5@ZBTB10!1.15!15.51!ZBTB10;;chr2:192015677..192015691,-!p3@STAT4!1.15!12.97!STAT4;;chr20:48807351..48807384,+!p1@CEBPB!1.14!1305.41!CEBPB;;chr6:35310395..35310410,+!p2@PPARD!1.14!49.68!PPARD;;chr1:221052733..22105274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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000335,FF:0000625,FF:0011108,FF:11885-125D4
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor3.CNhs13545.11885-125D4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor3.CNhs13545.11885-125D4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor3.CNhs13545.11885-125D4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor3.CNhs13545.11885-125D4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor3.CNhs13545.11885-125D4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11885-125D4
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0011108
+|is_a=EFO:0002091;;FF:0011108
+|is_obsolete=
+|library_id=CNhs13545
+|library_id_phase_based=2:CNhs13545
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11885
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11885
 |name=CD14+ monocytes - treated with lipopolysaccharide, donor3
 |namespace=
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13545,LSID1029,release012,COMPLETED
-|profile_rnaseq=,,,
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 |profile_srnaseq=,,,
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 |rna_box=125
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@@ Line 57: / Line 79: @@
 |rna_weight_ug=1.66743
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 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=
 |top_motifs=IRF7:6.20002226303;HLF:5.7662540421;NFE2:5.56900081549;FOS_FOS{B,L1}_JUN{B,D}:5.46820917377;NFIL3:5.27257889193;BACH2:5.14482396247;NFE2L2:5.11408882639;IRF1,2:5.10969153141;NFKB1_REL_RELA:5.10197540961;CEBPA,B_DDIT3:5.09415804329;FOSL2:5.04260997879;PAX8:4.62728748717;FOXP3:4.27857402622;PAX2:4.22663635574;STAT5{A,B}:4.19303186086;SPIB:3.82433587014;NFATC1..3:3.77204596765;HSF1,2:3.6088027941;SPI1:3.39746254476;DMAP1_NCOR{1,2}_SMARC:3.31670388138;ATF5_CREB3:3.19583462169;ETS1,2:3.06988213942;NANOG{mouse}:3.06500795078;STAT2,4,6:3.02993821365;CDX1,2,4:2.81113889428;ATF4:2.54008910761;SREBF1,2:2.49321356982;CREB1:2.46164486913;RUNX1..3:2.44435429298;HMGA1,2:2.37956394696;JUN:2.33733630609;FOXN1:2.28579512053;ATF2:2.11185981932;ATF6:2.07536608083;PAX3,7:1.95994308881;NFE2L1:1.86530227217;ALX4:1.74310640976;PDX1:1.56877169575;RXRA_VDR{dimer}:1.41748264304;ELF1,2,4:1.36611224666;XBP1:1.33073302315;NR1H4:1.29611484765;TGIF1:1.24523919406;POU2F1..3:1.12094259133;MAFB:1.11572747348;PPARG:1.00809663875;ZBTB16:0.978507432868;IKZF1:0.929164371167;HOX{A5,B5}:0.894905499553;RBPJ:0.862787527124;TBP:0.862499807956;FOXO1,3,4:0.740964947899;SRF:0.655405124412;HOXA9_MEIS1:0.631425362209;EN1,2:0.609969567425;OCT4_SOX2{dimer}:0.607691969787;STAT1,3:0.561345553713;NR3C1:0.560726964675;PRDM1:0.489151626217;PAX4:0.416687862405;BPTF:0.315998730527;POU5F1:0.289792100803;ALX1:0.275628193051;VSX1,2:0.211015811578;EP300:0.149222392662;GLI1..3:0.133107605009;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0689055811521;PAX1,9:0.0488816274461;TLX2:0.0259769567;NANOG:-0.0206358964705;HBP1_HMGB_SSRP1_UBTF:-0.0691894913435;RORA:-0.294229051115;GATA4:-0.306938823289;AHR_ARNT_ARNT2:-0.316743585814;HIF1A:-0.343314725771;NKX3-1:-0.379373250475;MEF2{A,B,C,D}:-0.429597271225;SOX2:-0.521905623419;FOX{D1,D2}:-0.522464392263;NR6A1:-0.540271713866;POU3F1..4:-0.54536795748;EGR1..3:-0.562294292607;IKZF2:-0.588101518504;FOXM1:-0.618923811165;RFX2..5_RFXANK_RFXAP:-0.632288330819;SMAD1..7,9:-0.70340422449;NFIX:-0.735120501396;FOXL1:-0.781424850221;MYB:-0.818716111333;DBP:-0.822515552777;TFCP2:-0.834740833787;HMX1:-0.844402611395;PRRX1,2:-0.851330144061;ADNP_IRX_SIX_ZHX:-0.879521736863;CRX:-0.890682952443;PAX6:-0.927069323183;SOX5:-0.980675560172;FOXD3:-0.987404493286;TAL1_TCF{3,4,12}:-1.00364565418;HES1:-1.01753588957;CDC5L:-1.1486298445;FOXA2:-1.2077139945;POU6F1:-1.26748248642;TEF:-1.27802542871;MZF1:-1.29436237568;SPZ1:-1.31713375593;NHLH1,2:-1.3349136137;ESR1:-1.34660588898;PITX1..3:-1.34872288626;REST:-1.3906144623;HNF4A_NR2F1,2:-1.40520766227;HOX{A4,D4}:-1.40787830978;E2F1..5:-1.44715173035;RFX1:-1.44766677264;NKX2-2,8:-1.46887143008;HNF1A:-1.47717269318;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.50854323497;MYFfamily:-1.52837787094;FOX{F1,F2,J1}:-1.52941883917;MED-1{core}:-1.54832619452;ESRRA:-1.55803397914;ZFP161:-1.66396643623;GTF2A1,2:-1.67479758248;ZNF384:-1.70792569753;ZNF238:-1.7135817732;MTE{core}:-1.759965966;CUX2:-1.76340352765;FOXP1:-1.78637362419;TEAD1:-1.84262420086;NKX2-1,4:-1.84843281828;GATA6:-1.90005092106;BREu{core}:-1.93073800518;NKX6-1,2:-1.99869414067;SP1:-2.02061955489;TBX4,5:-2.02223880239;NKX2-3_NKX2-5:-2.03790915392;MYBL2:-2.05282188499;ZBTB6:-2.09388679276;TFDP1:-2.10686902721;HOX{A6,A7,B6,B7}:-2.10800934069;GTF2I:-2.12250228874;SOX{8,9,10}:-2.13656227416;POU1F1:-2.13866342646;ZNF148:-2.21389633466;ELK1,4_GABP{A,B1}:-2.24063645146;TLX1..3_NFIC{dimer}:-2.25792183494;ZEB1:-2.26351557831;GZF1:-2.30449605785;RXR{A,B,G}:-2.30544151344;PATZ1:-2.32177781349;NFY{A,B,C}:-2.32694903358;TFAP4:-2.33557212737;ONECUT1,2:-2.33656963363;TFAP2B:-2.367679967;FOX{I1,J2}:-2.39716289019;NKX3-2:-2.4111227053;MTF1:-2.42729886394;SOX17:-2.43613149107;GFI1B:-2.44973541559;SNAI1..3:-2.48518634851;TP53:-2.4899283084;MAZ:-2.51429518559;XCPE1{core}:-2.53971474197;T:-2.56135281301;GCM1,2:-2.5686900606;ARID5B:-2.60504068121;KLF4:-2.64941004177;TFAP2{A,C}:-2.75846669899;HIC1:-2.76940681943;MYOD1:-2.78980375764;ZIC1..3:-2.94050049396;PBX1:-3.04995594704;EVI1:-3.05022800818;UFEwm:-3.05141827631;bHLH_family:-3.06546006622;AIRE:-3.0989814513;NR5A1,2:-3.11801778035;RREB1:-3.15268808438;EBF1:-3.17210881525;GFI1:-3.21045979708;FOXQ1:-3.21939024529;YY1:-3.32399323697;NRF1:-3.32437192431;PAX5:-3.44826237898;LMO2:-3.64578265091;LHX3,4:-3.83775609932;ZNF423:-3.89810574382;AR:-3.93365574311;ZNF143:-4.00814151883;LEF1_TCF7_TCF7L1,2:-4.07225038205;TOPORS:-4.52909381901;HAND1,2:-5.23271588434
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11885-125D4;search_select_hide=table117:FF:11885-125D4
 }}

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FF:11885-125D4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:26, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0