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{{CL
{{CL
|id=CL:0002632
|alt_id=
|name=epithelial cell of lower respiratory tract
|namespace=cell
|def=
|xref=
|is_a=CL:0002368
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-06-21T12:29:31Z
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002632
|is_a=CL:0002368
|is_obsolete=
|located_in=
|located_in=
|name=epithelial cell of lower respiratory tract
|namespace=FANTOM
|obo_creation_date=2011-06-21T12:29:31Z
|part_of=UBERON:0001558
|part_of=UBERON:0001558
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:46, 12 September 2014

Name:epithelial cell of lower respiratory tract
Namespace:FANTOM
Created by:tmeehan
Creation date:2011-06-21T12:29:31Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002368(respiratory epithelial cell)
part_of:UBERON:0001558(lower respiratory tract)



Children


is a:CL:0002202 (epithelial cell of tracheobronchial tree)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002632 (epithelial cell of lower respiratory tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr4:88563185..88563192,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr4:88563185..88563192, -
1.58e-86FFCP PHASE1:Mm9::chr13:115722413..115722430,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr13:115722413..115722430, +
1.58e-86FFCP PHASE1:Mm9::chr5:135422125..135422141,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr5:135422125..135422141, -
1.58e-86FFCP PHASE2:Mm9::chr1:151954385..151954387,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr1:151954385..151954387, +
1.58e-86FFCP PHASE1:Mm9::chr13:72401408..72401416,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr13:72401408..72401416, -
1.58e-86FFCP PHASE1:Mm9::chr1:151954385..151954387,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr1:151954385..151954387, +
1.58e-86FFCP PHASE1:Mm9::chr11:100006864..100006873,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr11:100006864..100006873, +
1.58e-86FFCP PHASE2:Mm9::chr13:115644652..115644657,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr13:115644652..115644657, -
1.58e-86FFCP PHASE2:Mm9::chr6:147205603..147205610,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr6:147205603..147205610, +
1.58e-86FFCP PHASE2:Mm9::chr9:110941246..110941254,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr9:110941246..110941254, +
1.58e-86FFCP PHASE1:Mm9::chr11:96608719..96608730,-#_0802fe86a0eaff9da84ab9de8849dd40p1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE1:Mm9::chr5:135420996..135421000,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr5:135420996..135421000, +
1.58e-86FFCP PHASE1:Mm9::chr12:17549752..17549763,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr12:17549752..17549763, +
1.58e-86FFCP PHASE1:Mm9::chr6:147205603..147205610,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr6:147205603..147205610, +
1.58e-86FFCP PHASE2:Mm9::chr16:32641594..32641601,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr16:32641594..32641601, +
1.58e-86FFCP PHASE2:Mm9::chr2:164389604..164389615,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr2:164389604..164389615, +
1.58e-86FFCP PHASE2:Mm9::chr4:88696144..88696152,+#_0802fe86a0eaff9da84ab9de8849dd40p3@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr16:32641594..32641601,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr16:32641594..32641601, +
1.58e-86FFCP PHASE1:Mm9::chr9:110941233..110941240,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr9:110941233..110941240, +
1.58e-86FFCP PHASE2:Mm9::chr6:147205677..147205683,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr6:147205677..147205683, +
1.58e-86FFCP PHASE1:Mm9::chr4:88696144..88696152,+#_0802fe86a0eaff9da84ab9de8849dd40p3@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr6:147205677..147205683,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr6:147205677..147205683, +
1.58e-86FFCP PHASE2:Mm9::chr2:164393992..164394012,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr2:164393992..164394012, -
1.58e-86FFCP PHASE2:Mm9::chr4:88696177..88696184,+#_0802fe86a0eaff9da84ab9de8849dd40p2@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr15:101258041..101258052,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr15:101258041..101258052, +
1.58e-86FFCP PHASE2:Mm9::chr1:108303887..108303893,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr1:108303887..108303893, +
1.58e-86FFCP PHASE1:Mm9::chr9:110941246..110941254,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr9:110941246..110941254, +
1.58e-86FFCP PHASE1:Mm9::chr2:164389604..164389615,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr2:164389604..164389615, +
1.58e-86FFCP PHASE1:Mm9::chr6:147338308..147338339,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr6:147338308..147338339, -
1.58e-86FFCP PHASE2:Mm9::chr2:60538178..60538182,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr2:60538178..60538182, -
1.58e-86FFCP PHASE2:Mm9::chr5:91198876..91198885,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr5:91198876..91198885, +
1.58e-86FFCP PHASE1:Mm9::chr2:60538178..60538182,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr2:60538178..60538182, -
1.58e-86FFCP PHASE1:Mm9::chr13:115644652..115644657,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr13:115644652..115644657, -
1.58e-86FFCP PHASE2:Mm9::chr17:25885558..25885567,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr17:25885558..25885567, +
1.58e-86FFCP PHASE2:Mm9::chr13:115722413..115722430,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr13:115722413..115722430, +
1.58e-86FFCP PHASE2:Mm9::chr11:4165247..4165267,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr11:4165247..4165267, +
1.58e-86FFCP PHASE2:Mm9::chr4:88563185..88563192,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr4:88563185..88563192, -
1.58e-86FFCP PHASE1:Mm9::chr15:101258041..101258052,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr15:101258041..101258052, +
1.58e-86FFCP PHASE1:Mm9::chr3:89487103..89487111,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr3:89487103..89487111, -
1.58e-86FFCP PHASE1:Mm9::chr5:91198876..91198885,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr5:91198876..91198885, +
1.58e-86FFCP PHASE1:Mm9::chr4:88696177..88696184,+#_0802fe86a0eaff9da84ab9de8849dd40p2@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr5:135420996..135421000,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr5:135420996..135421000, +
1.58e-86FFCP PHASE2:Mm9::chr6:147338308..147338339,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr6:147338308..147338339, -
1.58e-86FFCP PHASE2:Mm9::chr12:17549752..17549763,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr12:17549752..17549763, +
1.58e-86FFCP PHASE2:Mm9::chr13:72401408..72401416,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr13:72401408..72401416, -
1.58e-86FFCP PHASE1:Mm9::chr1:108303887..108303893,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr1:108303887..108303893, +
1.58e-86FFCP PHASE2:Mm9::chr11:96608719..96608730,-#_0802fe86a0eaff9da84ab9de8849dd40p1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE2:Mm9::chr3:89487103..89487111,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr3:89487103..89487111, -
1.58e-86FFCP PHASE1:Mm9::chr2:164393992..164394012,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr2:164393992..164394012, -
1.58e-86FFCP PHASE2:Mm9::chr5:135422125..135422141,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr5:135422125..135422141, -
1.58e-86FFCP PHASE2:Mm9::chr5:91199084..91199088,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr5:91199084..91199088, -
1.58e-86FFCP PHASE1:Mm9::chr11:4165247..4165267,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr11:4165247..4165267, +
1.58e-86FFCP PHASE2:Mm9::chr11:86461733..86461747,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr11:86461733..86461747, -
1.58e-86FFCP PHASE1:Mm9::chr17:25885558..25885567,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr17:25885558..25885567, +
1.58e-86FFCP PHASE1:Mm9::chr11:86461733..86461747,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr11:86461733..86461747, -
1.58e-86FFCP PHASE1:Mm9::chr5:91199084..91199088,-#_0802fe86a0eaff9da84ab9de8849dd40p@chr5:91199084..91199088, -
1.58e-86FFCP PHASE2:Mm9::chr11:100006864..100006873,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr11:100006864..100006873, +
1.58e-86FFCP PHASE2:Mm9::chr9:110941233..110941240,+#_0802fe86a0eaff9da84ab9de8849dd40p@chr9:110941233..110941240, +
4.4e-78FFCP PHASE1:Hg19::chr7:135018332..135018336,+#_77f8e5fefa85e13e4658398cab32f254p@chr7:135018332..135018336, +
4.4e-78FFCP PHASE2:Hg19::chr7:135018332..135018336,+#_77f8e5fefa85e13e4658398cab32f254p@chr7:135018332..135018336, +
5.16e-78FFCP PHASE1:Hg19::chr3:189632708..189632721,-#_d5877b9e418bdb0a67217bf5f246316ap@chr3:189632708..189632721, -
5.16e-78FFCP PHASE2:Hg19::chr3:189632708..189632721,-#_d5877b9e418bdb0a67217bf5f246316ap@chr3:189632708..189632721, -
1.33e-65FFCP PHASE1:Mm9::chr19:47939269..47939279,-#_bbafe7b1150687a16f0f7701e9168b95p@chr19:47939269..47939279, -
1.33e-65FFCP PHASE2:Mm9::chr3:121437538..121437546,+#_bbafe7b1150687a16f0f7701e9168b95p@chr3:121437538..121437546, +
1.33e-65FFCP PHASE1:Mm9::chr6:147212620..147212625,+#_bbafe7b1150687a16f0f7701e9168b95p@chr6:147212620..147212625, +
1.33e-65FFCP PHASE1:Mm9::chr3:121437538..121437546,+#_bbafe7b1150687a16f0f7701e9168b95p@chr3:121437538..121437546, +
1.33e-65FFCP PHASE2:Mm9::chr2:144564146..144564166,+#_bbafe7b1150687a16f0f7701e9168b95p3@Dtd1
1.33e-65FFCP PHASE1:Mm9::chr14:31386795..31386797,-#_bbafe7b1150687a16f0f7701e9168b95p@chr14:31386795..31386797, -
1.33e-65FFCP PHASE1:Mm9::chrX:20383628..20383635,+#_bbafe7b1150687a16f0f7701e9168b95p@chrX:20383628..20383635, +
1.33e-65FFCP PHASE2:Mm9::chrX:20383628..20383635,+#_bbafe7b1150687a16f0f7701e9168b95p@chrX:20383628..20383635, +
1.33e-65FFCP PHASE1:Mm9::chr19:47932377..47932386,-#_bbafe7b1150687a16f0f7701e9168b95p@chr19:47932377..47932386, -
1.33e-65FFCP PHASE2:Mm9::chr3:90392458..90392472,+#_bbafe7b1150687a16f0f7701e9168b95p@chr3:90392458..90392472, +
1.33e-65FFCP PHASE2:Mm9::chr6:147212620..147212625,+#_bbafe7b1150687a16f0f7701e9168b95p@chr6:147212620..147212625, +
1.33e-65FFCP PHASE1:Mm9::chr11:29642912..29642916,-#_bbafe7b1150687a16f0f7701e9168b95p@chr11:29642912..29642916, -
1.33e-65FFCP PHASE2:Mm9::chr3:121437587..121437593,+#_bbafe7b1150687a16f0f7701e9168b95p@chr3:121437587..121437593, +
1.33e-65FFCP PHASE1:Mm9::chr3:121437587..121437593,+#_bbafe7b1150687a16f0f7701e9168b95p@chr3:121437587..121437593, +
1.33e-65FFCP PHASE2:Mm9::chr11:4164303..4164316,+#_bbafe7b1150687a16f0f7701e9168b95p@chr11:4164303..4164316, +
1.33e-65FFCP PHASE2:Mm9::chr19:47932377..47932386,-#_bbafe7b1150687a16f0f7701e9168b95p@chr19:47932377..47932386, -
1.33e-65FFCP PHASE2:Mm9::chr11:100002128..100002131,+#_bbafe7b1150687a16f0f7701e9168b95p@chr11:100002128..100002131, +
1.33e-65FFCP PHASE1:Mm9::chr11:4164303..4164316,+#_bbafe7b1150687a16f0f7701e9168b95p@chr11:4164303..4164316, +
1.33e-65FFCP PHASE2:Mm9::chr11:29642912..29642916,-#_bbafe7b1150687a16f0f7701e9168b95p@chr11:29642912..29642916, -
1.33e-65FFCP PHASE2:Mm9::chr14:31386795..31386797,-#_bbafe7b1150687a16f0f7701e9168b95p@chr14:31386795..31386797, -
1.33e-65FFCP PHASE1:Mm9::chr14:34905716..34905718,+#_bbafe7b1150687a16f0f7701e9168b95p@chr14:34905716..34905718, +
1.33e-65FFCP PHASE1:Mm9::chr11:100002128..100002131,+#_bbafe7b1150687a16f0f7701e9168b95p@chr11:100002128..100002131, +
1.33e-65FFCP PHASE2:Mm9::chr19:47939269..47939279,-#_bbafe7b1150687a16f0f7701e9168b95p@chr19:47939269..47939279, -
1.33e-65FFCP PHASE1:Mm9::chr2:144564146..144564166,+#_bbafe7b1150687a16f0f7701e9168b95p3@Dtd1
1.33e-65FFCP PHASE2:Mm9::chr14:34905716..34905718,+#_bbafe7b1150687a16f0f7701e9168b95p@chr14:34905716..34905718, +
1.33e-65FFCP PHASE1:Mm9::chr3:90392458..90392472,+#_bbafe7b1150687a16f0f7701e9168b95p@chr3:90392458..90392472, +
6.04e-65FFCP PHASE1:Mm9::chr17:25888467..25888513,-#_82f8c8dfb18f8966f7f4d671ff7b4e37p@chr17:25888467..25888513, -
6.04e-65FFCP PHASE1:Mm9::chr1:90456476..90456498,+#_82f8c8dfb18f8966f7f4d671ff7b4e37p@chr1:90456476..90456498, +
6.04e-65FFCP PHASE1:Mm9::chr15:38385124..38385138,+#_82f8c8dfb18f8966f7f4d671ff7b4e37p@chr15:38385124..38385138, +
6.04e-65FFCP PHASE1:Mm9::chr19:47928736..47928764,+#_82f8c8dfb18f8966f7f4d671ff7b4e37p@chr19:47928736..47928764, +
6.04e-65FFCP PHASE2:Mm9::chr1:90456476..90456498,+#_82f8c8dfb18f8966f7f4d671ff7b4e37p@chr1:90456476..90456498, +
6.04e-65FFCP PHASE2:Mm9::chr15:38385124..38385138,+#_82f8c8dfb18f8966f7f4d671ff7b4e37p@chr15:38385124..38385138, +
6.04e-65FFCP PHASE2:Mm9::chr17:25888467..25888513,-#_82f8c8dfb18f8966f7f4d671ff7b4e37p@chr17:25888467..25888513, -
6.04e-65FFCP PHASE2:Mm9::chr19:47928736..47928764,+#_82f8c8dfb18f8966f7f4d671ff7b4e37p@chr19:47928736..47928764, +
5.88e-57FFCP PHASE1:Hg19::chr10:73679250..73679255,-#_61038e856c01813210d0121df58fb4f6p@chr10:73679250..73679255, -
5.88e-57FFCP PHASE2:Hg19::chr10:73679250..73679255,-#_61038e856c01813210d0121df58fb4f6p@chr10:73679250..73679255, -
5.25e-54FFCP PHASE1:Hg19::chr9:26747081..26747110,+#_01be34e78d0d67ed14f651f2dc39ad7ep@chr9:26747081..26747110, +
5.25e-54FFCP PHASE2:Hg19::chr9:26747081..26747110,+#_01be34e78d0d67ed14f651f2dc39ad7ep@chr9:26747081..26747110, +

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