CL:0002367: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by=tmeehan | |created_by=tmeehan | ||
| | |def="A cell that lines the trabecular meshwork, which is an area of tissue in the��eye��located around the base of the��cornea, near the��ciliary body, and is responsible for draining the��aqueous humor��from the eye via the��anterior chamber��(the chamber on the front of the eye covered by the cornea). This cell may play a role in regulating intraocular pressure." [GOC:tfm, PMID:14500801] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0002367 | |||
|is_a=CL:0000115 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=trabecular meshwork cell | |||
|namespace=FANTOM | |||
|obo_creation_date=2010-09-23T04:18:50Z | |||
|part_of=UBERON:0005969 | |part_of=UBERON:0005969 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
|subset= | |||
|synonym="trabeculocyte" EXACT [] | |||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 16:42, 12 September 2014
| Name: | trabecular meshwork cell |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A cell that lines the trabecular meshwork, which is an area of tissue in the��eye��located around the base of the��cornea, near the��ciliary body, and is responsible for draining the��aqueous humor��from the eye via the��anterior chamber��(the chamber on the front of the eye covered by the cornea). This cell may play a role in regulating intraocular pressure." [GOC:tfm, PMID:14500801] |
| Synonyms: | "trabeculocyte" EXACT [] |
| Created by: | tmeehan |
| Creation date: | 2010-09-23T04:18:50Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000115(endothelial cell) |
|---|---|
| part_of: | UBERON:0005969(reticulum trabeculare) |
Children
| derives from: | FF:0000188 (human trabecular meshwork cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11532-120A2 (Trabecular Meshwork Cells, donor1)
- 11612-122A1 (Trabecular Meshwork Cells, donor2)
- 11693-123A1 (Trabecular Meshwork Cells, donor3)
Mouse (Mus musculus)
- 11532-120A2 (Trabecular Meshwork Cells, donor1)
- 11612-122A1 (Trabecular Meshwork Cells, donor2)
- 11693-123A1 (Trabecular Meshwork Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002367 (trabecular meshwork cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.52e-50 | FFCP PHASE2:Hg19::chr4:111558887..111558892,-#_5a8edc84a318b2903ce313a4caf8dba8 | p14@PITX2 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr4:111558887..111558892,-#_5a8edc84a318b2903ce313a4caf8dba8 | p14@PITX2 |
| 2.01e-40 | FFCP PHASE2:Hg19::chr6:105232902..105232908,-#_44169c723ea4c28dac5365c545449aea | p8@HACE1 |
| 2.01e-40 | FFCP PHASE1:Hg19::chr6:105232902..105232908,-#_44169c723ea4c28dac5365c545449aea | p8@HACE1 |
| 9.84e-37 | FFCP PHASE2:Hg19::chr19:10983098..10983110,+#_8e115855223e7d7ee8757e0bf86b0b85 | p@chr19:10983098..10983110, + |
| 9.84e-37 | FFCP PHASE1:Hg19::chr19:10983098..10983110,+#_8e115855223e7d7ee8757e0bf86b0b85 | p@chr19:10983098..10983110, + |
| 7.33e-32 | FFCP PHASE2:Hg19::chr6:50786479..50786490,+#_f3bcc032d2a88c39496041f8bcfb8f1d | p6@TFAP2B |
| 7.33e-32 | FFCP PHASE1:Hg19::chr6:50786479..50786490,+#_f3bcc032d2a88c39496041f8bcfb8f1d | p6@TFAP2B |
| 5.5e-31 | FFCP PHASE2:Hg19::chr4:111536662..111536674,-#_afacb0ce2ceb34ff65bfba590be472cf | p3@ENST00000513690 |
| 5.5e-31 | FFCP PHASE1:Hg19::chr4:111536662..111536674,-#_afacb0ce2ceb34ff65bfba590be472cf | p3@ENST00000513690 |
| 6.96e-30 | FFCP PHASE2:Hg19::chr3:129279438..129279448,-#_af22ea63efd1c5ecea3afc419cad0aac | p17@PLXND1 |
| 6.96e-30 | FFCP PHASE1:Hg19::chr3:129279438..129279448,-#_af22ea63efd1c5ecea3afc419cad0aac | p17@PLXND1 |
| 2.96e-29 | FFCP PHASE2:Hg19::chr6:50786631..50786635,+#_297cf22c6e0dcc88767677337aa54f08 | p11@TFAP2B |
| 2.96e-29 | FFCP PHASE1:Hg19::chr6:50786631..50786635,+#_297cf22c6e0dcc88767677337aa54f08 | p11@TFAP2B |
| 6.99e-29 | FFCP PHASE2:Hg19::chr1:153744081..153744096,+#_484f24029b45cb41d77d72254f2353cf | p@chr1:153744081..153744096, + |
| 6.99e-29 | FFCP PHASE1:Hg19::chr1:153744081..153744096,+#_484f24029b45cb41d77d72254f2353cf | p@chr1:153744081..153744096, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr11:61634768..61634777,+#_aeaf73c8be1212d62cc4351ecf30859b | p@chr11:61634768..61634777, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr11:61634768..61634777,+#_aeaf73c8be1212d62cc4351ecf30859b | p@chr11:61634768..61634777, + |
| 3.91e-25 | FFCP PHASE1:Hg19::chr6:50789737..50789746,+#_4d38f1fdcbe69b2e626f454e4c539da2 | p10@TFAP2B |
| 3.91e-25 | FFCP PHASE2:Hg19::chr6:50789737..50789746,+#_4d38f1fdcbe69b2e626f454e4c539da2 | p10@TFAP2B |
| 2.3e-22 | FFCP PHASE1:Hg19::chr8:60032478..60032492,+#_b10a6f66680495d8380b5cd0b049dc2a | p2@ENST00000517898, p2@uc003xty.1 |
| 2.3e-22 | FFCP PHASE2:Hg19::chr8:60032478..60032492,+#_b10a6f66680495d8380b5cd0b049dc2a | p2@ENST00000517898, p2@uc003xty.1 |
| 3.81e-21 | FFCP PHASE2:Hg19::chr6:41562324..41562340,+#_652a7fa8129054e7483761a2db983e1e | p16@FOXP4 |
| 3.81e-21 | FFCP PHASE1:Hg19::chr6:41562324..41562340,+#_652a7fa8129054e7483761a2db983e1e | p16@FOXP4 |
| 4.66e-21 | FFCP PHASE1:Hg19::chr11:61634723..61634731,+#_c93caa103ac6ce3285ffc5e35d65ba9a | p@chr11:61634723..61634731, + |
| 4.66e-21 | FFCP PHASE2:Hg19::chr11:61634723..61634731,+#_c93caa103ac6ce3285ffc5e35d65ba9a | p@chr11:61634723..61634731, + |
| 1.7e-19 | FFCP PHASE2:Hg19::chr19:11306638..11306657,-#_07b26f239b56cd431e351ea5c2924b47 | p13@KANK2 |
| 1.7e-19 | FFCP PHASE1:Hg19::chr19:11306638..11306657,-#_07b26f239b56cd431e351ea5c2924b47 | p13@KANK2 |
| 3.16e-18 | FFCP PHASE1:Hg19::chr6:78171774..78171792,+#_c25dcb4f8b0d7be95c6d0bf97322ec2e | p@chr6:78171774..78171792, + |
| 3.16e-18 | FFCP PHASE2:Hg19::chr6:78171774..78171792,+#_c25dcb4f8b0d7be95c6d0bf97322ec2e | p@chr6:78171774..78171792, + |
| 6.82e-18 | FFCP PHASE1:Hg19::chr6:50787466..50787500,+#_9db70357962f6985262170f23b1e2334 | p@chr6:50787466..50787500, + |
| 6.82e-18 | FFCP PHASE2:Hg19::chr6:50787466..50787500,+#_9db70357962f6985262170f23b1e2334 | p@chr6:50787466..50787500, + |
| 8.24e-18 | FFCP PHASE1:Hg19::chr11:47279167..47279178,+#_268b3237b5e8b5a487678e4e467c800e | p10@NR1H3 |
| 8.24e-18 | FFCP PHASE2:Hg19::chr11:47279167..47279178,+#_268b3237b5e8b5a487678e4e467c800e | p10@NR1H3 |
| 1.27e-17 | FFCP PHASE1:Hg19::chr7:143079562..143079573,+#_e2e815be7d00eac1179babc198531402 | p39@ZYX |
| 1.27e-17 | FFCP PHASE2:Hg19::chr7:143079562..143079573,+#_e2e815be7d00eac1179babc198531402 | p39@ZYX |
| 1.46e-17 | FFCP PHASE2:Hg19::chr4:13379049..13379051,+#_9f2bf65d7252f71addc5d87db105c714 | p@chr4:13379049..13379051, + |
| 1.46e-17 | FFCP PHASE1:Hg19::chr4:13379049..13379051,+#_9f2bf65d7252f71addc5d87db105c714 | p@chr4:13379049..13379051, + |
| 1.88e-17 | FFCP PHASE1:Hg19::chr9:116327296..116327307,+#_de783056292766624eaa1552836c79f0 | p21@RGS3 |
| 1.88e-17 | FFCP PHASE2:Hg19::chr9:116327296..116327307,+#_de783056292766624eaa1552836c79f0 | p21@RGS3 |
| 6.47e-17 | FFCP PHASE2:Hg19::chr1:27269555..27269558,+#_dbd730104cb1ef84ef0e7342e2ccb6af | p@chr1:27269555..27269558, + |
| 6.47e-17 | FFCP PHASE1:Hg19::chr1:27269555..27269558,+#_dbd730104cb1ef84ef0e7342e2ccb6af | p@chr1:27269555..27269558, + |
| 1.45e-16 | FFCP PHASE1:Hg19::chr12:57522813..57522825,-#_552b63e7733a15c9b72652af6e94544b | p10@STAT6 |
| 1.45e-16 | FFCP PHASE2:Hg19::chr12:57522813..57522825,-#_552b63e7733a15c9b72652af6e94544b | p10@STAT6 |
| 2.33e-16 | FFCP PHASE2:Hg19::chr1:156677222..156677267,-#_ed68fb67697caf99d55eefc88dddfbde | p@chr1:156677222..156677267, - |
| 2.33e-16 | FFCP PHASE1:Hg19::chr1:156677222..156677267,-#_ed68fb67697caf99d55eefc88dddfbde | p@chr1:156677222..156677267, - |
| 3.77e-16 | FFCP PHASE2:Hg19::chr4:1167293..1167308,-#_c203674301e66b08869e45098f3fca85 | p18@SPON2 |
| 3.77e-16 | FFCP PHASE1:Hg19::chr4:1167293..1167308,-#_c203674301e66b08869e45098f3fca85 | p18@SPON2 |
| 1.78e-15 | FFCP PHASE2:Hg19::chr9:129376073..129376080,-#_e739111c559657fed44b1c6fbdf7239d | p2@ENST00000451449 |
| 1.78e-15 | FFCP PHASE1:Hg19::chr9:129376073..129376080,-#_e739111c559657fed44b1c6fbdf7239d | p2@ENST00000451449 |
| 4.8e-15 | FFCP PHASE2:Hg19::chr22:45898587..45898598,+#_0529bc77a2e21932ba3debf32636df7e | p13@FBLN1 |
| 4.8e-15 | FFCP PHASE1:Hg19::chr22:45898587..45898598,+#_0529bc77a2e21932ba3debf32636df7e | p13@FBLN1 |
| 9.41e-15 | FFCP PHASE2:Hg19::chr19:38878454..38878497,-#_b0c840d2c3383ee2a609c3649e38870e | p1@GGN |
| 9.41e-15 | FFCP PHASE1:Hg19::chr19:38878454..38878497,-#_b0c840d2c3383ee2a609c3649e38870e | p1@GGN |
| 4.04e-14 | FFCP PHASE1:Hg19::chr9:123165410..123165421,-#_e8919299e44d0fe41245068ebb4fd562 | p14@CDK5RAP2 |
| 4.04e-14 | FFCP PHASE2:Hg19::chr9:123165410..123165421,-#_e8919299e44d0fe41245068ebb4fd562 | p14@CDK5RAP2 |
| 6.62e-14 | FFCP PHASE2:Hg19::chr6:50786547..50786564,+#_f147465f7cb852d1f1f91e00ec4f0133 | p3@TFAP2B |
| 6.62e-14 | FFCP PHASE1:Hg19::chr6:50786547..50786564,+#_f147465f7cb852d1f1f91e00ec4f0133 | p3@TFAP2B |
| 7.57e-14 | FFCP PHASE1:Hg19::chr12:45904157..45904158,-#_cebdfc5a529cf0ac45ed0875ac449506 | p@chr12:45904157..45904158, - |
| 7.57e-14 | FFCP PHASE2:Hg19::chr12:45904157..45904158,-#_cebdfc5a529cf0ac45ed0875ac449506 | p@chr12:45904157..45904158, - |
| 1.37e-13 | FFCP PHASE2:Hg19::chr3:4722301..4722324,+#_b1a9c1968d2a8e676b3a9ad79ebbd892 | p@chr3:4722301..4722324, + |
| 1.37e-13 | FFCP PHASE1:Hg19::chr3:4722301..4722324,+#_b1a9c1968d2a8e676b3a9ad79ebbd892 | p@chr3:4722301..4722324, + |
| 1.54e-13 | FFCP PHASE1:Hg19::chr12:1609708..1609723,+#_fb9ba835d83cff39ebdc62eca865708f | p2@LOC100292680 |
| 1.54e-13 | FFCP PHASE2:Hg19::chr12:1609708..1609723,+#_fb9ba835d83cff39ebdc62eca865708f | p2@LOC100292680 |
| 1.55e-13 | FFCP PHASE1:Hg19::chrX:13792679..13792690,-#_efe6b5a96e0b630b7b37aac0170428c7 | p@chrX:13792679..13792690, - |
| 1.55e-13 | FFCP PHASE2:Hg19::chrX:13792679..13792690,-#_efe6b5a96e0b630b7b37aac0170428c7 | p@chrX:13792679..13792690, - |
| 1.75e-13 | FFCP PHASE1:Hg19::chr12:81102260..81102302,+#_79be7240f33f9156a562017654ea35a1 | p@chr12:81102260..81102302, + |
| 1.75e-13 | FFCP PHASE2:Hg19::chr12:81102260..81102302,+#_79be7240f33f9156a562017654ea35a1 | p@chr12:81102260..81102302, + |
| 4.17e-13 | FFCP PHASE1:Hg19::chr6:78171746..78171769,+#_d33c0ab1103775752e9037f764625d6e | p@chr6:78171746..78171769, + |
| 4.17e-13 | FFCP PHASE2:Hg19::chr6:78171746..78171769,+#_d33c0ab1103775752e9037f764625d6e | p@chr6:78171746..78171769, + |
| 4.47e-13 | FFCP PHASE1:Hg19::chr7:100425082..100425085,-#_4434d03e9e07a30063d31dcc104f9a92 | p6@EPHB4 |
| 4.47e-13 | FFCP PHASE2:Hg19::chr7:100425082..100425085,-#_4434d03e9e07a30063d31dcc104f9a92 | p6@EPHB4 |
| 5.2e-13 | FFCP PHASE2:Hg19::chr19:7580234..7580253,+#_a9bebdc9e94f5dc41054b5b595cc981a | p@chr19:7580234..7580253, + |
| 5.2e-13 | FFCP PHASE1:Hg19::chr19:7580234..7580253,+#_a9bebdc9e94f5dc41054b5b595cc981a | p@chr19:7580234..7580253, + |
| 5.73e-13 | FFCP PHASE2:Hg19::chr1:110625307..110625328,+#_7fa2ba553dac36b6f1f5266b709ee03a | p1@ENST00000554808 |
| 5.73e-13 | FFCP PHASE1:Hg19::chr1:110625307..110625328,+#_7fa2ba553dac36b6f1f5266b709ee03a | p1@ENST00000554808 |
| 7.57e-13 | FFCP PHASE2:Hg19::chr1:110613276..110613299,-#_5b726f7a394fa5692b140f4efe213948 | p2@ALX3 |
| 7.57e-13 | FFCP PHASE1:Hg19::chr1:110613276..110613299,-#_5b726f7a394fa5692b140f4efe213948 | p2@ALX3 |
| 1.28e-12 | FFCP PHASE2:Hg19::chr1:110613238..110613272,-#_e191dd3194adca2b93af9111ec4a8f9d | p1@ALX3 |
| 1.28e-12 | FFCP PHASE1:Hg19::chr1:110613238..110613272,-#_e191dd3194adca2b93af9111ec4a8f9d | p1@ALX3 |
| 1.29e-12 | FFCP PHASE2:Hg19::chr2:12246664..12246694,+#_f15430974ece7d7a0fb9bb8ba16c2482 | p1@ENST00000449986 |
| 1.29e-12 | FFCP PHASE1:Hg19::chr2:12246664..12246694,+#_f15430974ece7d7a0fb9bb8ba16c2482 | p1@ENST00000449986 |
| 2.32e-12 | FFCP PHASE2:Hg19::chr16:54962394..54962407,+#_016d4486d3ac47681bc3c2e15eeeb4d0 | p@chr16:54962394..54962407, + |
| 2.32e-12 | FFCP PHASE1:Hg19::chr16:54962394..54962407,+#_016d4486d3ac47681bc3c2e15eeeb4d0 | p@chr16:54962394..54962407, + |
| 2.32e-12 | FFCP PHASE2:Hg19::chr17:27052878..27052889,+#_016d4486d3ac47681bc3c2e15eeeb4d0 | p@chr17:27052878..27052889, + |
| 2.32e-12 | FFCP PHASE1:Hg19::chr17:27052878..27052889,+#_016d4486d3ac47681bc3c2e15eeeb4d0 | p@chr17:27052878..27052889, + |
| 3.24e-12 | FFCP PHASE2:Hg19::chr2:71206252..71206265,+#_ad84ce9af1c7d44d5dd22187fc104611 | p8@ANKRD53 |
| 3.24e-12 | FFCP PHASE1:Hg19::chr2:71206252..71206265,+#_ad84ce9af1c7d44d5dd22187fc104611 | p8@ANKRD53 |
| 3.24e-12 | FFCP PHASE2:Hg19::chr1:201798251..201798253,+#_ad84ce9af1c7d44d5dd22187fc104611 | p5@IPO9 |
| 3.24e-12 | FFCP PHASE1:Hg19::chr1:201798251..201798253,+#_ad84ce9af1c7d44d5dd22187fc104611 | p5@IPO9 |
| 3.56e-12 | FFCP PHASE2:Hg19::chr6:50786571..50786590,+#_357fa7259ed9390750283c6d553fcb3e | p2@TFAP2B |
| 3.56e-12 | FFCP PHASE1:Hg19::chr6:50786571..50786590,+#_357fa7259ed9390750283c6d553fcb3e | p2@TFAP2B |
| 3.84e-12 | FFCP PHASE1:Hg19::chr11:19619705..19619737,+#_bbf528fb1b843d6447272c1d573df887 | p@chr11:19619705..19619737, + |
| 3.84e-12 | FFCP PHASE2:Hg19::chr11:19619705..19619737,+#_bbf528fb1b843d6447272c1d573df887 | p@chr11:19619705..19619737, + |
| 3.92e-12 | FFCP PHASE2:Hg19::chr1:68851155..68851158,+#_67eccd8fd9d0d66a640d833ffbf7da38 | p@chr1:68851155..68851158, + |
| 3.92e-12 | FFCP PHASE1:Hg19::chr1:68851155..68851158,+#_67eccd8fd9d0d66a640d833ffbf7da38 | p@chr1:68851155..68851158, + |
| 4.16e-12 | FFCP PHASE2:Hg19::chr2:26972981..26973006,+#_c2817383229743832e89c83b6fe414b8 | p@chr2:26972981..26973006, + |
| 4.16e-12 | FFCP PHASE1:Hg19::chr2:26972981..26973006,+#_c2817383229743832e89c83b6fe414b8 | p@chr2:26972981..26973006, + |
| 4.39e-12 | FFCP PHASE2:Hg19::chr6:111888474..111888487,-#_bf734b9d729650b7de47a9cd4a2d63e2 | p11@TRAF3IP2 |
| 4.39e-12 | FFCP PHASE1:Hg19::chr6:111888474..111888487,-#_bf734b9d729650b7de47a9cd4a2d63e2 | p11@TRAF3IP2 |
