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{{CL
{{CL
|id=CL:0001024
|alt_id=
|name=CD34-positive, CD38-negative hematopoietic stem cell
|namespace=efo
|def="CD133-positive hematopoietic stem cell is a hematopoietic stem cell that is CD34-positive, CD90-positive, and CD133-positive." [GO_REF:0000031, GOC:add, GOC:amm, GOC:tfm, PMID:10430905, PMID:11750107, PMID:16551251, PMID:20024907, PMID:9389721]
|xref=FMA:86475
|is_a=CL:0000037
|synonym="CD133-positive hematopoietic stem cell" EXACT [PMID:16140871]
|comment=Cell markers are associated with human hematopoietic stem cells. Originally described in the dendritic cell ontology (DC_CL:0000035)(PMID: 19243617).
|comment=Cell markers are associated with human hematopoietic stem cells. Originally described in the dendritic cell ontology (DC_CL:0000035)(PMID: 19243617).
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="CD133-positive hematopoietic stem cell is a hematopoietic stem cell that is CD34-positive, CD90-positive, and CD133-positive." [GO_REF:0000031, GOC:add, GOC:amm, GOC:tfm, PMID:10430905, PMID:11750107, PMID:16551251, PMID:20024907, PMID:9389721]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0001024
|is_a=CL:0000037
|is_obsolete=
|located_in=
|located_in=
|name=CD34-positive, CD38-negative hematopoietic stem cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="CD133-positive hematopoietic stem cell" EXACT [PMID:16140871]
|union_of=
|xref=FMA:86475
}}
}}

Latest revision as of 16:39, 12 September 2014

Name:CD34-positive, CD38-negative hematopoietic stem cell
Namespace:FANTOM
Definition:"CD133-positive hematopoietic stem cell is a hematopoietic stem cell that is CD34-positive, CD90-positive, and CD133-positive." [GO_REF:0000031, GOC:add, GOC:amm, GOC:tfm, PMID:10430905, PMID:11750107, PMID:16551251, PMID:20024907, PMID:9389721]
Xrefs:
links:
FMA:86475
Synonyms: "CD133-positive hematopoietic stem cell" EXACT [PMID:16140871]
Comments:Cell markers are associated with human hematopoietic stem cells. Originally described in the dendritic cell ontology (DC_CL:0000035)(PMID: 19243617).


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000037(hematopoietic stem cell)



Children


derives from:FF:0000027 (human CD133-positive hematopoeitic stem cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0001024 (CD34-positive, CD38-negative hematopoietic stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.37e-99FFCP PHASE1:Hg19::chr1:233430709..233430711,+#_3633a1fbb2226a6fa01c5b1c3e81ba0cp@chr1:233430709..233430711, +
9.37e-99FFCP PHASE2:Hg19::chr1:233430709..233430711,+#_3633a1fbb2226a6fa01c5b1c3e81ba0cp@chr1:233430709..233430711, +
2.55e-98FFCP PHASE2:Hg19::chr5:71883899..71883903,+#_00604ee4502fd64a0b4bc4c9eb10c6fap@chr5:71883899..71883903, +
2.55e-98FFCP PHASE1:Hg19::chr5:71883899..71883903,+#_00604ee4502fd64a0b4bc4c9eb10c6fap@chr5:71883899..71883903, +
1.23e-66FFCP PHASE1:Hg19::chr10:27742148..27742150,+#_1366deb07a5ea46ac45fa876d69e12bcp@chr10:27742148..27742150, +
1.23e-66FFCP PHASE2:Hg19::chr10:27742148..27742150,+#_1366deb07a5ea46ac45fa876d69e12bcp@chr10:27742148..27742150, +
2.39e-66FFCP PHASE2:Hg19::chr15:78594519..78594524,-#_05254cd99738906473cc0e95f8c5f7a5p@chr15:78594519..78594524, -
2.39e-66FFCP PHASE1:Hg19::chr15:78594519..78594524,-#_05254cd99738906473cc0e95f8c5f7a5p@chr15:78594519..78594524, -
4.66e-66FFCP PHASE2:Hg19::chr7:142245972..142246006,-#_20d79381ab025f54796705bcc477a76fp1@TRBV8-2
4.66e-66FFCP PHASE1:Hg19::chr19:855581..855593,+#_20d79381ab025f54796705bcc477a76fp4@ELANE
4.66e-66FFCP PHASE1:Hg19::chr10:73830227..73830232,-#_20d79381ab025f54796705bcc477a76fp26@SPOCK2
4.66e-66FFCP PHASE2:Hg19::chr19:855581..855593,+#_20d79381ab025f54796705bcc477a76fp4@ELANE
4.66e-66FFCP PHASE2:Hg19::chr10:73830227..73830232,-#_20d79381ab025f54796705bcc477a76fp26@SPOCK2
4.66e-66FFCP PHASE1:Hg19::chr7:142245972..142246006,-#_20d79381ab025f54796705bcc477a76fp1@TRBV8-2
1.46e-50FFCP PHASE1:Hg19::chr6:142702634..142702638,+#_8b0fd7ba14947de3e1df4143bcd19738p@chr6:142702634..142702638, +
1.46e-50FFCP PHASE2:Hg19::chr6:142702634..142702638,+#_8b0fd7ba14947de3e1df4143bcd19738p@chr6:142702634..142702638, +
1.46e-50FFCP PHASE1:Hg19::chr20:3064096..3064101,-#_8b0fd7ba14947de3e1df4143bcd19738p@chr20:3064096..3064101, -
1.46e-50FFCP PHASE2:Hg19::chr20:3064096..3064101,-#_8b0fd7ba14947de3e1df4143bcd19738p@chr20:3064096..3064101, -
3.99e-50FFCP PHASE2:Hg19::chr14:47722173..47722192,-#_d47cbcf2331d7d20d1aa9860bfdec54dp@chr14:47722173..47722192, -
3.99e-50FFCP PHASE1:Hg19::chr5:61874696..61874701,+#_d47cbcf2331d7d20d1aa9860bfdec54dp3@LRRC70
3.99e-50FFCP PHASE1:Hg19::chr10:98066533..98066541,-#_d47cbcf2331d7d20d1aa9860bfdec54dp@chr10:98066533..98066541, -
3.99e-50FFCP PHASE2:Hg19::chr5:61874696..61874701,+#_d47cbcf2331d7d20d1aa9860bfdec54dp3@LRRC70
3.99e-50FFCP PHASE1:Hg19::chr12:78870953..78870955,+#_d47cbcf2331d7d20d1aa9860bfdec54dp@chr12:78870953..78870955, +
3.99e-50FFCP PHASE1:Hg19::chr14:47722173..47722192,-#_d47cbcf2331d7d20d1aa9860bfdec54dp@chr14:47722173..47722192, -
3.99e-50FFCP PHASE2:Hg19::chr12:78870953..78870955,+#_d47cbcf2331d7d20d1aa9860bfdec54dp@chr12:78870953..78870955, +
3.99e-50FFCP PHASE2:Hg19::chr10:98066533..98066541,-#_d47cbcf2331d7d20d1aa9860bfdec54dp@chr10:98066533..98066541, -
6.58e-50FFCP PHASE1:Hg19::chr19:21861119..21861122,-#_fda41f41404523268973b3dafe89d518p@chr19:21861119..21861122, -
6.58e-50FFCP PHASE2:Hg19::chr19:21861119..21861122,-#_fda41f41404523268973b3dafe89d518p@chr19:21861119..21861122, -
6.62e-41FFCP PHASE1:Hg19::chr5:138728827..138728838,+#_b226183432abffb721f9a2400015ecdap@chr5:138728827..138728838, +
6.62e-41FFCP PHASE2:Hg19::chr5:138728827..138728838,+#_b226183432abffb721f9a2400015ecdap@chr5:138728827..138728838, +
6.62e-41FFCP PHASE1:Hg19::chr20:3064138..3064143,-#_b226183432abffb721f9a2400015ecdap@chr20:3064138..3064143, -
6.62e-41FFCP PHASE2:Hg19::chr20:3064138..3064143,-#_b226183432abffb721f9a2400015ecdap@chr20:3064138..3064143, -
9.91e-41FFCP PHASE1:Hg19::chr20:3064148..3064164,-#_2db73de5a55984b328e2225982b88de4p@chr20:3064148..3064164, -
9.91e-41FFCP PHASE2:Hg19::chr20:3064148..3064164,-#_2db73de5a55984b328e2225982b88de4p@chr20:3064148..3064164, -
9.91e-41FFCP PHASE2:Hg19::chr12:7622262..7622272,-#_2db73de5a55984b328e2225982b88de4p@chr12:7622262..7622272, -
9.91e-41FFCP PHASE1:Hg19::chr20:3064211..3064222,-#_2db73de5a55984b328e2225982b88de4p@chr20:3064211..3064222, -
9.91e-41FFCP PHASE2:Hg19::chr20:3064211..3064222,-#_2db73de5a55984b328e2225982b88de4p@chr20:3064211..3064222, -
9.91e-41FFCP PHASE2:Hg19::chr14:106733172..106733175,+#_2db73de5a55984b328e2225982b88de4p1@AK126233
9.91e-41FFCP PHASE1:Hg19::chr14:106733172..106733175,+#_2db73de5a55984b328e2225982b88de4p1@AK126233
9.91e-41FFCP PHASE1:Hg19::chr12:7622262..7622272,-#_2db73de5a55984b328e2225982b88de4p@chr12:7622262..7622272, -
1.48e-40FFCP PHASE1:Hg19::chr13:107448278..107448283,+#_d26b70cf0438f1b3a415a6c4cd71ddacp@chr13:107448278..107448283, +
1.48e-40FFCP PHASE2:Hg19::chr16:28914360..28914369,+#_d26b70cf0438f1b3a415a6c4cd71ddacp@chr16:28914360..28914369, +
1.48e-40FFCP PHASE1:Hg19::chr14:106331806..106331813,-#_d26b70cf0438f1b3a415a6c4cd71ddacp2@IGHD7-27
1.48e-40FFCP PHASE2:Hg19::chr13:107448278..107448283,+#_d26b70cf0438f1b3a415a6c4cd71ddacp@chr13:107448278..107448283, +
1.48e-40FFCP PHASE1:Hg19::chr16:28914360..28914369,+#_d26b70cf0438f1b3a415a6c4cd71ddacp@chr16:28914360..28914369, +
1.48e-40FFCP PHASE2:Hg19::chr14:106331806..106331813,-#_d26b70cf0438f1b3a415a6c4cd71ddacp2@IGHD7-27
2.21e-40FFCP PHASE1:Hg19::chr16:15776378..15776383,+#_0707a6d443585421da0b5e23381aea10p@chr16:15776378..15776383, +
2.21e-40FFCP PHASE1:Hg19::chr15:99819658..99819672,+#_0707a6d443585421da0b5e23381aea10p@chr15:99819658..99819672, +
2.21e-40FFCP PHASE2:Hg19::chr16:15776378..15776383,+#_0707a6d443585421da0b5e23381aea10p@chr16:15776378..15776383, +
2.21e-40FFCP PHASE2:Hg19::chr15:99819658..99819672,+#_0707a6d443585421da0b5e23381aea10p@chr15:99819658..99819672, +
3.3e-40FFCP PHASE2:Hg19::chr17:56357324..56357333,-#_49f32b7de24c9c7d2ece9524d8c96155p@chr17:56357324..56357333, -
3.3e-40FFCP PHASE1:Hg19::chr12:69754055..69754064,+#_49f32b7de24c9c7d2ece9524d8c96155p@chr12:69754055..69754064, +
3.3e-40FFCP PHASE2:Hg19::chr12:69754055..69754064,+#_49f32b7de24c9c7d2ece9524d8c96155p@chr12:69754055..69754064, +
3.3e-40FFCP PHASE1:Hg19::chr17:56357324..56357333,-#_49f32b7de24c9c7d2ece9524d8c96155p@chr17:56357324..56357333, -
1.84e-34FFCP PHASE2:Hg19::chr19:24009879..24009892,+#_25a8cec4da5559800916887e18a00fafp2@RPSAP58
1.84e-34FFCP PHASE1:Hg19::chr14:56683795..56683803,+#_25a8cec4da5559800916887e18a00fafp@chr14:56683795..56683803, +
1.84e-34FFCP PHASE1:Hg19::chr1:214614555..214614558,-#_25a8cec4da5559800916887e18a00fafp@chr1:214614555..214614558, -
1.84e-34FFCP PHASE2:Hg19::chr14:56683795..56683803,+#_25a8cec4da5559800916887e18a00fafp@chr14:56683795..56683803, +
1.84e-34FFCP PHASE2:Hg19::chr1:214614555..214614558,-#_25a8cec4da5559800916887e18a00fafp@chr1:214614555..214614558, -
1.84e-34FFCP PHASE1:Hg19::chr19:24009879..24009892,+#_25a8cec4da5559800916887e18a00fafp2@RPSAP58
2.58e-34FFCP PHASE2:Hg19::chr2:43424646..43424671,-#_23b347ca70652005cc91f850059eb041p@chr2:43424646..43424671, -
2.58e-34FFCP PHASE2:Hg19::chr19:19972028..19972035,-#_23b347ca70652005cc91f850059eb041p@chr19:19972028..19972035, -
2.58e-34FFCP PHASE1:Hg19::chr14:106332629..106332637,-#_23b347ca70652005cc91f850059eb041p@chr14:106332629..106332637, -
2.58e-34FFCP PHASE1:Hg19::chr9:132807451..132807460,+#_23b347ca70652005cc91f850059eb041p@chr9:132807451..132807460, +
2.58e-34FFCP PHASE2:Hg19::chr9:132807451..132807460,+#_23b347ca70652005cc91f850059eb041p@chr9:132807451..132807460, +
2.58e-34FFCP PHASE1:Hg19::chr4:2916272..2916283,+#_23b347ca70652005cc91f850059eb041p38@ADD1
2.58e-34FFCP PHASE2:Hg19::chr14:106332629..106332637,-#_23b347ca70652005cc91f850059eb041p@chr14:106332629..106332637, -
2.58e-34FFCP PHASE2:Hg19::chr4:2916272..2916283,+#_23b347ca70652005cc91f850059eb041p38@ADD1
2.58e-34FFCP PHASE1:Hg19::chr2:43424646..43424671,-#_23b347ca70652005cc91f850059eb041p@chr2:43424646..43424671, -
2.58e-34FFCP PHASE1:Hg19::chr19:19972028..19972035,-#_23b347ca70652005cc91f850059eb041p@chr19:19972028..19972035, -
3.61e-34FFCP PHASE1:Hg19::chr1:170042665..170042670,+#_4e8bf1f308cb595271824fc1f2d3d949p@chr1:170042665..170042670, +
3.61e-34FFCP PHASE2:Hg19::chr14:106332598..106332607,-#_4e8bf1f308cb595271824fc1f2d3d949p@chr14:106332598..106332607, -
3.61e-34FFCP PHASE2:Hg19::chr1:170042665..170042670,+#_4e8bf1f308cb595271824fc1f2d3d949p@chr1:170042665..170042670, +
3.61e-34FFCP PHASE2:Hg19::chr15:50367664..50367673,-#_4e8bf1f308cb595271824fc1f2d3d949p@chr15:50367664..50367673, -
3.61e-34FFCP PHASE1:Hg19::chr15:50367664..50367673,-#_4e8bf1f308cb595271824fc1f2d3d949p@chr15:50367664..50367673, -
3.61e-34FFCP PHASE1:Hg19::chr14:106332598..106332607,-#_4e8bf1f308cb595271824fc1f2d3d949p@chr14:106332598..106332607, -
5.05e-34FFCP PHASE1:Hg19::chr3:22414302..22414311,-#_cfee92af5e3ad81d696790b2e1c81dbbp14@ZNF385D
5.05e-34FFCP PHASE1:Hg19::chr6:110797642..110797655,-#_cfee92af5e3ad81d696790b2e1c81dbbp5@SLC22A16
5.05e-34FFCP PHASE2:Hg19::chr3:22414302..22414311,-#_cfee92af5e3ad81d696790b2e1c81dbbp14@ZNF385D
5.05e-34FFCP PHASE2:Hg19::chr6:110797642..110797655,-#_cfee92af5e3ad81d696790b2e1c81dbbp5@SLC22A16
7.06e-34FFCP PHASE1:Hg19::chr17:56348026..56348034,-#_aa8191baaf45ec3b890a6c607cc78668p@chr17:56348026..56348034, -
7.06e-34FFCP PHASE1:Hg19::chr17:56357337..56357342,-#_aa8191baaf45ec3b890a6c607cc78668p@chr17:56357337..56357342, -
7.06e-34FFCP PHASE1:Hg19::chr17:56357123..56357132,-#_aa8191baaf45ec3b890a6c607cc78668p@chr17:56357123..56357132, -
7.06e-34FFCP PHASE2:Hg19::chr14:106365436..106365443,+#_aa8191baaf45ec3b890a6c607cc78668p@chr14:106365436..106365443, +
7.06e-34FFCP PHASE2:Hg19::chrX:30607165..30607171,+#_aa8191baaf45ec3b890a6c607cc78668p@chrX:30607165..30607171, +
7.06e-34FFCP PHASE2:Hg19::chr17:56348026..56348034,-#_aa8191baaf45ec3b890a6c607cc78668p@chr17:56348026..56348034, -
7.06e-34FFCP PHASE2:Hg19::chr17:56357337..56357342,-#_aa8191baaf45ec3b890a6c607cc78668p@chr17:56357337..56357342, -
7.06e-34FFCP PHASE1:Hg19::chr3:128721079..128721099,-#_aa8191baaf45ec3b890a6c607cc78668p@chr3:128721079..128721099, -
7.06e-34FFCP PHASE2:Hg19::chr17:56357123..56357132,-#_aa8191baaf45ec3b890a6c607cc78668p@chr17:56357123..56357132, -
7.06e-34FFCP PHASE2:Hg19::chr3:128721079..128721099,-#_aa8191baaf45ec3b890a6c607cc78668p@chr3:128721079..128721099, -
7.06e-34FFCP PHASE1:Hg19::chr6:156941231..156941245,-#_aa8191baaf45ec3b890a6c607cc78668p@chr6:156941231..156941245, -
7.06e-34FFCP PHASE1:Hg19::chr14:106365436..106365443,+#_aa8191baaf45ec3b890a6c607cc78668p@chr14:106365436..106365443, +
7.06e-34FFCP PHASE2:Hg19::chr6:156941231..156941245,-#_aa8191baaf45ec3b890a6c607cc78668p@chr6:156941231..156941245, -
7.06e-34FFCP PHASE2:Hg19::chr11:67415073..67415078,-#_aa8191baaf45ec3b890a6c607cc78668p6@ACY3
7.06e-34FFCP PHASE1:Hg19::chr11:67415073..67415078,-#_aa8191baaf45ec3b890a6c607cc78668p6@ACY3
7.06e-34FFCP PHASE1:Hg19::chrX:30607165..30607171,+#_aa8191baaf45ec3b890a6c607cc78668p@chrX:30607165..30607171, +
9.85e-34FFCP PHASE2:Hg19::chr17:56353056..56353065,-#_6526742abca81f11d86a43cf62fb792cp@chr17:56353056..56353065, -
9.85e-34FFCP PHASE2:Hg19::chr3:159756844..159756848,-#_6526742abca81f11d86a43cf62fb792cp@chr3:159756844..159756848, -
9.85e-34FFCP PHASE2:Hg19::chr2:127851262..127851291,-#_6526742abca81f11d86a43cf62fb792cp@chr2:127851262..127851291, -
9.85e-34FFCP PHASE1:Hg19::chr17:56352942..56352955,-#_6526742abca81f11d86a43cf62fb792cp@chr17:56352942..56352955, -

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