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{{CL
{{CL
|id=CL:0001016
|alt_id=
|name=immature CD1a-positive Langerhans cell
|namespace=efo
|def="Immature CD1a-positive Langerhans cell is a CD1a-positive Langerhans cell that is CD80-low, CD86-low, and MHCII-low." [GO_REF:0000031, GOC:amm, GOC:tfm, PMID:17850486]
|xref=
|is_a=CL:0000840;;CL:0001014
|synonym=
|comment=Originally described in the dendritic cell ontology (DC_CL:0000028)(PMID: 19243617).
|comment=Originally described in the dendritic cell ontology (DC_CL:0000028)(PMID: 19243617).
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Immature CD1a-positive Langerhans cell is a CD1a-positive Langerhans cell that is CD80-low, CD86-low, and MHCII-low." [GO_REF:0000031, GOC:amm, GOC:tfm, PMID:17850486]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0001016
|is_a=CL:0000840 ;;CL:0001014
|is_obsolete=
|located_in=
|located_in=
|name=immature CD1a-positive Langerhans cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:39, 12 September 2014

Name:immature CD1a-positive Langerhans cell
Namespace:FANTOM
Definition:"Immature CD1a-positive Langerhans cell is a CD1a-positive Langerhans cell that is CD80-low, CD86-low, and MHCII-low." [GO_REF:0000031, GOC:amm, GOC:tfm, PMID:17850486]
Comments:Originally described in the dendritic cell ontology (DC_CL:0000028)(PMID: 19243617).


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000840(immature conventional dendritic cell),CL:0001014(CD1a-positive Langerhans cell)



Children


derives from:FF:0011135 (human immature langerhans cells sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0001016 (immature CD1a-positive Langerhans cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr19:35485281..35485283,+#_38df4ab62c10c4d40998aa363e648011p20@GRAMD1A
3.29e-195FFCP PHASE1:Hg19::chr13:42969602..42969625,-#_38df4ab62c10c4d40998aa363e648011p@chr13:42969602..42969625, -
3.29e-195FFCP PHASE2:Hg19::chr2:242169538..242169541,-#_38df4ab62c10c4d40998aa363e648011p71@HDLBP
3.29e-195FFCP PHASE1:Hg19::chr13:100018656..100018672,+#_38df4ab62c10c4d40998aa363e648011p@chr13:100018656..100018672, +
3.29e-195FFCP PHASE1:Hg19::chr2:242169538..242169541,-#_38df4ab62c10c4d40998aa363e648011p71@HDLBP
3.29e-195FFCP PHASE2:Hg19::chr19:6063965..6063994,+#_38df4ab62c10c4d40998aa363e648011p@chr19:6063965..6063994, +
3.29e-195FFCP PHASE1:Hg19::chr1:117087402..117087404,+#_38df4ab62c10c4d40998aa363e648011p@chr1:117087402..117087404, +
3.29e-195FFCP PHASE1:Hg19::chr16:33722353..33722359,+#_38df4ab62c10c4d40998aa363e648011p@chr16:33722353..33722359, +
3.29e-195FFCP PHASE1:Hg19::chr10:95326623..95326652,+#_38df4ab62c10c4d40998aa363e648011p3@O3FAR1
3.29e-195FFCP PHASE2:Hg19::chr20:62482031..62482052,-#_38df4ab62c10c4d40998aa363e648011p@chr20:62482031..62482052, -
3.29e-195FFCP PHASE1:Hg19::chr20:44639733..44639737,+#_38df4ab62c10c4d40998aa363e648011p@chr20:44639733..44639737, +
3.29e-195FFCP PHASE2:Hg19::chr9:8384123..8384141,-#_38df4ab62c10c4d40998aa363e648011p@chr9:8384123..8384141, -
3.29e-195FFCP PHASE1:Hg19::chr9:8384123..8384141,-#_38df4ab62c10c4d40998aa363e648011p@chr9:8384123..8384141, -
3.29e-195FFCP PHASE1:Hg19::chr11:109958698..109958703,-#_38df4ab62c10c4d40998aa363e648011p@chr11:109958698..109958703, -
3.29e-195FFCP PHASE1:Hg19::chr1:229182544..229182560,-#_38df4ab62c10c4d40998aa363e648011p@chr1:229182544..229182560, -
3.29e-195FFCP PHASE1:Hg19::chr18:53545728..53545733,+#_38df4ab62c10c4d40998aa363e648011p@chr18:53545728..53545733, +
3.29e-195FFCP PHASE1:Hg19::chr6:4337610..4337616,+#_38df4ab62c10c4d40998aa363e648011p@chr6:4337610..4337616, +
3.29e-195FFCP PHASE2:Hg19::chr2:71057780..71057794,-#_38df4ab62c10c4d40998aa363e648011p@chr2:71057780..71057794, -
3.29e-195FFCP PHASE2:Hg19::chr18:53545728..53545733,+#_38df4ab62c10c4d40998aa363e648011p@chr18:53545728..53545733, +
3.29e-195FFCP PHASE2:Hg19::chr6:4337610..4337616,+#_38df4ab62c10c4d40998aa363e648011p@chr6:4337610..4337616, +
3.29e-195FFCP PHASE1:Hg19::chr2:71057780..71057794,-#_38df4ab62c10c4d40998aa363e648011p@chr2:71057780..71057794, -
3.29e-195FFCP PHASE2:Hg19::chr20:1762918..1762921,-#_38df4ab62c10c4d40998aa363e648011p@chr20:1762918..1762921, -
3.29e-195FFCP PHASE1:Hg19::chr12:112587704..112587710,+#_38df4ab62c10c4d40998aa363e648011p@chr12:112587704..112587710, +
3.29e-195FFCP PHASE2:Hg19::chr19:35485281..35485283,+#_38df4ab62c10c4d40998aa363e648011p20@GRAMD1A
3.29e-195FFCP PHASE1:Hg19::chr1:229182571..229182583,-#_38df4ab62c10c4d40998aa363e648011p@chr1:229182571..229182583, -
3.29e-195FFCP PHASE1:Hg19::chr18:53545759..53545802,+#_38df4ab62c10c4d40998aa363e648011p@chr18:53545759..53545802, +
3.29e-195FFCP PHASE2:Hg19::chr2:71057873..71057874,-#_38df4ab62c10c4d40998aa363e648011p@chr2:71057873..71057874, -
3.29e-195FFCP PHASE2:Hg19::chr18:53545759..53545802,+#_38df4ab62c10c4d40998aa363e648011p@chr18:53545759..53545802, +
3.29e-195FFCP PHASE1:Hg19::chr2:71057873..71057874,-#_38df4ab62c10c4d40998aa363e648011p@chr2:71057873..71057874, -
3.29e-195FFCP PHASE2:Hg19::chr1:117087402..117087404,+#_38df4ab62c10c4d40998aa363e648011p@chr1:117087402..117087404, +
3.29e-195FFCP PHASE2:Hg19::chr2:135821386..135821432,+#_38df4ab62c10c4d40998aa363e648011p@chr2:135821386..135821432, +
3.29e-195FFCP PHASE1:Hg19::chr2:135821386..135821432,+#_38df4ab62c10c4d40998aa363e648011p@chr2:135821386..135821432, +
3.29e-195FFCP PHASE1:Hg19::chr7:111726632..111726641,-#_38df4ab62c10c4d40998aa363e648011p@chr7:111726632..111726641, -
3.29e-195FFCP PHASE2:Hg19::chr6:33084930..33084937,+#_38df4ab62c10c4d40998aa363e648011p@chr6:33084930..33084937, +
3.29e-195FFCP PHASE1:Hg19::chr6:33084930..33084937,+#_38df4ab62c10c4d40998aa363e648011p@chr6:33084930..33084937, +
3.29e-195FFCP PHASE2:Hg19::chr14:69223811..69223817,+#_38df4ab62c10c4d40998aa363e648011p@chr14:69223811..69223817, +
3.29e-195FFCP PHASE2:Hg19::chr20:44639733..44639737,+#_38df4ab62c10c4d40998aa363e648011p@chr20:44639733..44639737, +
3.29e-195FFCP PHASE2:Hg19::chr1:229182544..229182560,-#_38df4ab62c10c4d40998aa363e648011p@chr1:229182544..229182560, -
3.29e-195FFCP PHASE2:Hg19::chr10:81701830..81701837,-#_38df4ab62c10c4d40998aa363e648011p@chr10:81701830..81701837, -
3.29e-195FFCP PHASE1:Hg19::chr18:46523734..46523740,+#_38df4ab62c10c4d40998aa363e648011p@chr18:46523734..46523740, +
3.29e-195FFCP PHASE2:Hg19::chr10:95326623..95326652,+#_38df4ab62c10c4d40998aa363e648011p3@O3FAR1
3.29e-195FFCP PHASE2:Hg19::chr11:109958698..109958703,-#_38df4ab62c10c4d40998aa363e648011p@chr11:109958698..109958703, -
3.29e-195FFCP PHASE2:Hg19::chr2:71058922..71058927,-#_38df4ab62c10c4d40998aa363e648011p@chr2:71058922..71058927, -
3.29e-195FFCP PHASE2:Hg19::chr7:111726632..111726641,-#_38df4ab62c10c4d40998aa363e648011p@chr7:111726632..111726641, -
3.29e-195FFCP PHASE1:Hg19::chr2:71058922..71058927,-#_38df4ab62c10c4d40998aa363e648011p@chr2:71058922..71058927, -
3.29e-195FFCP PHASE1:Hg19::chr17:817943..817953,-#_38df4ab62c10c4d40998aa363e648011p@chr17:817943..817953, -
3.29e-195FFCP PHASE2:Hg19::chr17:817943..817953,-#_38df4ab62c10c4d40998aa363e648011p@chr17:817943..817953, -
3.29e-195FFCP PHASE2:Hg19::chr3:7961529..7961534,-#_38df4ab62c10c4d40998aa363e648011p@chr3:7961529..7961534, -
3.29e-195FFCP PHASE1:Hg19::chr3:7961529..7961534,-#_38df4ab62c10c4d40998aa363e648011p@chr3:7961529..7961534, -
3.29e-195FFCP PHASE1:Hg19::chr19:6063965..6063994,+#_38df4ab62c10c4d40998aa363e648011p@chr19:6063965..6063994, +
3.29e-195FFCP PHASE1:Hg19::chr7:20479783..20479785,-#_38df4ab62c10c4d40998aa363e648011p@chr7:20479783..20479785, -
3.29e-195FFCP PHASE1:Hg19::chr6:10529918..10529924,+#_38df4ab62c10c4d40998aa363e648011p31@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr13:42969602..42969625,-#_38df4ab62c10c4d40998aa363e648011p@chr13:42969602..42969625, -
3.29e-195FFCP PHASE2:Hg19::chr7:20479783..20479785,-#_38df4ab62c10c4d40998aa363e648011p@chr7:20479783..20479785, -
3.29e-195FFCP PHASE2:Hg19::chr12:112587704..112587710,+#_38df4ab62c10c4d40998aa363e648011p@chr12:112587704..112587710, +
3.29e-195FFCP PHASE2:Hg19::chr13:100018656..100018672,+#_38df4ab62c10c4d40998aa363e648011p@chr13:100018656..100018672, +
3.29e-195FFCP PHASE2:Hg19::chr6:10529918..10529924,+#_38df4ab62c10c4d40998aa363e648011p31@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr1:229182571..229182583,-#_38df4ab62c10c4d40998aa363e648011p@chr1:229182571..229182583, -
3.29e-195FFCP PHASE2:Hg19::chr18:46523734..46523740,+#_38df4ab62c10c4d40998aa363e648011p@chr18:46523734..46523740, +
3.29e-195FFCP PHASE1:Hg19::chr20:62482031..62482052,-#_38df4ab62c10c4d40998aa363e648011p@chr20:62482031..62482052, -
3.29e-195FFCP PHASE1:Hg19::chr10:81701830..81701837,-#_38df4ab62c10c4d40998aa363e648011p@chr10:81701830..81701837, -
3.29e-195FFCP PHASE2:Hg19::chr8:21039080..21039110,+#_38df4ab62c10c4d40998aa363e648011p@chr8:21039080..21039110, +
3.29e-195FFCP PHASE1:Hg19::chr8:21039080..21039110,+#_38df4ab62c10c4d40998aa363e648011p@chr8:21039080..21039110, +
3.29e-195FFCP PHASE2:Hg19::chr16:33722353..33722359,+#_38df4ab62c10c4d40998aa363e648011p@chr16:33722353..33722359, +
3.29e-195FFCP PHASE1:Hg19::chr14:69223811..69223817,+#_38df4ab62c10c4d40998aa363e648011p@chr14:69223811..69223817, +
3.29e-195FFCP PHASE1:Hg19::chr20:1762918..1762921,-#_38df4ab62c10c4d40998aa363e648011p@chr20:1762918..1762921, -
3.29e-195FFCP PHASE2:Hg19::chr3:7961538..7961548,-#_38df4ab62c10c4d40998aa363e648011p@chr3:7961538..7961548, -
3.29e-195FFCP PHASE1:Hg19::chr3:7961538..7961548,-#_38df4ab62c10c4d40998aa363e648011p@chr3:7961538..7961548, -
4.61e-131FFCP PHASE1:Hg19::chr1:229182494..229182507,-#_090a05b372a6d8865e4833dea3dc53f2p@chr1:229182494..229182507, -
4.61e-131FFCP PHASE1:Hg19::chr10:97592419..97592428,+#_090a05b372a6d8865e4833dea3dc53f2p@chr10:97592419..97592428, +
4.61e-131FFCP PHASE1:Hg19::chr12:322653..322665,-#_090a05b372a6d8865e4833dea3dc53f2p8@SLC6A12
4.61e-131FFCP PHASE2:Hg19::chr19:35481583..35481590,-#_090a05b372a6d8865e4833dea3dc53f2p@chr19:35481583..35481590, -
4.61e-131FFCP PHASE2:Hg19::chr2:191756900..191756912,+#_090a05b372a6d8865e4833dea3dc53f2p@chr2:191756900..191756912, +
4.61e-131FFCP PHASE2:Hg19::chr16:10953616..10953637,+#_090a05b372a6d8865e4833dea3dc53f2p@chr16:10953616..10953637, +
4.61e-131FFCP PHASE1:Hg19::chr2:191756900..191756912,+#_090a05b372a6d8865e4833dea3dc53f2p@chr2:191756900..191756912, +
4.61e-131FFCP PHASE1:Hg19::chr1:157926828..157926838,+#_090a05b372a6d8865e4833dea3dc53f2p@chr1:157926828..157926838, +
4.61e-131FFCP PHASE1:Hg19::chr11:12228326..12228332,+#_090a05b372a6d8865e4833dea3dc53f2p@chr11:12228326..12228332, +
4.61e-131FFCP PHASE1:Hg19::chr11:109959243..109959256,+#_090a05b372a6d8865e4833dea3dc53f2p@chr11:109959243..109959256, +
4.61e-131FFCP PHASE2:Hg19::chr7:55594397..55594400,+#_090a05b372a6d8865e4833dea3dc53f2p@chr7:55594397..55594400, +
4.61e-131FFCP PHASE1:Hg19::chr7:55594397..55594400,+#_090a05b372a6d8865e4833dea3dc53f2p@chr7:55594397..55594400, +
4.61e-131FFCP PHASE2:Hg19::chr1:229182494..229182507,-#_090a05b372a6d8865e4833dea3dc53f2p@chr1:229182494..229182507, -
4.61e-131FFCP PHASE1:Hg19::chr8:39806514..39806522,+#_090a05b372a6d8865e4833dea3dc53f2p3@IDO2
4.61e-131FFCP PHASE2:Hg19::chr2:64587249..64587257,-#_090a05b372a6d8865e4833dea3dc53f2p@chr2:64587249..64587257, -
4.61e-131FFCP PHASE1:Hg19::chr2:64587249..64587257,-#_090a05b372a6d8865e4833dea3dc53f2p@chr2:64587249..64587257, -
4.61e-131FFCP PHASE2:Hg19::chr8:39806514..39806522,+#_090a05b372a6d8865e4833dea3dc53f2p3@IDO2
4.61e-131FFCP PHASE2:Hg19::chr8:62629856..62629862,+#_090a05b372a6d8865e4833dea3dc53f2p@chr8:62629856..62629862, +
4.61e-131FFCP PHASE1:Hg19::chr8:62629856..62629862,+#_090a05b372a6d8865e4833dea3dc53f2p@chr8:62629856..62629862, +
4.61e-131FFCP PHASE1:Hg19::chr19:6063658..6063670,-#_090a05b372a6d8865e4833dea3dc53f2p@chr19:6063658..6063670, -
4.61e-131FFCP PHASE2:Hg19::chr12:322653..322665,-#_090a05b372a6d8865e4833dea3dc53f2p8@SLC6A12
4.61e-131FFCP PHASE1:Hg19::chr16:10953616..10953637,+#_090a05b372a6d8865e4833dea3dc53f2p@chr16:10953616..10953637, +
4.61e-131FFCP PHASE2:Hg19::chr2:235214861..235214870,+#_090a05b372a6d8865e4833dea3dc53f2p@chr2:235214861..235214870, +
4.61e-131FFCP PHASE1:Hg19::chr2:235214861..235214870,+#_090a05b372a6d8865e4833dea3dc53f2p@chr2:235214861..235214870, +
4.61e-131FFCP PHASE2:Hg19::chr10:97592419..97592428,+#_090a05b372a6d8865e4833dea3dc53f2p@chr10:97592419..97592428, +
4.61e-131FFCP PHASE2:Hg19::chr2:128408404..128408428,-#_090a05b372a6d8865e4833dea3dc53f2p34@LIMS2
4.61e-131FFCP PHASE1:Hg19::chr2:128408404..128408428,-#_090a05b372a6d8865e4833dea3dc53f2p34@LIMS2
4.61e-131FFCP PHASE2:Hg19::chr9:8384168..8384183,-#_090a05b372a6d8865e4833dea3dc53f2p@chr9:8384168..8384183, -
4.61e-131FFCP PHASE2:Hg19::chr6:32729634..32729642,-#_090a05b372a6d8865e4833dea3dc53f2p2@M95729
4.61e-131FFCP PHASE1:Hg19::chr9:8384168..8384183,-#_090a05b372a6d8865e4833dea3dc53f2p@chr9:8384168..8384183, -
4.61e-131FFCP PHASE1:Hg19::chr6:32729634..32729642,-#_090a05b372a6d8865e4833dea3dc53f2p2@M95729
4.61e-131FFCP PHASE2:Hg19::chr1:157926828..157926838,+#_090a05b372a6d8865e4833dea3dc53f2p@chr1:157926828..157926838, +

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