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{{CL
{{CL
|id=CL:0000818
|alt_id=
|name=transitional stage B cell
|namespace=efo
|def="An immature B cell of an intermediate stage between the pre-B cell stage and the mature naive stage with the phenotype surface IgM-positive and CD19-positive, and are subject to the process of B cell selection. A transitional B cell migrates from the bone marrow into the peripheral circulation, and then to the spleen." [GO_REF:0000031, GOC:add, ISBN:0781735149, PMID:12810111]
|xref=
|is_a=CL:0000236
|synonym="T1 B cell" NARROW [];;"T2 B cell" NARROW [];;"T3 B cell" NARROW [];;"transitional stage B lymphocyte" EXACT [];;"transitional stage B-cell" EXACT [];;"transitional stage B-lymphocyte" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An immature B cell of an intermediate stage between the pre-B cell stage and the mature naive stage with the phenotype surface IgM-positive and CD19-positive, and are subject to the process of B cell selection. A transitional B cell migrates from the bone marrow into the peripheral circulation, and then to the spleen." [GO_REF:0000031, GOC:add, ISBN:0781735149, PMID:12810111]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0000816
|develops_from=CL:0000816
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000818
|is_a=CL:0000236
|is_obsolete=
|located_in=
|located_in=
|name=transitional stage B cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="T1 B cell" NARROW [];;"T2 B cell" NARROW [];;"T3 B cell" NARROW [];;"transitional stage B lymphocyte" EXACT [];;"transitional stage B-cell" EXACT [];;"transitional stage B-lymphocyte" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:37, 12 September 2014

Name:transitional stage B cell
Namespace:FANTOM
Definition:"An immature B cell of an intermediate stage between the pre-B cell stage and the mature naive stage with the phenotype surface IgM-positive and CD19-positive, and are subject to the process of B cell selection. A transitional B cell migrates from the bone marrow into the peripheral circulation, and then to the spleen." [GO_REF:0000031, GOC:add, ISBN:0781735149, PMID:12810111]
Synonyms: "T1 B cell" NARROW []
"T2 B cell" NARROW []
"T3 B cell" NARROW []
"transitional stage B lymphocyte" EXACT []
"transitional stage B-cell" EXACT []
"transitional stage B-lymphocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000236(B cell)
develops_from:CL:0000816(immature B cell)



Children


disjoint from:CL:0000785 (mature B cell)
develops from:CL:0000785 (mature B cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000818 (transitional stage B cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr21:20752617..20752622,-#_0840a092d77f3990a2866b109d5efc93p@chr21:20752617..20752622, -
1.55e-98FFCP PHASE1:Hg19::chr3:178947187..178947192,+#_0840a092d77f3990a2866b109d5efc93p@chr3:178947187..178947192, +
1.55e-98FFCP PHASE2:Hg19::chr6:166581583..166581586,+#_0840a092d77f3990a2866b109d5efc93p@chr6:166581583..166581586, +
1.55e-98FFCP PHASE2:Hg19::chr14:106829914..106829921,-#_0840a092d77f3990a2866b109d5efc93p1@HM996258, p1@HM996415, p1@HM996438
1.55e-98FFCP PHASE1:Hg19::chr21:20752389..20752420,-#_0840a092d77f3990a2866b109d5efc93p@chr21:20752389..20752420, -
1.55e-98FFCP PHASE2:Hg19::chr6:39962295..39962305,+#_0840a092d77f3990a2866b109d5efc93p@chr6:39962295..39962305, +
1.55e-98FFCP PHASE2:Hg19::chr4:8046897..8046900,+#_0840a092d77f3990a2866b109d5efc93p@chr4:8046897..8046900, +
1.55e-98FFCP PHASE1:Hg19::chr3:79363599..79363606,+#_0840a092d77f3990a2866b109d5efc93p@chr3:79363599..79363606, +
1.55e-98FFCP PHASE1:Hg19::chr12:122462770..122462775,+#_0840a092d77f3990a2866b109d5efc93p@chr12:122462770..122462775, +
1.55e-98FFCP PHASE1:Hg19::chr15:66464730..66464736,-#_0840a092d77f3990a2866b109d5efc93p@chr15:66464730..66464736, -
1.55e-98FFCP PHASE1:Hg19::chr6:164466441..164466449,+#_0840a092d77f3990a2866b109d5efc93p@chr6:164466441..164466449, +
1.55e-98FFCP PHASE2:Hg19::chr9:138904824..138904829,+#_0840a092d77f3990a2866b109d5efc93p@chr9:138904824..138904829, +
1.55e-98FFCP PHASE1:Hg19::chr4:176358284..176358287,-#_0840a092d77f3990a2866b109d5efc93p@chr4:176358284..176358287, -
1.55e-98FFCP PHASE1:Hg19::chr5:88646759..88646764,+#_0840a092d77f3990a2866b109d5efc93p@chr5:88646759..88646764, +
1.55e-98FFCP PHASE2:Hg19::chr1:17349654..17349690,-#_0840a092d77f3990a2866b109d5efc93p6@SDHB
1.55e-98FFCP PHASE1:Hg19::chr21:20867728..20867731,-#_0840a092d77f3990a2866b109d5efc93p@chr21:20867728..20867731, -
1.55e-98FFCP PHASE2:Hg19::chr2:77746775..77746779,-#_0840a092d77f3990a2866b109d5efc93p14@LRRTM4
1.55e-98FFCP PHASE1:Hg19::chr1:17349613..17349631,-#_0840a092d77f3990a2866b109d5efc93p8@SDHB
1.55e-98FFCP PHASE2:Hg19::chr14:53594794..53594799,+#_0840a092d77f3990a2866b109d5efc93p@chr14:53594794..53594799, +
1.55e-98FFCP PHASE1:Hg19::chr3:168236611..168236612,-#_0840a092d77f3990a2866b109d5efc93p@chr3:168236611..168236612, -
1.55e-98FFCP PHASE2:Hg19::chr10:56410468..56410499,-#_0840a092d77f3990a2866b109d5efc93p@chr10:56410468..56410499, -
1.55e-98FFCP PHASE2:Hg19::chr17:76471146..76471155,+#_0840a092d77f3990a2866b109d5efc93p@chr17:76471146..76471155, +
1.55e-98FFCP PHASE1:Hg19::chr2:77746703..77746711,-#_0840a092d77f3990a2866b109d5efc93p9@LRRTM4
1.55e-98FFCP PHASE2:Hg19::chr3:158747347..158747353,+#_0840a092d77f3990a2866b109d5efc93p@chr3:158747347..158747353, +
1.55e-98FFCP PHASE2:Hg19::chr22:23234780..23234786,+#_0840a092d77f3990a2866b109d5efc93p@chr22:23234780..23234786, +
1.55e-98FFCP PHASE2:Hg19::chr6:166581590..166581596,+#_0840a092d77f3990a2866b109d5efc93p@chr6:166581590..166581596, +
1.55e-98FFCP PHASE2:Hg19::chr3:19436672..19436686,+#_0840a092d77f3990a2866b109d5efc93p@chr3:19436672..19436686, +
1.55e-98FFCP PHASE1:Hg19::chr21:20752617..20752622,-#_0840a092d77f3990a2866b109d5efc93p@chr21:20752617..20752622, -
1.55e-98FFCP PHASE2:Hg19::chr2:77581116..77581120,-#_0840a092d77f3990a2866b109d5efc93p@chr2:77581116..77581120, -
1.55e-98FFCP PHASE1:Hg19::chr12:40991131..40991149,+#_0840a092d77f3990a2866b109d5efc93p@chr12:40991131..40991149, +
1.55e-98FFCP PHASE1:Hg19::chr14:106829914..106829921,-#_0840a092d77f3990a2866b109d5efc93p1@HM996258, p1@HM996415, p1@HM996438
1.55e-98FFCP PHASE2:Hg19::chr6:39962337..39962342,+#_0840a092d77f3990a2866b109d5efc93p@chr6:39962337..39962342, +
1.55e-98FFCP PHASE2:Hg19::chr4:8046990..8046993,-#_0840a092d77f3990a2866b109d5efc93p@chr4:8046990..8046993, -
1.55e-98FFCP PHASE2:Hg19::chr17:76475275..76475285,-#_0840a092d77f3990a2866b109d5efc93p@chr17:76475275..76475285, -
1.55e-98FFCP PHASE2:Hg19::chr3:6686484..6686491,+#_0840a092d77f3990a2866b109d5efc93p@chr3:6686484..6686491, +
1.55e-98FFCP PHASE1:Hg19::chr6:166581583..166581586,+#_0840a092d77f3990a2866b109d5efc93p@chr6:166581583..166581586, +
1.55e-98FFCP PHASE1:Hg19::chr6:39962295..39962305,+#_0840a092d77f3990a2866b109d5efc93p@chr6:39962295..39962305, +
1.55e-98FFCP PHASE1:Hg19::chr4:8046897..8046900,+#_0840a092d77f3990a2866b109d5efc93p@chr4:8046897..8046900, +
1.55e-98FFCP PHASE2:Hg19::chr4:3881462..3881469,-#_0840a092d77f3990a2866b109d5efc93p@chr4:3881462..3881469, -
1.55e-98FFCP PHASE2:Hg19::chr12:4313331..4313334,+#_0840a092d77f3990a2866b109d5efc93p@chr12:4313331..4313334, +
1.55e-98FFCP PHASE2:Hg19::chr5:114291872..114291873,+#_0840a092d77f3990a2866b109d5efc93p@chr5:114291872..114291873, +
1.55e-98FFCP PHASE1:Hg19::chr1:17349654..17349690,-#_0840a092d77f3990a2866b109d5efc93p6@SDHB
1.55e-98FFCP PHASE1:Hg19::chr3:168337915..168337930,-#_0840a092d77f3990a2866b109d5efc93p@chr3:168337915..168337930, -
1.55e-98FFCP PHASE2:Hg19::chr17:76471163..76471166,+#_0840a092d77f3990a2866b109d5efc93p@chr17:76471163..76471166, +
1.55e-98FFCP PHASE2:Hg19::chr11:26122006..26122011,-#_0840a092d77f3990a2866b109d5efc93p@chr11:26122006..26122011, -
1.55e-98FFCP PHASE1:Hg19::chr2:77746775..77746779,-#_0840a092d77f3990a2866b109d5efc93p14@LRRTM4
1.55e-98FFCP PHASE2:Hg19::chr6:164466325..164466331,+#_0840a092d77f3990a2866b109d5efc93p@chr6:164466325..164466331, +
1.55e-98FFCP PHASE2:Hg19::chrX:89012355..89012363,+#_0840a092d77f3990a2866b109d5efc93p@chrX:89012355..89012363, +
1.55e-98FFCP PHASE1:Hg19::chr17:76471146..76471155,+#_0840a092d77f3990a2866b109d5efc93p@chr17:76471146..76471155, +
1.55e-98FFCP PHASE1:Hg19::chr22:23234780..23234786,+#_0840a092d77f3990a2866b109d5efc93p@chr22:23234780..23234786, +
1.55e-98FFCP PHASE2:Hg19::chr12:8808206..8808209,-#_0840a092d77f3990a2866b109d5efc93p@chr12:8808206..8808209, -
1.55e-98FFCP PHASE1:Hg19::chr3:19436672..19436686,+#_0840a092d77f3990a2866b109d5efc93p@chr3:19436672..19436686, +
1.55e-98FFCP PHASE2:Hg19::chr12:117256221..117256231,+#_0840a092d77f3990a2866b109d5efc93p@chr12:117256221..117256231, +
1.55e-98FFCP PHASE1:Hg19::chr9:138904824..138904829,+#_0840a092d77f3990a2866b109d5efc93p@chr9:138904824..138904829, +
1.55e-98FFCP PHASE1:Hg19::chr6:166581590..166581596,+#_0840a092d77f3990a2866b109d5efc93p@chr6:166581590..166581596, +
1.55e-98FFCP PHASE1:Hg19::chr6:39962337..39962342,+#_0840a092d77f3990a2866b109d5efc93p@chr6:39962337..39962342, +
1.55e-98FFCP PHASE1:Hg19::chr4:8046990..8046993,-#_0840a092d77f3990a2866b109d5efc93p@chr4:8046990..8046993, -
1.55e-98FFCP PHASE1:Hg19::chr17:76475275..76475285,-#_0840a092d77f3990a2866b109d5efc93p@chr17:76475275..76475285, -
1.55e-98FFCP PHASE1:Hg19::chr3:6686484..6686491,+#_0840a092d77f3990a2866b109d5efc93p@chr3:6686484..6686491, +
1.55e-98FFCP PHASE1:Hg19::chr2:77581116..77581120,-#_0840a092d77f3990a2866b109d5efc93p@chr2:77581116..77581120, -
1.55e-98FFCP PHASE2:Hg19::chr21:20747453..20747465,-#_0840a092d77f3990a2866b109d5efc93p@chr21:20747453..20747465, -
1.55e-98FFCP PHASE1:Hg19::chr14:53594794..53594799,+#_0840a092d77f3990a2866b109d5efc93p@chr14:53594794..53594799, +
1.55e-98FFCP PHASE2:Hg19::chr12:122458855..122458857,+#_0840a092d77f3990a2866b109d5efc93p16@BCL7A
1.55e-98FFCP PHASE2:Hg19::chrX:42727038..42727047,-#_0840a092d77f3990a2866b109d5efc93p@chrX:42727038..42727047, -
1.55e-98FFCP PHASE1:Hg19::chr4:3881462..3881469,-#_0840a092d77f3990a2866b109d5efc93p@chr4:3881462..3881469, -
1.55e-98FFCP PHASE1:Hg19::chr12:40953942..40953946,+#_0840a092d77f3990a2866b109d5efc93p@chr12:40953942..40953946, +
1.55e-98FFCP PHASE2:Hg19::chr4:176353908..176353917,-#_0840a092d77f3990a2866b109d5efc93p@chr4:176353908..176353917, -
1.55e-98FFCP PHASE2:Hg19::chr11:26124040..26124064,-#_0840a092d77f3990a2866b109d5efc93p@chr11:26124040..26124064, -
1.55e-98FFCP PHASE1:Hg19::chr3:158747347..158747353,+#_0840a092d77f3990a2866b109d5efc93p@chr3:158747347..158747353, +
1.55e-98FFCP PHASE2:Hg19::chr6:164466345..164466352,+#_0840a092d77f3990a2866b109d5efc93p@chr6:164466345..164466352, +
1.55e-98FFCP PHASE2:Hg19::chr1:101853882..101853891,-#_0840a092d77f3990a2866b109d5efc93p@chr1:101853882..101853891, -
1.55e-98FFCP PHASE1:Hg19::chr10:56410468..56410499,-#_0840a092d77f3990a2866b109d5efc93p@chr10:56410468..56410499, -
1.55e-98FFCP PHASE1:Hg19::chr17:76471163..76471166,+#_0840a092d77f3990a2866b109d5efc93p@chr17:76471163..76471166, +
1.55e-98FFCP PHASE1:Hg19::chr6:164466325..164466331,+#_0840a092d77f3990a2866b109d5efc93p@chr6:164466325..164466331, +
1.55e-98FFCP PHASE2:Hg19::chr12:122462770..122462775,+#_0840a092d77f3990a2866b109d5efc93p@chr12:122462770..122462775, +
1.55e-98FFCP PHASE1:Hg19::chrX:89012355..89012363,+#_0840a092d77f3990a2866b109d5efc93p@chrX:89012355..89012363, +
1.55e-98FFCP PHASE2:Hg19::chr12:40991131..40991149,+#_0840a092d77f3990a2866b109d5efc93p@chr12:40991131..40991149, +
1.55e-98FFCP PHASE2:Hg19::chr8:128270027..128270033,-#_0840a092d77f3990a2866b109d5efc93p@chr8:128270027..128270033, -
1.55e-98FFCP PHASE2:Hg19::chr6:166581265..166581274,-#_0840a092d77f3990a2866b109d5efc93p5@T
1.55e-98FFCP PHASE2:Hg19::chr7:86415255..86415288,+#_0840a092d77f3990a2866b109d5efc93p@chr7:86415255..86415288, +
1.55e-98FFCP PHASE1:Hg19::chr12:8808206..8808209,-#_0840a092d77f3990a2866b109d5efc93p@chr12:8808206..8808209, -
1.55e-98FFCP PHASE1:Hg19::chr11:26122006..26122011,-#_0840a092d77f3990a2866b109d5efc93p@chr11:26122006..26122011, -
1.55e-98FFCP PHASE2:Hg19::chr3:168236611..168236612,-#_0840a092d77f3990a2866b109d5efc93p@chr3:168236611..168236612, -
1.55e-98FFCP PHASE2:Hg19::chr3:178947187..178947192,+#_0840a092d77f3990a2866b109d5efc93p@chr3:178947187..178947192, +
1.55e-98FFCP PHASE1:Hg19::chr5:114291872..114291873,+#_0840a092d77f3990a2866b109d5efc93p@chr5:114291872..114291873, +
1.55e-98FFCP PHASE2:Hg19::chr21:20752389..20752420,-#_0840a092d77f3990a2866b109d5efc93p@chr21:20752389..20752420, -
1.55e-98FFCP PHASE1:Hg19::chr21:20747453..20747465,-#_0840a092d77f3990a2866b109d5efc93p@chr21:20747453..20747465, -
1.55e-98FFCP PHASE2:Hg19::chr3:79363599..79363606,+#_0840a092d77f3990a2866b109d5efc93p@chr3:79363599..79363606, +
1.55e-98FFCP PHASE2:Hg19::chr4:176358284..176358287,-#_0840a092d77f3990a2866b109d5efc93p@chr4:176358284..176358287, -
1.55e-98FFCP PHASE2:Hg19::chr15:66464730..66464736,-#_0840a092d77f3990a2866b109d5efc93p@chr15:66464730..66464736, -
1.55e-98FFCP PHASE1:Hg19::chrX:42727038..42727047,-#_0840a092d77f3990a2866b109d5efc93p@chrX:42727038..42727047, -
1.55e-98FFCP PHASE2:Hg19::chr6:164466441..164466449,+#_0840a092d77f3990a2866b109d5efc93p@chr6:164466441..164466449, +
1.55e-98FFCP PHASE2:Hg19::chr21:20867728..20867731,-#_0840a092d77f3990a2866b109d5efc93p@chr21:20867728..20867731, -
1.55e-98FFCP PHASE2:Hg19::chr12:40953942..40953946,+#_0840a092d77f3990a2866b109d5efc93p@chr12:40953942..40953946, +
1.55e-98FFCP PHASE2:Hg19::chr5:88646759..88646764,+#_0840a092d77f3990a2866b109d5efc93p@chr5:88646759..88646764, +
1.55e-98FFCP PHASE1:Hg19::chr6:164466345..164466352,+#_0840a092d77f3990a2866b109d5efc93p@chr6:164466345..164466352, +
1.55e-98FFCP PHASE1:Hg19::chr1:101853882..101853891,-#_0840a092d77f3990a2866b109d5efc93p@chr1:101853882..101853891, -
1.55e-98FFCP PHASE1:Hg19::chr4:176353908..176353917,-#_0840a092d77f3990a2866b109d5efc93p@chr4:176353908..176353917, -
1.55e-98FFCP PHASE2:Hg19::chr1:17349613..17349631,-#_0840a092d77f3990a2866b109d5efc93p8@SDHB
1.55e-98FFCP PHASE1:Hg19::chr12:117256221..117256231,+#_0840a092d77f3990a2866b109d5efc93p@chr12:117256221..117256231, +

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