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{{CL
{{CL
|id=CL:0000791
|alt_id=
|name=mature alpha-beta T cell
|namespace=efo
|def="A alpha-beta T cell that has a mature phenotype." [GOC:add, GOC:tfm, ISBN:0781735149]
|xref=
|is_a=CL:0000789;;CL:0002419
|synonym="mature alpha-beta T lymphocyte" EXACT [];;"mature alpha-beta T-cell" EXACT [];;"mature alpha-beta T-lymphocyte" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A alpha-beta T cell that has a mature phenotype." [GOC:add, GOC:tfm, ISBN:0781735149]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0000790
|develops_from=CL:0000790
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000791
|is_a=CL:0000789 ;;CL:0002419
|is_obsolete=
|located_in=
|located_in=
|name=mature alpha-beta T cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="mature alpha-beta T lymphocyte" EXACT [];;"mature alpha-beta T-cell" EXACT [];;"mature alpha-beta T-lymphocyte" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:37, 12 September 2014

Name:mature alpha-beta T cell
Namespace:FANTOM
Definition:"A alpha-beta T cell that has a mature phenotype." [GOC:add, GOC:tfm, ISBN:0781735149]
Synonyms: "mature alpha-beta T lymphocyte" EXACT []
"mature alpha-beta T-cell" EXACT []
"mature alpha-beta T-lymphocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000789(alpha-beta T cell),CL:0002419(mature T cell)
develops_from:CL:0000790(immature alpha-beta T cell)



Children


is a:CL:0000624 (CD4-positive, alpha-beta T cell),CL:0000625 (CD8-positive, alpha-beta T cell),CL:0000814 (mature NK T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000791 (mature alpha-beta T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.82e-125FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_89a89f6ab9d1294075be88468103e29cp@chr5:35859622..35859626, +
4.82e-125FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_89a89f6ab9d1294075be88468103e29cp@chr5:35859622..35859626, +
2.55e-96FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_74c95d0358be449146f55c9d305b5a35p@chr15:89179440..89179457, -
2.55e-96FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_74c95d0358be449146f55c9d305b5a35p@chr15:89179440..89179457, -
1.42e-94FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_921883a6ef95354ff39b1a14f008e04bp@chr5:35854487..35854499, -
1.42e-94FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_921883a6ef95354ff39b1a14f008e04bp@chr5:35854487..35854499, -
1.09e-92FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_53d8e3e3b167647b3f79e9a5a5f67aa3p@chr5:35854779..35854826, +
1.09e-92FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_53d8e3e3b167647b3f79e9a5a5f67aa3p@chr5:35854779..35854826, +
4.33e-92FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_a5806fb4ce49c87b3b503819158f90acp@chr4:103551892..103551903, -
4.33e-92FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_a5806fb4ce49c87b3b503819158f90acp@chr4:103551892..103551903, -
1.97e-90FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_515032bbe2d52b42c96e36e39f0963e5p@chr5:35856882..35856909, -
1.97e-90FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_515032bbe2d52b42c96e36e39f0963e5p@chr5:35856882..35856909, -
2.93e-90FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_7da0b070c6b3f17e115a1ac54147799fp1@GTSCR1
2.93e-90FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_7da0b070c6b3f17e115a1ac54147799fp1@GTSCR1
5.78e-88FFCP PHASE1:Hg19::chr7:97880779..97880793,+#_10aae37447bb5d754ddcf7c662c8743dp@chr7:97880779..97880793, +
5.78e-88FFCP PHASE2:Hg19::chr7:97880779..97880793,+#_10aae37447bb5d754ddcf7c662c8743dp@chr7:97880779..97880793, +
8.73e-88FFCP PHASE1:Hg19::chr1:25255894..25255906,+#_c74053a8498c347831c69f10869b1157p@chr1:25255894..25255906, +
8.73e-88FFCP PHASE2:Hg19::chr1:25255894..25255906,+#_c74053a8498c347831c69f10869b1157p@chr1:25255894..25255906, +
4.59e-87FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_78e03c984c6a274ff746b0b0e2f1f6a2p10@HNRPLL
4.59e-87FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_78e03c984c6a274ff746b0b0e2f1f6a2p10@HNRPLL
1.31e-86FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_208f7009d08fc1fd7989b931be57847dp1@ENSMUST00000103733
1.31e-86FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_208f7009d08fc1fd7989b931be57847dp3@Tnfrsf25
1.31e-86FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_208f7009d08fc1fd7989b931be57847dp@chr4:32339511..32339518, +
1.31e-86FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_208f7009d08fc1fd7989b931be57847dp1@uc007tsm.1
1.31e-86FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_208f7009d08fc1fd7989b931be57847dp@chr6:48637679..48637692, +
1.31e-86FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_208f7009d08fc1fd7989b931be57847dp@chr19:10869146..10869168, -
1.31e-86FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_208f7009d08fc1fd7989b931be57847dp1@uc007tsm.1
1.31e-86FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_208f7009d08fc1fd7989b931be57847dp@chr11:99015330..99015341, -
1.31e-86FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_208f7009d08fc1fd7989b931be57847dp@chr19:10869146..10869168, -
1.31e-86FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_208f7009d08fc1fd7989b931be57847dp@chr4:32339511..32339518, +
1.31e-86FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_208f7009d08fc1fd7989b931be57847dp@chr11:99015330..99015341, -
1.31e-86FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_208f7009d08fc1fd7989b931be57847dp1@ENSMUST00000103733
1.31e-86FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_208f7009d08fc1fd7989b931be57847dp@chr6:48637679..48637692, +
1.31e-86FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_208f7009d08fc1fd7989b931be57847dp3@Tnfrsf25
2.98e-86FFCP PHASE2:Hg19::chr10:14611822..14611844,-#_85cceca949c645b099ad4d62c900e155p@chr10:14611822..14611844, -
2.98e-86FFCP PHASE1:Hg19::chr10:14611822..14611844,-#_85cceca949c645b099ad4d62c900e155p@chr10:14611822..14611844, -
3.57e-86FFCP PHASE2:Hg19::chr4:90205082..90205093,+#_819b8b1f7886db8ef4be013df2584c98p@chr4:90205082..90205093, +
3.57e-86FFCP PHASE1:Hg19::chr4:90205082..90205093,+#_819b8b1f7886db8ef4be013df2584c98p@chr4:90205082..90205093, +
9.89e-85FFCP PHASE1:Hg19::chr16:57162957..57162973,+#_2d9e3cef0240272dc16876f779ec2807p@chr16:57162957..57162973, +
9.89e-85FFCP PHASE2:Hg19::chr16:57162957..57162973,+#_2d9e3cef0240272dc16876f779ec2807p@chr16:57162957..57162973, +
1.01e-83FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_057e095350a5781adc09d7c5228bae3ap@chr2:87053288..87053295, -
1.01e-83FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_057e095350a5781adc09d7c5228bae3ap@chr2:87053288..87053295, -
1.1e-83FFCP PHASE2:Hg19::chr6:128299606..128299618,+#_8fcbb017d3c5d97d1aa8708cebcfa81ep@chr6:128299606..128299618, +
1.1e-83FFCP PHASE2:Hg19::chr11:122709344..122709378,+#_8fcbb017d3c5d97d1aa8708cebcfa81ep@chr11:122709344..122709378, +
1.1e-83FFCP PHASE1:Hg19::chr11:122709344..122709378,+#_8fcbb017d3c5d97d1aa8708cebcfa81ep@chr11:122709344..122709378, +
1.1e-83FFCP PHASE1:Hg19::chr6:128299606..128299618,+#_8fcbb017d3c5d97d1aa8708cebcfa81ep@chr6:128299606..128299618, +
1.69e-83FFCP PHASE1:Hg19::chr5:35780579..35780585,+#_97c55e89303d69dbfb379828da3ccc98p@chr5:35780579..35780585, +
1.69e-83FFCP PHASE2:Hg19::chr5:35780579..35780585,+#_97c55e89303d69dbfb379828da3ccc98p@chr5:35780579..35780585, +
1.02e-82FFCP PHASE1:Hg19::chr5:35859218..35859252,-#_6c0d37c029acac24f88a89a5f9718556p@chr5:35859218..35859252, -
1.02e-82FFCP PHASE2:Hg19::chr5:35859218..35859252,-#_6c0d37c029acac24f88a89a5f9718556p@chr5:35859218..35859252, -
1.33e-82FFCP PHASE2:Hg19::chr12:49375076..49375089,-#_90c95de123b2546362d117690cf01540p@chr12:49375076..49375089, -
1.33e-82FFCP PHASE1:Hg19::chr12:49375076..49375089,-#_90c95de123b2546362d117690cf01540p@chr12:49375076..49375089, -
3.02e-82FFCP PHASE2:Hg19::chr10:9060907..9060927,-#_3e18616acadc27b0381bdd05afe4f686p@chr10:9060907..9060927, -
3.02e-82FFCP PHASE1:Hg19::chr10:9060907..9060927,-#_3e18616acadc27b0381bdd05afe4f686p@chr10:9060907..9060927, -
4.05e-82FFCP PHASE2:Hg19::chr12:10561626..10561641,-#_c9a26c8f5c96469420010cc6ee9f2bc5p@chr12:10561626..10561641, -
4.05e-82FFCP PHASE1:Hg19::chr12:10561626..10561641,-#_c9a26c8f5c96469420010cc6ee9f2bc5p@chr12:10561626..10561641, -
4.31e-82FFCP PHASE2:Hg19::chr7:150178764..150178778,-#_53dca8d16593b451df2f4f5f4ed990ccp@chr7:150178764..150178778, -
4.31e-82FFCP PHASE1:Hg19::chr7:150178764..150178778,-#_53dca8d16593b451df2f4f5f4ed990ccp@chr7:150178764..150178778, -
5.81e-82FFCP PHASE2:Hg19::chr2:182038499..182038509,+#_1c0a0581c9c5600c3f5116b9f4505fffp@chr2:182038499..182038509, +
5.81e-82FFCP PHASE1:Hg19::chr2:182038499..182038509,+#_1c0a0581c9c5600c3f5116b9f4505fffp@chr2:182038499..182038509, +
1.02e-81FFCP PHASE2:Hg19::chr4:4271366..4271377,-#_14716de4603a96fd316fcb0acaf609adp@chr4:4271366..4271377, -
1.02e-81FFCP PHASE1:Hg19::chr4:4271366..4271377,-#_14716de4603a96fd316fcb0acaf609adp@chr4:4271366..4271377, -
8.22e-81FFCP PHASE2:Hg19::chr11:108094238..108094253,+#_3e752f50cfd196dd1982bdab8de3a708p10@ATM
8.22e-81FFCP PHASE1:Hg19::chr11:108094238..108094253,+#_3e752f50cfd196dd1982bdab8de3a708p10@ATM
2.22e-80FFCP PHASE2:Hg19::chr12:12867774..12867787,-#_94c2b6170871450e58305fdeb24cbf84p@chr12:12867774..12867787, -
2.22e-80FFCP PHASE1:Hg19::chr12:12867774..12867787,-#_94c2b6170871450e58305fdeb24cbf84p@chr12:12867774..12867787, -
8.6e-79FFCP PHASE1:Hg19::chr5:67571114..67571129,-#_5914afa2109d90e4e79ff6a4b5b0eab1p@chr5:67571114..67571129, -
8.6e-79FFCP PHASE2:Hg19::chr5:67571114..67571129,-#_5914afa2109d90e4e79ff6a4b5b0eab1p@chr5:67571114..67571129, -
2.3e-78FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_6b784a033c51d39b9f580c09226d1661p1@ENSMUST00000103714
2.3e-78FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_6b784a033c51d39b9f580c09226d1661p1@ENSMUST00000103714
2.3e-78FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_6b784a033c51d39b9f580c09226d1661p@chr5:123440486..123440504, -
2.3e-78FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_6b784a033c51d39b9f580c09226d1661p@chr12:74704873..74704900, +
2.3e-78FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_6b784a033c51d39b9f580c09226d1661p@chr14:56207154..56207165, -
2.3e-78FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_6b784a033c51d39b9f580c09226d1661p@chr14:56207154..56207165, -
2.3e-78FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_6b784a033c51d39b9f580c09226d1661p@chr5:123440486..123440504, -
2.3e-78FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_6b784a033c51d39b9f580c09226d1661p@chr7:31935025..31935037, +
2.3e-78FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_6b784a033c51d39b9f580c09226d1661p@chr8:84082784..84082795, +
2.3e-78FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_6b784a033c51d39b9f580c09226d1661p@chr7:31935025..31935037, +
2.3e-78FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_6b784a033c51d39b9f580c09226d1661p@chr12:74704873..74704900, +
2.3e-78FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_6b784a033c51d39b9f580c09226d1661p@chr8:84082784..84082795, +
2.56e-78FFCP PHASE1:Hg19::chr6:143228788..143228799,-#_001c7500a68bbdc1ad0c1aca0c2ddad2p@chr6:143228788..143228799, -
2.56e-78FFCP PHASE2:Hg19::chr6:143228788..143228799,-#_001c7500a68bbdc1ad0c1aca0c2ddad2p@chr6:143228788..143228799, -
2.82e-78FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_5d51215baea798752e5ed110a1d64e97p@chr5:123440767..123440778, +
2.82e-78FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_5d51215baea798752e5ed110a1d64e97p@chr4:32422919..32422935, +
2.82e-78FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_5d51215baea798752e5ed110a1d64e97p@chr14:54838649..54838660, +
2.82e-78FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_5d51215baea798752e5ed110a1d64e97p@chr14:54838649..54838660, +
2.82e-78FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_5d51215baea798752e5ed110a1d64e97p@chr4:32422919..32422935, +
2.82e-78FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_5d51215baea798752e5ed110a1d64e97p@chr5:123440767..123440778, +
3.46e-78FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_74985397152b1b54da953d3f78c488cap@chr15:27786221..27786240, -
3.46e-78FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_74985397152b1b54da953d3f78c488cap@chr15:27786221..27786240, -
4.25e-78FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_fdaefda2c32ef8250bca08dafc2a3e9dp@chr6:99215016..99215036, +
4.25e-78FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_fdaefda2c32ef8250bca08dafc2a3e9dp@chr3:103672068..103672090, -
4.25e-78FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_fdaefda2c32ef8250bca08dafc2a3e9dp@chr6:99215016..99215036, +
4.25e-78FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_fdaefda2c32ef8250bca08dafc2a3e9dp@chr3:103672068..103672090, -
5.22e-78FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_abaff3056a79a2c7709a854219248c35p@chr6:48634453..48634468, -
5.22e-78FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_abaff3056a79a2c7709a854219248c35p@chr6:48634453..48634468, -
6.45e-78FFCP PHASE1:Hg19::chr7:36816941..36816949,+#_155f7f7b72717717d20da4a51f9853cfp@chr7:36816941..36816949, +
6.45e-78FFCP PHASE2:Hg19::chr7:36816941..36816949,+#_155f7f7b72717717d20da4a51f9853cfp@chr7:36816941..36816949, +
7.86e-78FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_1dd0eaf9d89384225f4843cb81bc5140p5@uc007vxz.1
7.86e-78FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_1dd0eaf9d89384225f4843cb81bc5140p5@uc007vxz.1

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