CL:0000327: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000327 | |||
|is_a=CL:0000151 ;;CL:0000499 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=extracellular matrix secreting cell | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 16:33, 12 September 2014
| Name: | extracellular matrix secreting cell |
|---|---|
| Namespace: | FANTOM |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000151(secretory cell),CL:0000499(stromal cell) |
|---|
Children
| is a: | CL:0000153 (GAG secreting cell),CL:0000632 (hepatic stellate cell),CL:0000667 (collagen secreting cell),CL:0000708 (leptomeningeal cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10700-109G7 (chondrosarcoma cell line:SW 1353)
- 10720-109I9
- 10767-110F2
- 10778-110G4 (hepatic mesenchymal tumor cell line:LI90)
- 11261-116G1 (Chondrocyte - de diff, donor1)
- 11262-116G2
- 11291-117A4 (Synoviocyte, donor1)
- 11338-117F6 (Chondrocyte - de diff, donor2)
... further results Mouse (Mus musculus)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10700-109G7 (chondrosarcoma cell line:SW 1353)
- 10720-109I9
- 10767-110F2
- 10778-110G4 (hepatic mesenchymal tumor cell line:LI90)
- 11261-116G1 (Chondrocyte - de diff, donor1)
- 11262-116G2
- 11291-117A4 (Synoviocyte, donor1)
- 11338-117F6 (Chondrocyte - de diff, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000327 (extracellular matrix secreting cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.2e-59 | FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_6c0e9609c32e8a264c48600092c7e120 | p6@ACAN |
| 3.2e-59 | FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_6c0e9609c32e8a264c48600092c7e120 | p6@ACAN |
| 7.79e-53 | FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_fd2de4aec53ac9098cfdd136a645d174 | p8@ACAN |
| 7.79e-53 | FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_fd2de4aec53ac9098cfdd136a645d174 | p8@ACAN |
| 1.33e-52 | FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_6ed98a0ee3a30bcb87d13472591ce44e | p9@ERG |
| 1.33e-52 | FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_6ed98a0ee3a30bcb87d13472591ce44e | p9@ERG |
| 1.33e-52 | FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_6ed98a0ee3a30bcb87d13472591ce44e | p@chr1:186273262..186273282, + |
| 1.33e-52 | FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_6ed98a0ee3a30bcb87d13472591ce44e | p@chr1:186273262..186273282, + |
| 2.68e-46 | FFCP PHASE1:Hg19::chr15:89417758..89417770,+#_f99ad351e654cfbe91bba3499afa5d69 | p@chr15:89417758..89417770, + |
| 2.68e-46 | FFCP PHASE2:Hg19::chr15:89417758..89417770,+#_f99ad351e654cfbe91bba3499afa5d69 | p@chr15:89417758..89417770, + |
| 1.18e-42 | FFCP PHASE2:Hg19::chr7:150824026..150824027,-#_f03aa71d3aa52539f101efd8e78871ee | p@chr7:150824026..150824027, - |
| 1.18e-42 | FFCP PHASE1:Hg19::chr7:150824026..150824027,-#_f03aa71d3aa52539f101efd8e78871ee | p@chr7:150824026..150824027, - |
| 1.7e-39 | FFCP PHASE2:Mm9::chr4:88940410..88940415,-#_82f603712d092b14f44c0260bfc5bf42 | p6@Cdkn2a |
| 1.7e-39 | FFCP PHASE1:Mm9::chr4:88940410..88940415,-#_82f603712d092b14f44c0260bfc5bf42 | p6@Cdkn2a |
| 3.34e-38 | FFCP PHASE1:Hg19::chr15:89381951..89381962,+#_1a002debae693999a8d4cae95ab108a7 | p@chr15:89381951..89381962, + |
| 3.34e-38 | FFCP PHASE2:Hg19::chr15:89381951..89381962,+#_1a002debae693999a8d4cae95ab108a7 | p@chr15:89381951..89381962, + |
| 7.64e-38 | FFCP PHASE1:Hg19::chr12:57629234..57629249,-#_39d496f4c437e755234fe2e27a2754b2 | p@chr12:57629234..57629249, - |
| 7.64e-38 | FFCP PHASE2:Hg19::chr12:57629234..57629249,-#_39d496f4c437e755234fe2e27a2754b2 | p@chr12:57629234..57629249, - |
| 1.12e-37 | FFCP PHASE1:Hg19::chr1:203149716..203149729,-#_c500e24e8cd1cbb6fba6d4496ba55685 | p19@CHI3L1 |
| 1.12e-37 | FFCP PHASE2:Hg19::chr1:203149716..203149729,-#_c500e24e8cd1cbb6fba6d4496ba55685 | p19@CHI3L1 |
| 9.66e-37 | FFCP PHASE1:Hg19::chr1:186277359..186277362,+#_989058418bfb2bbc4d29fd9b34adfbe7 | p@chr1:186277359..186277362, + |
| 9.66e-37 | FFCP PHASE2:Hg19::chr1:186277359..186277362,+#_989058418bfb2bbc4d29fd9b34adfbe7 | p@chr1:186277359..186277362, + |
| 1.12e-36 | FFCP PHASE1:Hg19::chr1:186276427..186276448,+#_e1a2fe2894d300a5a359f3cd50b41f91 | p@chr1:186276427..186276448, + |
| 1.12e-36 | FFCP PHASE2:Hg19::chr1:186276427..186276448,+#_e1a2fe2894d300a5a359f3cd50b41f91 | p@chr1:186276427..186276448, + |
| 1.14e-35 | FFCP PHASE1:Hg19::chr1:186277186..186277192,+#_a237e97d53a413e4ab5d3eeeee2ec769 | p@chr1:186277186..186277192, + |
| 1.14e-35 | FFCP PHASE2:Hg19::chr1:186277186..186277192,+#_a237e97d53a413e4ab5d3eeeee2ec769 | p@chr1:186277186..186277192, + |
| 3.78e-35 | FFCP PHASE2:Hg19::chr1:203154508..203154518,-#_37749f531a5edc71c36c3a40e86c9a56 | p20@CHI3L1 |
| 3.78e-35 | FFCP PHASE1:Hg19::chr1:203154508..203154518,-#_37749f531a5edc71c36c3a40e86c9a56 | p20@CHI3L1 |
| 3.63e-34 | FFCP PHASE1:Hg19::chr7:45953320..45953329,+#_01b7f908f13da79ae1b45957ed1d809f | p@chr7:45953320..45953329, + |
| 3.63e-34 | FFCP PHASE2:Hg19::chr7:45953320..45953329,+#_01b7f908f13da79ae1b45957ed1d809f | p@chr7:45953320..45953329, + |
| 4.57e-34 | FFCP PHASE2:Hg19::chr12:57629315..57629334,-#_4b56712e0c6f8feabfa7be1162ba3714 | p@chr12:57629315..57629334, - |
| 4.57e-34 | FFCP PHASE1:Hg19::chr12:57629315..57629334,-#_4b56712e0c6f8feabfa7be1162ba3714 | p@chr12:57629315..57629334, - |
| 6.91e-34 | FFCP PHASE1:Hg19::chr1:203149741..203149762,-#_80446e51280b605fa4131ffb6f906f89 | p14@CHI3L1 |
| 6.91e-34 | FFCP PHASE2:Hg19::chr1:203149741..203149762,-#_80446e51280b605fa4131ffb6f906f89 | p14@CHI3L1 |
| 6.39e-32 | FFCP PHASE1:Hg19::chr1:203152908..203152924,-#_48f7403be8bc49abfabae3206ffa07ff | p@chr1:203152908..203152924, - |
| 6.39e-32 | FFCP PHASE2:Hg19::chr1:203152908..203152924,-#_48f7403be8bc49abfabae3206ffa07ff | p@chr1:203152908..203152924, - |
| 9.68e-31 | FFCP PHASE1:Hg19::chr15:89401833..89401842,+#_db8147022a8bfa26b3eaf5c8fcbbee21 | p10@ACAN |
| 9.68e-31 | FFCP PHASE2:Hg19::chr15:89401833..89401842,+#_db8147022a8bfa26b3eaf5c8fcbbee21 | p10@ACAN |
| 1.22e-30 | FFCP PHASE1:Hg19::chr7:45956964..45956971,+#_d47e6e8a36e23797be386bd231573111 | p@chr7:45956964..45956971, + |
| 1.22e-30 | FFCP PHASE2:Hg19::chr7:45956964..45956971,+#_d47e6e8a36e23797be386bd231573111 | p@chr7:45956964..45956971, + |
| 1.65e-30 | FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_5a97ee9801018a40808b4894e4129335 | p@chr8:57359975..57359992, - |
| 1.65e-30 | FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_5a97ee9801018a40808b4894e4129335 | p@chr8:57359975..57359992, - |
| 1.78e-30 | FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_79866c9bfd5a115f9fa08a6b746ffedd | p@chr8:57353982..57353991, - |
| 1.78e-30 | FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_79866c9bfd5a115f9fa08a6b746ffedd | p@chr8:57353982..57353991, - |
| 2.01e-30 | FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_5451b155804e4bc1864ee955025e3ba6 | p@chr18:22150956..22150983, + |
| 2.01e-30 | FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_5451b155804e4bc1864ee955025e3ba6 | p@chr18:22150956..22150983, + |
| 2.22e-30 | FFCP PHASE1:Hg19::chr16:66906996..66906997,-#_2199fb5ac04a6cd306521c8c7442b216 | p@chr16:66906996..66906997, - |
| 2.22e-30 | FFCP PHASE2:Hg19::chr16:66906996..66906997,-#_2199fb5ac04a6cd306521c8c7442b216 | p@chr16:66906996..66906997, - |
| 2.45e-30 | FFCP PHASE1:Hg19::chr16:69969598..69969610,+#_4072e0e4d567fc08902425a56606672a | p@chr16:69969598..69969610, + |
| 2.45e-30 | FFCP PHASE2:Hg19::chr16:69969598..69969610,+#_4072e0e4d567fc08902425a56606672a | p@chr16:69969598..69969610, + |
| 2.45e-30 | FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_4072e0e4d567fc08902425a56606672a | p@chr8:57354278..57354286, + |
| 2.45e-30 | FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_4072e0e4d567fc08902425a56606672a | p@chr8:57354278..57354286, + |
| 2.65e-30 | FFCP PHASE1:Hg19::chr1:186276386..186276397,+#_bb3a1cfcfc130d21c7651c8bb222474a | p@chr1:186276386..186276397, + |
| 2.65e-30 | FFCP PHASE2:Hg19::chr1:186276386..186276397,+#_bb3a1cfcfc130d21c7651c8bb222474a | p@chr1:186276386..186276397, + |
| 2.69e-30 | FFCP PHASE1:Hg19::chr1:203148919..203148937,-#_6612eeddcd4380f623f1e0c97ecc356b | p16@CHI3L1 |
| 2.69e-30 | FFCP PHASE2:Hg19::chr1:203148919..203148937,-#_6612eeddcd4380f623f1e0c97ecc356b | p16@CHI3L1 |
| 5.61e-30 | FFCP PHASE2:Mm9::chr4:50498164..50498166,+#_72d4d47a60a1de5781c17cfa0d0b92aa | p@chr4:50498164..50498166, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr2:156282978..156282979,+#_72d4d47a60a1de5781c17cfa0d0b92aa | p@chr2:156282978..156282979, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr10:94173889..94173890,-#_72d4d47a60a1de5781c17cfa0d0b92aa | p@chr10:94173889..94173890, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr17:15914532..15914535,+#_72d4d47a60a1de5781c17cfa0d0b92aa | p@chr17:15914532..15914535, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr17:15914532..15914535,+#_72d4d47a60a1de5781c17cfa0d0b92aa | p@chr17:15914532..15914535, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr4:50498164..50498166,+#_72d4d47a60a1de5781c17cfa0d0b92aa | p@chr4:50498164..50498166, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chrX:45409736..45409738,+#_72d4d47a60a1de5781c17cfa0d0b92aa | p@chrX:45409736..45409738, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr2:156282978..156282979,+#_72d4d47a60a1de5781c17cfa0d0b92aa | p@chr2:156282978..156282979, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr4:61715146..61715151,-#_72d4d47a60a1de5781c17cfa0d0b92aa | p1@Mup20 |
| 5.61e-30 | FFCP PHASE1:Mm9::chr10:94173889..94173890,-#_72d4d47a60a1de5781c17cfa0d0b92aa | p@chr10:94173889..94173890, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr4:61715146..61715151,-#_72d4d47a60a1de5781c17cfa0d0b92aa | p1@Mup20 |
| 5.61e-30 | FFCP PHASE1:Mm9::chrX:45409736..45409738,+#_72d4d47a60a1de5781c17cfa0d0b92aa | p@chrX:45409736..45409738, + |
| 9.03e-30 | FFCP PHASE1:Hg19::chr7:45954480..45954494,+#_4e71ac94d03fc22e1b5682fc6be7f3ab | p@chr7:45954480..45954494, + |
| 9.03e-30 | FFCP PHASE2:Hg19::chr7:45954480..45954494,+#_4e71ac94d03fc22e1b5682fc6be7f3ab | p@chr7:45954480..45954494, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr4:138749194..138749201,+#_373f0a28c13d06fb6a35fe0254ddc0b1 | p@chr4:138749194..138749201, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr4:138749194..138749201,+#_373f0a28c13d06fb6a35fe0254ddc0b1 | p@chr4:138749194..138749201, + |
| 1.54e-29 | FFCP PHASE1:Mm9::chr7:4729743..4729746,-#_ae7a96c0924119ec9886d0dd2edc8e87 | p1@Il11 |
| 1.54e-29 | FFCP PHASE2:Mm9::chr7:4729743..4729746,-#_ae7a96c0924119ec9886d0dd2edc8e87 | p1@Il11 |
| 3.05e-29 | FFCP PHASE1:Hg19::chr1:203148495..203148505,-#_5ed0bd0dadfa34ad1e3aaf82abbc8e6b | p13@CHI3L1 |
| 3.05e-29 | FFCP PHASE2:Hg19::chr1:203148495..203148505,-#_5ed0bd0dadfa34ad1e3aaf82abbc8e6b | p13@CHI3L1 |
| 3.47e-29 | FFCP PHASE1:Hg19::chr21:40033695..40033712,-#_fd296f4aa9f0097e52031677e59e7081 | p6@ERG |
| 3.47e-29 | FFCP PHASE2:Hg19::chr21:40033695..40033712,-#_fd296f4aa9f0097e52031677e59e7081 | p6@ERG |
| 6.84e-28 | FFCP PHASE1:Hg19::chr1:203150369..203150408,-#_94a6a7e9a29d4cd37550aa0930302862 | p@chr1:203150369..203150408, - |
| 6.84e-28 | FFCP PHASE2:Hg19::chr1:203150369..203150408,-#_94a6a7e9a29d4cd37550aa0930302862 | p@chr1:203150369..203150408, - |
| 6.88e-28 | FFCP PHASE1:Hg19::chr7:45952836..45952875,+#_d6fcd333a2706cf5c31d25bd406d88e2 | p@chr7:45952836..45952875, + |
| 6.88e-28 | FFCP PHASE2:Hg19::chr7:45952836..45952875,+#_d6fcd333a2706cf5c31d25bd406d88e2 | p@chr7:45952836..45952875, + |
| 7.41e-28 | FFCP PHASE1:Hg19::chr7:45953152..45953169,+#_e75cbb7451d2aabe599f63fcc4b5df5a | p@chr7:45953152..45953169, + |
| 7.41e-28 | FFCP PHASE2:Hg19::chr7:45953152..45953169,+#_e75cbb7451d2aabe599f63fcc4b5df5a | p@chr7:45953152..45953169, + |
| 7.41e-28 | FFCP PHASE1:Hg19::chr1:186276857..186276868,+#_e75cbb7451d2aabe599f63fcc4b5df5a | p@chr1:186276857..186276868, + |
| 7.41e-28 | FFCP PHASE2:Hg19::chr1:186276857..186276868,+#_e75cbb7451d2aabe599f63fcc4b5df5a | p@chr1:186276857..186276868, + |
| 7.72e-28 | FFCP PHASE2:Hg19::chr1:203151934..203151947,-#_8fd4d85001f133fc696782b247a3ecf3 | p7@CHI3L1 |
| 7.72e-28 | FFCP PHASE1:Hg19::chr1:203148428..203148437,-#_8fd4d85001f133fc696782b247a3ecf3 | p11@CHI3L1 |
| 7.72e-28 | FFCP PHASE2:Hg19::chr1:203148428..203148437,-#_8fd4d85001f133fc696782b247a3ecf3 | p11@CHI3L1 |
| 7.72e-28 | FFCP PHASE1:Hg19::chr1:203151934..203151947,-#_8fd4d85001f133fc696782b247a3ecf3 | p7@CHI3L1 |
| 8.3e-28 | FFCP PHASE1:Hg19::chr1:203148907..203148922,+#_bfc54014991219524dc7ccfdd3b7c4ff | p@chr1:203148907..203148922, + |
| 8.3e-28 | FFCP PHASE2:Hg19::chr1:203148907..203148922,+#_bfc54014991219524dc7ccfdd3b7c4ff | p@chr1:203148907..203148922, + |
| 8.7e-28 | FFCP PHASE1:Hg19::chr1:203148057..203148072,+#_8ca50791bad7b1775f3176b741e6e768 | p@chr1:203148057..203148072, + |
| 8.7e-28 | FFCP PHASE2:Hg19::chr1:203148057..203148072,+#_8ca50791bad7b1775f3176b741e6e768 | p@chr1:203148057..203148072, + |
| 1.82e-27 | FFCP PHASE2:Hg19::chr12:57628728..57628739,-#_d928caa1811b84ddc2ebf6f901cb437a | p@chr12:57628728..57628739, - |
| 1.82e-27 | FFCP PHASE1:Hg19::chr11:60680237..60680241,+#_d928caa1811b84ddc2ebf6f901cb437a | p@chr11:60680237..60680241, + |
| 1.82e-27 | FFCP PHASE1:Hg19::chr8:37535618..37535621,+#_d928caa1811b84ddc2ebf6f901cb437a | p@chr8:37535618..37535621, + |
| 1.82e-27 | FFCP PHASE2:Hg19::chr8:37535618..37535621,+#_d928caa1811b84ddc2ebf6f901cb437a | p@chr8:37535618..37535621, + |
| 1.82e-27 | FFCP PHASE1:Hg19::chr1:172145683..172145699,+#_d928caa1811b84ddc2ebf6f901cb437a | p@chr1:172145683..172145699, + |
| 1.82e-27 | FFCP PHASE1:Hg19::chr12:57628728..57628739,-#_d928caa1811b84ddc2ebf6f901cb437a | p@chr12:57628728..57628739, - |
