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{{CL
{{CL
|id=CL:0000147
|alt_id=
|name=pigment cell
|namespace=cell
|def="A pigment cell is a cell that contains pigment granules." [GOC:tfm]
|xref=
|is_a=CL:0000325
|synonym="chromatocyte" EXACT [];;"chromatophore" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A pigment cell is a cell that contains pigment granules." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000147
|is_a=CL:0000325
|is_obsolete=
|located_in=
|located_in=
|name=pigment cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="chromatocyte" EXACT [];;"chromatophore" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:30, 12 September 2014

Name:pigment cell
Namespace:FANTOM
Definition:"A pigment cell is a cell that contains pigment granules." [GOC:tfm]
Synonyms: "chromatocyte" EXACT []
"chromatophore" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000325(stuff accumulating cell)



Children


is a:CL:0000148 (melanocyte),CL:0000149 (visual pigment cell),CL:0000342 (pigment cell (sensu Vertebrata))

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000147 (pigment cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.97e-100FFCP PHASE2:Hg19::chr5:33984786..33984820,-#_8725e7a9cac0b8ac1b69baa83e236e25p2@SLC45A2
5.97e-100FFCP PHASE1:Hg19::chr5:33984786..33984820,-#_8725e7a9cac0b8ac1b69baa83e236e25p2@SLC45A2
1.79e-99FFCP PHASE1:Hg19::chrX:9707625..9707629,-#_50a12325e94f4044b49d26974d288dbap6@GPR143
1.79e-99FFCP PHASE2:Hg19::chrX:9707625..9707629,-#_50a12325e94f4044b49d26974d288dbap6@GPR143
2.98e-99FFCP PHASE1:Hg19::chr12:56349406..56349415,-#_3eb58874d1d1006e901fa538d2dd26b7p@chr12:56349406..56349415, -
2.98e-99FFCP PHASE2:Hg19::chr12:56349406..56349415,-#_3eb58874d1d1006e901fa538d2dd26b7p@chr12:56349406..56349415, -
4.6e-98FFCP PHASE1:Hg19::chr1:1497497..1497523,-#_ba05e893c4740751c73850e6632a0ab1p1@AK129493
4.6e-98FFCP PHASE1:Hg19::chr16:89986251..89986268,+#_ba05e893c4740751c73850e6632a0ab1p@chr16:89986251..89986268, +
4.6e-98FFCP PHASE1:Hg19::chr19:3557867..3557877,-#_ba05e893c4740751c73850e6632a0ab1p7@MFSD12
4.6e-98FFCP PHASE1:Hg19::chr9:12708978..12708990,+#_ba05e893c4740751c73850e6632a0ab1p@chr9:12708978..12708990, +
4.6e-98FFCP PHASE2:Hg19::chr9:12695585..12695593,+#_ba05e893c4740751c73850e6632a0ab1p24@TYRP1
4.6e-98FFCP PHASE1:Hg19::chr9:12695585..12695593,+#_ba05e893c4740751c73850e6632a0ab1p24@TYRP1
4.6e-98FFCP PHASE1:Hg19::chr6:4610902..4610913,+#_ba05e893c4740751c73850e6632a0ab1p1@ENST00000380106
4.6e-98FFCP PHASE2:Hg19::chr9:12708978..12708990,+#_ba05e893c4740751c73850e6632a0ab1p@chr9:12708978..12708990, +
4.6e-98FFCP PHASE2:Hg19::chr1:1497497..1497523,-#_ba05e893c4740751c73850e6632a0ab1p1@AK129493
4.6e-98FFCP PHASE1:Hg19::chr1:154401791..154401807,+#_ba05e893c4740751c73850e6632a0ab1p11@IL6R
4.6e-98FFCP PHASE2:Hg19::chr16:89986251..89986268,+#_ba05e893c4740751c73850e6632a0ab1p@chr16:89986251..89986268, +
4.6e-98FFCP PHASE2:Hg19::chr19:3557867..3557877,-#_ba05e893c4740751c73850e6632a0ab1p7@MFSD12
4.6e-98FFCP PHASE1:Hg19::chr9:12709332..12709345,+#_ba05e893c4740751c73850e6632a0ab1p@chr9:12709332..12709345, +
4.6e-98FFCP PHASE2:Hg19::chr9:12702367..12702377,+#_ba05e893c4740751c73850e6632a0ab1p@chr9:12702367..12702377, +
4.6e-98FFCP PHASE1:Hg19::chr9:12708060..12708071,-#_ba05e893c4740751c73850e6632a0ab1p@chr9:12708060..12708071, -
4.6e-98FFCP PHASE1:Hg19::chr9:12702367..12702377,+#_ba05e893c4740751c73850e6632a0ab1p@chr9:12702367..12702377, +
4.6e-98FFCP PHASE2:Hg19::chr9:12709332..12709345,+#_ba05e893c4740751c73850e6632a0ab1p@chr9:12709332..12709345, +
4.6e-98FFCP PHASE2:Hg19::chr6:4610902..4610913,+#_ba05e893c4740751c73850e6632a0ab1p1@ENST00000380106
4.6e-98FFCP PHASE2:Hg19::chr9:12708060..12708071,-#_ba05e893c4740751c73850e6632a0ab1p@chr9:12708060..12708071, -
4.6e-98FFCP PHASE2:Hg19::chr1:154401791..154401807,+#_ba05e893c4740751c73850e6632a0ab1p11@IL6R
4.6e-98FFCP PHASE2:Hg19::chr9:12693291..12693298,+#_ba05e893c4740751c73850e6632a0ab1p33@TYRP1
4.6e-98FFCP PHASE1:Hg19::chr9:12693291..12693298,+#_ba05e893c4740751c73850e6632a0ab1p33@TYRP1
1.93e-94FFCP PHASE1:Hg19::chr12:56351196..56351222,-#_ee46e08c25d7f1ca95f3ef248ceba1bap7@PMEL
1.93e-94FFCP PHASE2:Hg19::chr12:56351196..56351222,-#_ee46e08c25d7f1ca95f3ef248ceba1bap7@PMEL
1.9e-89FFCP PHASE1:Hg19::chr12:56351171..56351183,-#_3c6d9b2d93adb1af87a741fa703b02a8p8@PMEL
1.9e-89FFCP PHASE2:Hg19::chr12:56351171..56351183,-#_3c6d9b2d93adb1af87a741fa703b02a8p8@PMEL
2.14e-89FFCP PHASE2:Hg19::chr12:56351122..56351134,-#_2e13cd0c5a706d4f73c74489efe0b661p9@PMEL
2.14e-89FFCP PHASE1:Hg19::chr12:56351122..56351134,-#_2e13cd0c5a706d4f73c74489efe0b661p9@PMEL
1.08e-87FFCP PHASE2:Hg19::chr5:33984741..33984774,-#_0cfe299660f20db18507d5226252eba5p1@SLC45A2
1.08e-87FFCP PHASE1:Hg19::chr5:33984741..33984774,-#_0cfe299660f20db18507d5226252eba5p1@SLC45A2
6.07e-87FFCP PHASE1:Hg19::chr15:55562582..55562617,-#_7339a7e9f3f6838122df7bbdd5551905p3@RAB27A
6.07e-87FFCP PHASE2:Hg19::chr15:55562582..55562617,-#_7339a7e9f3f6838122df7bbdd5551905p3@RAB27A
5.51e-86FFCP PHASE1:Hg19::chr1:1497528..1497559,-#_5a5694563f9dd4f15368db5f2aa5ca23p2@AK129493
5.51e-86FFCP PHASE1:Hg19::chr19:3557918..3557927,-#_5a5694563f9dd4f15368db5f2aa5ca23p8@MFSD12
5.51e-86FFCP PHASE2:Hg19::chr1:1497528..1497559,-#_5a5694563f9dd4f15368db5f2aa5ca23p2@AK129493
5.51e-86FFCP PHASE2:Hg19::chr19:3557918..3557927,-#_5a5694563f9dd4f15368db5f2aa5ca23p8@MFSD12
6.25e-86FFCP PHASE1:Hg19::chr9:12704349..12704362,+#_4b1235c35d9d83cd6d09128ccbd16703p@chr9:12704349..12704362, +
6.25e-86FFCP PHASE2:Hg19::chr5:159894810..159894819,+#_4b1235c35d9d83cd6d09128ccbd16703p12@uc003lyl.3
6.25e-86FFCP PHASE1:Hg19::chr9:12708011..12708027,+#_4b1235c35d9d83cd6d09128ccbd16703p27@TYRP1
6.25e-86FFCP PHASE2:Hg19::chr9:12704349..12704362,+#_4b1235c35d9d83cd6d09128ccbd16703p@chr9:12704349..12704362, +
6.25e-86FFCP PHASE2:Hg19::chr9:12708011..12708027,+#_4b1235c35d9d83cd6d09128ccbd16703p27@TYRP1
6.25e-86FFCP PHASE2:Hg19::chr9:12701182..12701196,+#_4b1235c35d9d83cd6d09128ccbd16703p19@TYRP1
6.25e-86FFCP PHASE1:Hg19::chr9:12701182..12701196,+#_4b1235c35d9d83cd6d09128ccbd16703p19@TYRP1
6.25e-86FFCP PHASE2:Hg19::chr9:12693559..12693562,+#_4b1235c35d9d83cd6d09128ccbd16703p22@TYRP1
6.25e-86FFCP PHASE1:Hg19::chr9:12693559..12693562,+#_4b1235c35d9d83cd6d09128ccbd16703p22@TYRP1
6.25e-86FFCP PHASE1:Hg19::chr5:159894810..159894819,+#_4b1235c35d9d83cd6d09128ccbd16703p12@uc003lyl.3
7.09e-86FFCP PHASE2:Hg19::chr15:28344426..28344431,-#_55b692cd91ddd7307ed7e5d8d6b37fedp2@OCA2
7.09e-86FFCP PHASE1:Hg19::chr9:12704539..12704547,+#_55b692cd91ddd7307ed7e5d8d6b37fedp@chr9:12704539..12704547, +
7.09e-86FFCP PHASE2:Hg19::chr9:12704539..12704547,+#_55b692cd91ddd7307ed7e5d8d6b37fedp@chr9:12704539..12704547, +
7.09e-86FFCP PHASE1:Hg19::chr15:28344426..28344431,-#_55b692cd91ddd7307ed7e5d8d6b37fedp2@OCA2
8.04e-86FFCP PHASE2:Hg19::chr9:12695674..12695681,+#_dab4db6581a7234e0e8e5b6f86db1faap36@TYRP1
8.04e-86FFCP PHASE1:Hg19::chr9:12695674..12695681,+#_dab4db6581a7234e0e8e5b6f86db1faap36@TYRP1
9.12e-86FFCP PHASE1:Hg19::chr12:56351078..56351092,-#_ba223d47476a208700003a5a623e5309p@chr12:56351078..56351092, -
9.12e-86FFCP PHASE2:Hg19::chr12:56351078..56351092,-#_ba223d47476a208700003a5a623e5309p@chr12:56351078..56351092, -
2.84e-84FFCP PHASE1:Hg19::chr15:28360857..28360860,-#_33227129cbc7d1c50c735408406a4e43p@chr15:28360857..28360860, -
2.84e-84FFCP PHASE2:Hg19::chr19:3557800..3557811,-#_33227129cbc7d1c50c735408406a4e43p9@MFSD12
2.84e-84FFCP PHASE2:Hg19::chr9:12701691..12701717,+#_33227129cbc7d1c50c735408406a4e43p34@TYRP1
2.84e-84FFCP PHASE1:Hg19::chr9:12704666..12704671,+#_33227129cbc7d1c50c735408406a4e43p@chr9:12704666..12704671, +
2.84e-84FFCP PHASE2:Hg19::chr3:69951861..69951868,+#_33227129cbc7d1c50c735408406a4e43p@chr3:69951861..69951868, +
2.84e-84FFCP PHASE1:Hg19::chr9:12701691..12701717,+#_33227129cbc7d1c50c735408406a4e43p34@TYRP1
2.84e-84FFCP PHASE1:Hg19::chr6:4610888..4610895,+#_33227129cbc7d1c50c735408406a4e43p2@ENST00000380106
2.84e-84FFCP PHASE2:Hg19::chr1:212594718..212594723,+#_33227129cbc7d1c50c735408406a4e43p@chr1:212594718..212594723, +
2.84e-84FFCP PHASE2:Hg19::chr17:77923816..77923828,-#_33227129cbc7d1c50c735408406a4e43p@chr17:77923816..77923828, -
2.84e-84FFCP PHASE2:Hg19::chr2:128400821..128400830,-#_33227129cbc7d1c50c735408406a4e43p39@LIMS2
2.84e-84FFCP PHASE2:Hg19::chr1:1497446..1497455,-#_33227129cbc7d1c50c735408406a4e43p4@AK129493
2.84e-84FFCP PHASE2:Hg19::chr9:12704666..12704671,+#_33227129cbc7d1c50c735408406a4e43p@chr9:12704666..12704671, +
2.84e-84FFCP PHASE1:Hg19::chr9:12709200..12709209,+#_33227129cbc7d1c50c735408406a4e43p@chr9:12709200..12709209, +
2.84e-84FFCP PHASE1:Hg19::chr15:42694665..42694671,+#_33227129cbc7d1c50c735408406a4e43p16@CAPN3
2.84e-84FFCP PHASE1:Hg19::chr11:2920857..2920864,+#_33227129cbc7d1c50c735408406a4e43p13@SLC22A18
2.84e-84FFCP PHASE2:Hg19::chr15:42694665..42694671,+#_33227129cbc7d1c50c735408406a4e43p16@CAPN3
2.84e-84FFCP PHASE2:Hg19::chr9:12709200..12709209,+#_33227129cbc7d1c50c735408406a4e43p@chr9:12709200..12709209, +
2.84e-84FFCP PHASE2:Hg19::chr6:4610888..4610895,+#_33227129cbc7d1c50c735408406a4e43p2@ENST00000380106
2.84e-84FFCP PHASE1:Hg19::chr1:1497566..1497576,-#_33227129cbc7d1c50c735408406a4e43p3@AK129493
2.84e-84FFCP PHASE1:Hg19::chr17:77925869..77925876,-#_33227129cbc7d1c50c735408406a4e43p@chr17:77925869..77925876, -
2.84e-84FFCP PHASE2:Hg19::chr11:2920857..2920864,+#_33227129cbc7d1c50c735408406a4e43p13@SLC22A18
2.84e-84FFCP PHASE1:Hg19::chr22:20878094..20878105,+#_33227129cbc7d1c50c735408406a4e43p41@MED15
2.84e-84FFCP PHASE1:Hg19::chr15:28360793..28360804,-#_33227129cbc7d1c50c735408406a4e43p@chr15:28360793..28360804, -
2.84e-84FFCP PHASE1:Hg19::chr9:12709019..12709029,+#_33227129cbc7d1c50c735408406a4e43p@chr9:12709019..12709029, +
2.84e-84FFCP PHASE1:Hg19::chr19:3557800..3557811,-#_33227129cbc7d1c50c735408406a4e43p9@MFSD12
2.84e-84FFCP PHASE2:Hg19::chr15:28360793..28360804,-#_33227129cbc7d1c50c735408406a4e43p@chr15:28360793..28360804, -
2.84e-84FFCP PHASE1:Hg19::chr11:48066945..48066951,+#_33227129cbc7d1c50c735408406a4e43p@chr11:48066945..48066951, +
2.84e-84FFCP PHASE1:Hg19::chr3:69951861..69951868,+#_33227129cbc7d1c50c735408406a4e43p@chr3:69951861..69951868, +
2.84e-84FFCP PHASE1:Hg19::chr1:212594718..212594723,+#_33227129cbc7d1c50c735408406a4e43p@chr1:212594718..212594723, +
2.84e-84FFCP PHASE1:Hg19::chr17:77923816..77923828,-#_33227129cbc7d1c50c735408406a4e43p@chr17:77923816..77923828, -
2.84e-84FFCP PHASE2:Hg19::chr9:12709019..12709029,+#_33227129cbc7d1c50c735408406a4e43p@chr9:12709019..12709029, +
2.84e-84FFCP PHASE1:Hg19::chr2:128400821..128400830,-#_33227129cbc7d1c50c735408406a4e43p39@LIMS2
2.84e-84FFCP PHASE1:Hg19::chr1:1497446..1497455,-#_33227129cbc7d1c50c735408406a4e43p4@AK129493
2.84e-84FFCP PHASE2:Hg19::chr1:1497566..1497576,-#_33227129cbc7d1c50c735408406a4e43p3@AK129493
2.84e-84FFCP PHASE2:Hg19::chr11:48066945..48066951,+#_33227129cbc7d1c50c735408406a4e43p@chr11:48066945..48066951, +
2.84e-84FFCP PHASE2:Hg19::chr17:77925869..77925876,-#_33227129cbc7d1c50c735408406a4e43p@chr17:77925869..77925876, -
2.84e-84FFCP PHASE2:Hg19::chr22:20878094..20878105,+#_33227129cbc7d1c50c735408406a4e43p41@MED15
2.84e-84FFCP PHASE2:Hg19::chr15:28360857..28360860,-#_33227129cbc7d1c50c735408406a4e43p@chr15:28360857..28360860, -
1.19e-81FFCP PHASE1:Hg19::chr12:56350929..56350943,-#_6012a73029312d5edf37b61a5f68d083p@chr12:56350929..56350943, -
1.19e-81FFCP PHASE2:Hg19::chr12:56350929..56350943,-#_6012a73029312d5edf37b61a5f68d083p@chr12:56350929..56350943, -

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