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{{UBERON
{{UBERON
|id=UBERON:0009569
|alt_id=
|name=subdivision of trunk
|namespace=
|def=
|xref=FMA:25054;;SCTID:22943007;;XAO:0000054
|is_a=UBERON:0000475
|synonym="region of trunk" EXACT [FMA:25054];;"trunk subdivision" EXACT [FMA:25054]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009569
|is_a=UBERON:0000475
|is_obsolete=
|located_in=
|located_in=
|name=subdivision of trunk
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002100
|part_of=UBERON:0002100
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="region of trunk" EXACT [FMA:25054];;"trunk subdivision" EXACT [FMA:25054]
|union_of=
|xref=FMA:25054;;SCTID:22943007;;XAO:0000054
}}
}}

Latest revision as of 18:05, 12 September 2014

Name:subdivision of trunk
Namespace:FANTOM
Xrefs:
links:

FMA:25054
SCTID:22943007

XAO:0000054
Synonyms: "region of trunk" EXACT [FMA:25054]
"trunk subdivision" EXACT [FMA:25054]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000475(organism subdivision)
part_of:UBERON:0002100(trunk)



Children

is a:UBERON:0000915 (thoracic segment of trunk),UBERON:0000916 (abdomen),UBERON:0001443 (chest),UBERON:0002417 (abdominal segment of trunk)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009569 (subdivision of trunk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.18e-35FFCP PHASE1:Mm9::chr10:127188729..127188740,-#_fd42116cad14bd2693e5a57d0d7fd64bp3@Gpr182
4.18e-35FFCP PHASE2:Mm9::chr10:127188729..127188740,-#_fd42116cad14bd2693e5a57d0d7fd64bp3@Gpr182
4.44e-33FFCP PHASE1:Mm9::chr2:3031492..3031497,+#_0dd4031f20a1d53365e7ec0398d9f30ap3@Fam171a1
4.44e-33FFCP PHASE2:Mm9::chr2:3031492..3031497,+#_0dd4031f20a1d53365e7ec0398d9f30ap3@Fam171a1
1.33e-29FFCP PHASE1:Mm9::chr12:58298298..58298317,-#_f97933f2fc45ddd7d31ab8d45f6c7fbap3@Slc25a21
1.33e-29FFCP PHASE2:Mm9::chr12:58298298..58298317,-#_f97933f2fc45ddd7d31ab8d45f6c7fbap3@Slc25a21
2.52e-28FFCP PHASE2:Mm9::chr18:65185637..65185658,+#_aa2a18ade3ea56a864f95e33fc0400fep19@Nedd4l
2.52e-28FFCP PHASE1:Mm9::chr18:65185637..65185658,+#_aa2a18ade3ea56a864f95e33fc0400fep19@Nedd4l
3.81e-28FFCP PHASE1:Mm9::chr4:95246108..95246119,+#_115fcca785ee2cb3e460fcf7f37e2937p4@Fggy
3.81e-28FFCP PHASE2:Mm9::chr4:95246108..95246119,+#_115fcca785ee2cb3e460fcf7f37e2937p4@Fggy
6.52e-28FFCP PHASE1:Mm9::chr10:127188795..127188807,-#_cef3acb2451642f93f384a7284722eacp2@Gpr182
6.52e-28FFCP PHASE2:Mm9::chr10:127188795..127188807,-#_cef3acb2451642f93f384a7284722eacp2@Gpr182
5.79e-27FFCP PHASE1:Mm9::chr12:58298278..58298292,-#_5bb15e734f4cb14c1606d779ac1b0546p4@Slc25a21
5.79e-27FFCP PHASE2:Mm9::chr12:58298278..58298292,-#_5bb15e734f4cb14c1606d779ac1b0546p4@Slc25a21
2.13e-26FFCP PHASE2:Mm9::chr18:39026735..39026746,-#_eefd64f2b9a8b64cb2f100bc9f466749p8@Fgf1
2.13e-26FFCP PHASE1:Mm9::chr18:39026735..39026746,-#_eefd64f2b9a8b64cb2f100bc9f466749p8@Fgf1
2.89e-26FFCP PHASE2:Mm9::chr12:58298249..58298262,-#_1767bb8c57009a8f8db2df86f204f9bep5@Slc25a21
2.89e-26FFCP PHASE1:Mm9::chr12:58298249..58298262,-#_1767bb8c57009a8f8db2df86f204f9bep5@Slc25a21
7.94e-26FFCP PHASE2:Mm9::chr4:129255765..129255776,-#_2ddb47cf084d99c658de51f5e2974cf5p2@Fam167b
7.94e-26FFCP PHASE1:Mm9::chr4:129255765..129255776,-#_2ddb47cf084d99c658de51f5e2974cf5p2@Fam167b
1.59e-25FFCP PHASE1:Mm9::chr8:73247943..73247958,+#_6ff185055f6c298cbde102db0cb9ce2ep3@Pde4c
1.59e-25FFCP PHASE2:Mm9::chr8:73247943..73247958,+#_6ff185055f6c298cbde102db0cb9ce2ep3@Pde4c
1.72e-25FFCP PHASE2:Mm9::chr6:34129226..34129246,+#_32796f6013aaa1ac9d328bce456dd5f9p2@ENSMUST00000145644
1.72e-25FFCP PHASE1:Mm9::chr6:34129226..34129246,+#_32796f6013aaa1ac9d328bce456dd5f9p2@ENSMUST00000145644
1.97e-25FFCP PHASE2:Mm9::chr10:58904532..58904548,-#_9041169ad2ccb67abbfba29443fc2854p3@Oit3
1.97e-25FFCP PHASE1:Mm9::chr10:58904532..58904548,-#_9041169ad2ccb67abbfba29443fc2854p3@Oit3
4.73e-25FFCP PHASE1:Mm9::chr4:149377244..149377258,-#_381f6a448931dc71d331c397198d6bacp3@H6pd
4.73e-25FFCP PHASE2:Mm9::chr4:149377244..149377258,-#_381f6a448931dc71d331c397198d6bacp3@H6pd
5.2e-25FFCP PHASE2:Mm9::chr11:49423199..49423230,+#_dd63e04f743daef53a46b67f0c3ccd3ap1@Flt4
5.2e-25FFCP PHASE1:Mm9::chr11:49423199..49423230,+#_dd63e04f743daef53a46b67f0c3ccd3ap1@Flt4
8.93e-25FFCP PHASE2:Mm9::chr9:44611035..44611044,-#_861fe420c416d9bab6916b62c36d8115p4@Ttc36
8.93e-25FFCP PHASE1:Mm9::chr9:44611035..44611044,-#_861fe420c416d9bab6916b62c36d8115p4@Ttc36
1.04e-24FFCP PHASE2:Mm9::chr16:34807407..34807430,+#_f9153bf18a9056d383d833b7fba16e74p@chr16:34807407..34807430, +
1.04e-24FFCP PHASE1:Mm9::chr16:34807407..34807430,+#_f9153bf18a9056d383d833b7fba16e74p@chr16:34807407..34807430, +
1.42e-24FFCP PHASE2:Hg19::chr17:202579..202625,-#_1d91652e10d345d4df44bdfe4a0a844fp1@RPH3AL
1.42e-24FFCP PHASE1:Hg19::chr17:202579..202625,-#_1d91652e10d345d4df44bdfe4a0a844fp1@RPH3AL
1.58e-24FFCP PHASE2:Mm9::chr10:124765412..124765425,-#_8d35886ad26deea6d1463a147a4ed2d1p5@Slc16a7
1.58e-24FFCP PHASE1:Mm9::chr10:124765412..124765425,-#_8d35886ad26deea6d1463a147a4ed2d1p5@Slc16a7
2.5e-24FFCP PHASE2:Mm9::chr11:60622345..60622377,-#_d631a650668264c39f362445c6431b57p@chr11:60622345..60622377, -
2.5e-24FFCP PHASE1:Mm9::chr11:60622345..60622377,-#_d631a650668264c39f362445c6431b57p@chr11:60622345..60622377, -
2.92e-24FFCP PHASE1:Mm9::chr16:34807285..34807303,+#_2df05609a8d0eae250249da71946fcddp@chr16:34807285..34807303, +
2.92e-24FFCP PHASE2:Mm9::chr16:34807285..34807303,+#_2df05609a8d0eae250249da71946fcddp@chr16:34807285..34807303, +
3.01e-24FFCP PHASE1:Mm9::chr10:127188763..127188793,-#_73763677c5a29790bdc3f2c8a49f424ap1@Gpr182
3.01e-24FFCP PHASE2:Mm9::chr10:127188763..127188793,-#_73763677c5a29790bdc3f2c8a49f424ap1@Gpr182
3.43e-24FFCP PHASE1:Mm9::chr11:7097807..7097814,+#_5e6202265b4130249fd99d356060ffa4p2@Igfbp1
3.43e-24FFCP PHASE2:Mm9::chr11:7097807..7097814,+#_5e6202265b4130249fd99d356060ffa4p2@Igfbp1
6.15e-24FFCP PHASE2:Mm9::chr16:37621995..37622022,-#_c67f628ba1f0cd5875ae720d8c2c243dp@chr16:37621995..37622022, -
6.15e-24FFCP PHASE1:Mm9::chr16:37621995..37622022,-#_c67f628ba1f0cd5875ae720d8c2c243dp@chr16:37621995..37622022, -
6.24e-24FFCP PHASE1:Mm9::chr13:23931270..23931311,+#_bf05d0e302f0ff12e61a13ea246e57e8p2@Slc17a3
6.24e-24FFCP PHASE2:Mm9::chr13:23931270..23931311,+#_bf05d0e302f0ff12e61a13ea246e57e8p2@Slc17a3
9.84e-24FFCP PHASE1:Mm9::chr19:12707997..12708015,+#_670b0aeca6c38dbfa019d189337513cap1@Glyat
9.84e-24FFCP PHASE2:Mm9::chr19:12707997..12708015,+#_670b0aeca6c38dbfa019d189337513cap1@Glyat
1.16e-23FFCP PHASE2:Mm9::chr13:23931467..23931489,+#_3560f5d1baf3de8638fef5a742236012p3@Slc17a3
1.16e-23FFCP PHASE1:Mm9::chr13:23931467..23931489,+#_3560f5d1baf3de8638fef5a742236012p3@Slc17a3
1.18e-23FFCP PHASE2:Mm9::chr3:94737023..94737030,+#_fcbb3888e683d5095617a68aee88a0f8p2@Selenbp1
1.18e-23FFCP PHASE1:Mm9::chr3:94737023..94737030,+#_fcbb3888e683d5095617a68aee88a0f8p2@Selenbp1
1.32e-23FFCP PHASE2:Mm9::chr2:26436544..26436559,+#_f62cfb54a8b639d003f5a99209c76b98p4@Egfl7
1.32e-23FFCP PHASE1:Mm9::chr2:26436544..26436559,+#_f62cfb54a8b639d003f5a99209c76b98p4@Egfl7
1.73e-23FFCP PHASE1:Mm9::chr4:96330769..96330789,-#_d91a9cdbbd6f13704f3bc80951a342d7p2@Cyp2j5
1.73e-23FFCP PHASE2:Mm9::chr4:96330769..96330789,-#_d91a9cdbbd6f13704f3bc80951a342d7p2@Cyp2j5
2.58e-23FFCP PHASE2:Mm9::chr16:37580223..37580237,+#_6676b99228e0f79a54b2d433b2bba1e7p4@Hgd
2.58e-23FFCP PHASE1:Mm9::chr16:37580223..37580237,+#_6676b99228e0f79a54b2d433b2bba1e7p4@Hgd
2.66e-23FFCP PHASE2:Mm9::chrX:147001144..147001172,+#_d3fca5c34b122beb9f989e4a581ea499p2@Alas2
2.66e-23FFCP PHASE1:Mm9::chrX:147001144..147001172,+#_d3fca5c34b122beb9f989e4a581ea499p2@Alas2
2.93e-23FFCP PHASE2:Mm9::chr1:141398256..141398267,+#_b89cff788fc6116b95b957207220ee85p3@F13b
2.93e-23FFCP PHASE1:Mm9::chr1:141398256..141398267,+#_b89cff788fc6116b95b957207220ee85p3@F13b
3.74e-23FFCP PHASE2:Mm9::chr15:82624876..82624892,-#_4776edd06afece646a578e8d2dfdbf3ap5@Cyp2d26
3.74e-23FFCP PHASE1:Mm9::chr15:82624876..82624892,-#_4776edd06afece646a578e8d2dfdbf3ap5@Cyp2d26
3.84e-23FFCP PHASE2:Mm9::chr10:95305558..95305580,-#_20529ab384a6b1979d6cc7243a65e064p@chr10:95305558..95305580, -
3.84e-23FFCP PHASE1:Mm9::chr10:95305558..95305580,-#_20529ab384a6b1979d6cc7243a65e064p@chr10:95305558..95305580, -
4.26e-23FFCP PHASE1:Mm9::chr18:44761374..44761391,-#_a78f860835281914dbfb89e1eb964f52p@chr18:44761374..44761391, -
4.26e-23FFCP PHASE2:Mm9::chr18:44761374..44761391,-#_a78f860835281914dbfb89e1eb964f52p@chr18:44761374..44761391, -
4.77e-23FFCP PHASE1:Mm9::chr9:44609886..44609901,-#_0a24157b82538bcdbc34c7107d2bf909p@chr9:44609886..44609901, -
4.77e-23FFCP PHASE2:Mm9::chr9:44609886..44609901,-#_0a24157b82538bcdbc34c7107d2bf909p@chr9:44609886..44609901, -
5.73e-23FFCP PHASE2:Mm9::chr4:95246137..95246153,+#_e2b968e3adbc4cc016385598ad72bff1p3@Fggy
5.73e-23FFCP PHASE1:Mm9::chr4:95246137..95246153,+#_e2b968e3adbc4cc016385598ad72bff1p3@Fggy
6.37e-23FFCP PHASE1:Mm9::chr4:140176541..140176565,-#_6429ce7c6ab7ff1840a8ab9423e5321dp@chr4:140176541..140176565, -
6.37e-23FFCP PHASE2:Mm9::chr4:140176541..140176565,-#_6429ce7c6ab7ff1840a8ab9423e5321dp@chr4:140176541..140176565, -
6.44e-23FFCP PHASE1:Mm9::chr4:150283537..150283568,-#_17a1b01dcf547133aacbce6fd26c6a8ap5@Park7
6.44e-23FFCP PHASE2:Mm9::chr4:150283537..150283568,-#_17a1b01dcf547133aacbce6fd26c6a8ap5@Park7
7.0e-23FFCP PHASE1:Mm9::chr9:44609861..44609874,-#_3f29623ddfb496a80e9efa6163400615p@chr9:44609861..44609874, -
7.0e-23FFCP PHASE2:Mm9::chr9:44609861..44609874,-#_3f29623ddfb496a80e9efa6163400615p@chr9:44609861..44609874, -
7.2e-23FFCP PHASE2:Mm9::chr15:99733367..99733388,+#_6713d55e887a8a5072425c23a02d094ap@chr15:99733367..99733388, +
7.2e-23FFCP PHASE1:Mm9::chr15:99733367..99733388,+#_6713d55e887a8a5072425c23a02d094ap@chr15:99733367..99733388, +
1.49e-22FFCP PHASE1:Mm9::chr14:118994097..118994118,-#_bc55132a569df09d09df2eca8842cc9dp@chr14:118994097..118994118, -
1.49e-22FFCP PHASE2:Mm9::chr14:118994097..118994118,-#_bc55132a569df09d09df2eca8842cc9dp@chr14:118994097..118994118, -
1.77e-22FFCP PHASE1:Mm9::chr13:58224772..58224789,-#_016e3cb29d12ed5b6b3e103a9804a86bp@chr13:58224772..58224789, -
1.77e-22FFCP PHASE2:Mm9::chr13:58224772..58224789,-#_016e3cb29d12ed5b6b3e103a9804a86bp@chr13:58224772..58224789, -
2.06e-22FFCP PHASE1:Mm9::chr6:3938967..3938987,-#_7da0ca4f1fb227abbeb79b976247eb0bp@chr6:3938967..3938987, -
2.06e-22FFCP PHASE2:Mm9::chr6:3938967..3938987,-#_7da0ca4f1fb227abbeb79b976247eb0bp@chr6:3938967..3938987, -
2.13e-22FFCP PHASE1:Mm9::chr16:37580298..37580310,+#_befdab4788717a43a31938dd40d9e3d6p3@Hgd
2.13e-22FFCP PHASE2:Mm9::chr16:37580298..37580310,+#_befdab4788717a43a31938dd40d9e3d6p3@Hgd
2.16e-22FFCP PHASE2:Mm9::chrX:72625134..72625162,-#_445c8ea8148989c862954d5bc1efad4dp1@F8
2.16e-22FFCP PHASE1:Mm9::chrX:72625134..72625162,-#_445c8ea8148989c862954d5bc1efad4dp1@F8
2.7e-22FFCP PHASE2:Hg19::chr10:99344428..99344441,+#_9fa31316baaeb3ea179769b8d1fdf1bep5@PI4K2A
2.7e-22FFCP PHASE1:Hg19::chr10:99344428..99344441,+#_9fa31316baaeb3ea179769b8d1fdf1bep5@PI4K2A
2.9e-22FFCP PHASE1:Mm9::chr15:9265320..9265378,+#_2265c8aeabd3b48f68acf9e80088bf95p1@Ugt3a2
2.9e-22FFCP PHASE2:Mm9::chr15:9265320..9265378,+#_2265c8aeabd3b48f68acf9e80088bf95p1@Ugt3a2
3.51e-22FFCP PHASE2:Mm9::chr16:33057098..33057124,+#_16114a8c950619f073f80730a95429c8p3@Gm11810, p3@Gm14279, p3@LOC100505045, p3@LOC100505110, p3@Rpl35a-ps7, p4@Rpl35a
3.51e-22FFCP PHASE1:Mm9::chr16:33057098..33057124,+#_16114a8c950619f073f80730a95429c8p3@Gm11810, p3@Gm14279, p3@LOC100505045, p3@LOC100505110, p3@Rpl35a-ps7, p4@Rpl35a

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