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{{UBERON
{{UBERON
|id=UBERON:0008874
|alt_id=
|name=pulmonary acinus
|namespace=
|def="the part of the airway consisting of a respiratory bronchiole and all of its branches" [MP:0010911, Wikipedia:Acinus#The_Lungs]
|xref=FMA:7313;;ncithesaurus:Pulmonary_Acinus;;SCTID:361365004
|is_a=UBERON:0000061;;UBERON:0000077
|synonym="primary pulmonary lobule" EXACT [FMA:7313]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the part of the airway consisting of a respiratory bronchiole and all of its branches" [MP:0010911, Wikipedia:Acinus#The_Lungs]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0008874
|is_a=UBERON:0010368
|is_obsolete=
|located_in=
|located_in=
|name=pulmonary acinus
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002048
|part_of=UBERON:0002048
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="primary pulmonary lobule" EXACT [FMA:7313]
|union_of=
|xref=FMA:7313;;ncithesaurus:Pulmonary_Acinus;;SCTID:361365004
}}
}}

Latest revision as of 18:04, 12 September 2014

Name:pulmonary acinus
Namespace:FANTOM
Definition:"the part of the airway consisting of a respiratory bronchiole and all of its branches" [MP:0010911, Wikipedia:Acinus#The_Lungs]
Xrefs:
links:

FMA:7313
ncithesaurus:Pulmonary_Acinus

SCTID:361365004
Synonyms: "primary pulmonary lobule" EXACT [FMA:7313]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0010368(pulmonary lobule)
part_of:UBERON:0002048(lung)



Children

part of:UBERON:0002169 (alveolar sac)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008874 (pulmonary acinus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.39e-66FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_1c84cd40cafbf351af24044fa46391e3p1@ENST00000418699, p1@ENST00000432330
2.39e-66FFCP PHASE1:Hg19::chr3:87647430..87647437,-#_1c84cd40cafbf351af24044fa46391e3p@chr3:87647430..87647437, -
2.39e-66FFCP PHASE1:Hg19::chr16:11118533..11118538,+#_1c84cd40cafbf351af24044fa46391e3p12@CLEC16A
2.39e-66FFCP PHASE2:Hg19::chr10:101690855..101690861,-#_1c84cd40cafbf351af24044fa46391e3p14@DNMBP
2.39e-66FFCP PHASE2:Hg19::chr6:137314390..137314394,-#_1c84cd40cafbf351af24044fa46391e3p1@ENST00000418699, p1@ENST00000432330
2.39e-66FFCP PHASE1:Hg19::chr10:101690855..101690861,-#_1c84cd40cafbf351af24044fa46391e3p14@DNMBP
2.39e-66FFCP PHASE2:Hg19::chr3:87647430..87647437,-#_1c84cd40cafbf351af24044fa46391e3p@chr3:87647430..87647437, -
2.39e-66FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_1c84cd40cafbf351af24044fa46391e3p12@CLEC16A
2.39e-66FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_1c84cd40cafbf351af24044fa46391e3p9@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr7:63539651..63539654,+#_1c84cd40cafbf351af24044fa46391e3p1@ENST00000430271
2.39e-66FFCP PHASE2:Hg19::chr10:101691056..101691064,-#_1c84cd40cafbf351af24044fa46391e3p13@DNMBP
2.39e-66FFCP PHASE2:Hg19::chr20:2779140..2779150,-#_1c84cd40cafbf351af24044fa46391e3p9@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr7:63539651..63539654,+#_1c84cd40cafbf351af24044fa46391e3p1@ENST00000430271
2.39e-66FFCP PHASE1:Hg19::chr10:101691056..101691064,-#_1c84cd40cafbf351af24044fa46391e3p13@DNMBP
2.39e-66FFCP PHASE1:Hg19::chr20:2779199..2779205,-#_1c84cd40cafbf351af24044fa46391e3p13@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr20:2779199..2779205,-#_1c84cd40cafbf351af24044fa46391e3p13@CPXM1
2.39e-66FFCP PHASE1:Hg19::chrX:48056224..48056233,-#_1c84cd40cafbf351af24044fa46391e3p1@SSX5
2.39e-66FFCP PHASE1:Hg19::chr20:2779236..2779242,-#_1c84cd40cafbf351af24044fa46391e3p12@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr20:2779236..2779242,-#_1c84cd40cafbf351af24044fa46391e3p12@CPXM1
2.39e-66FFCP PHASE2:Hg19::chrX:48056224..48056233,-#_1c84cd40cafbf351af24044fa46391e3p1@SSX5
2.39e-66FFCP PHASE2:Hg19::chr17:63511856..63511858,-#_1c84cd40cafbf351af24044fa46391e3p@chr17:63511856..63511858, -
2.39e-66FFCP PHASE2:Hg19::chr17:13574618..13574636,-#_1c84cd40cafbf351af24044fa46391e3p@chr17:13574618..13574636, -
2.39e-66FFCP PHASE1:Hg19::chr17:63511856..63511858,-#_1c84cd40cafbf351af24044fa46391e3p@chr17:63511856..63511858, -
2.39e-66FFCP PHASE1:Hg19::chr14:36536932..36536937,-#_1c84cd40cafbf351af24044fa46391e3p@chr14:36536932..36536937, -
2.39e-66FFCP PHASE1:Hg19::chr20:2779313..2779314,-#_1c84cd40cafbf351af24044fa46391e3p16@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr17:13574618..13574636,-#_1c84cd40cafbf351af24044fa46391e3p@chr17:13574618..13574636, -
2.39e-66FFCP PHASE2:Hg19::chr20:2779313..2779314,-#_1c84cd40cafbf351af24044fa46391e3p16@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr14:36536932..36536937,-#_1c84cd40cafbf351af24044fa46391e3p@chr14:36536932..36536937, -
1.53e-44FFCP PHASE2:Hg19::chr2:191696381..191696384,-#_eb95a7183b9b5c689d0ab37f688fcf94p@chr2:191696381..191696384, -
1.53e-44FFCP PHASE1:Hg19::chr2:191696381..191696384,-#_eb95a7183b9b5c689d0ab37f688fcf94p@chr2:191696381..191696384, -
4.27e-34FFCP PHASE1:Hg19::chr9:140350189..140350212,-#_3dfcb511099955116f5fe587d3c6916fp30@NELF
4.27e-34FFCP PHASE2:Hg19::chr9:140350189..140350212,-#_3dfcb511099955116f5fe587d3c6916fp30@NELF
4.27e-34FFCP PHASE2:Hg19::chr10:101691199..101691208,-#_3dfcb511099955116f5fe587d3c6916fp11@DNMBP
4.27e-34FFCP PHASE2:Hg19::chr8:122157279..122157284,-#_3dfcb511099955116f5fe587d3c6916fp@chr8:122157279..122157284, -
4.27e-34FFCP PHASE1:Hg19::chr10:101691199..101691208,-#_3dfcb511099955116f5fe587d3c6916fp11@DNMBP
4.27e-34FFCP PHASE1:Hg19::chr4:169956294..169956301,-#_3dfcb511099955116f5fe587d3c6916fp@chr4:169956294..169956301, -
4.27e-34FFCP PHASE1:Hg19::chr8:122157279..122157284,-#_3dfcb511099955116f5fe587d3c6916fp@chr8:122157279..122157284, -
4.27e-34FFCP PHASE2:Hg19::chr4:169956294..169956301,-#_3dfcb511099955116f5fe587d3c6916fp@chr4:169956294..169956301, -
4.27e-34FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_3dfcb511099955116f5fe587d3c6916fp3@FMR1NB
4.27e-34FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_3dfcb511099955116f5fe587d3c6916fp3@FMR1NB
4.27e-34FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_3dfcb511099955116f5fe587d3c6916fp30@PDP1
4.27e-34FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_3dfcb511099955116f5fe587d3c6916fp30@PDP1
4.27e-34FFCP PHASE2:Hg19::chr11:104005546..104005596,-#_3dfcb511099955116f5fe587d3c6916fp@chr11:104005546..104005596, -
4.27e-34FFCP PHASE2:Hg19::chr10:101691101..101691115,-#_3dfcb511099955116f5fe587d3c6916fp7@DNMBP
4.27e-34FFCP PHASE1:Hg19::chr11:104005546..104005596,-#_3dfcb511099955116f5fe587d3c6916fp@chr11:104005546..104005596, -
4.27e-34FFCP PHASE1:Hg19::chr10:101691101..101691115,-#_3dfcb511099955116f5fe587d3c6916fp7@DNMBP
4.27e-34FFCP PHASE2:Hg19::chr9:103785643..103785646,-#_3dfcb511099955116f5fe587d3c6916fp@chr9:103785643..103785646, -
4.27e-34FFCP PHASE1:Hg19::chr9:103785643..103785646,-#_3dfcb511099955116f5fe587d3c6916fp@chr9:103785643..103785646, -
4.27e-34FFCP PHASE2:Hg19::chr11:41809203..41809208,-#_3dfcb511099955116f5fe587d3c6916fp@chr11:41809203..41809208, -
4.27e-34FFCP PHASE2:Hg19::chr11:106266838..106266843,+#_3dfcb511099955116f5fe587d3c6916fp@chr11:106266838..106266843, +
4.27e-34FFCP PHASE1:Hg19::chr11:41809203..41809208,-#_3dfcb511099955116f5fe587d3c6916fp@chr11:41809203..41809208, -
4.27e-34FFCP PHASE1:Hg19::chr11:106266838..106266843,+#_3dfcb511099955116f5fe587d3c6916fp@chr11:106266838..106266843, +
5.96e-34FFCP PHASE2:Hg19::chr17:63533845..63533851,-#_8037b57d31138aae04490ccc214ca0a4p@chr17:63533845..63533851, -
5.96e-34FFCP PHASE1:Hg19::chr2:118846114..118846125,+#_8037b57d31138aae04490ccc214ca0a4p6@INSIG2
5.96e-34FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_8037b57d31138aae04490ccc214ca0a4p@chr6:45405393..45405412, +
5.96e-34FFCP PHASE1:Hg19::chr17:63533845..63533851,-#_8037b57d31138aae04490ccc214ca0a4p@chr17:63533845..63533851, -
5.96e-34FFCP PHASE2:Hg19::chr2:118846114..118846125,+#_8037b57d31138aae04490ccc214ca0a4p6@INSIG2
5.96e-34FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_8037b57d31138aae04490ccc214ca0a4p@chr6:45405393..45405412, +
5.96e-34FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_8037b57d31138aae04490ccc214ca0a4p@chr6:45399533..45399540, +
5.96e-34FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_8037b57d31138aae04490ccc214ca0a4p@chr3:139035972..139036016, -
5.96e-34FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_8037b57d31138aae04490ccc214ca0a4p@chr6:45399533..45399540, +
5.96e-34FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_8037b57d31138aae04490ccc214ca0a4p@chr3:139035972..139036016, -
5.96e-34FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_8037b57d31138aae04490ccc214ca0a4p@chr6:45399245..45399258, +
5.96e-34FFCP PHASE1:Hg19::chr20:2795718..2795731,+#_8037b57d31138aae04490ccc214ca0a4p5@C20orf141
5.96e-34FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_8037b57d31138aae04490ccc214ca0a4p@chr6:45399245..45399258, +
5.96e-34FFCP PHASE2:Hg19::chr20:2795718..2795731,+#_8037b57d31138aae04490ccc214ca0a4p5@C20orf141
5.96e-34FFCP PHASE1:Hg19::chr15:55806847..55806854,-#_8037b57d31138aae04490ccc214ca0a4p@chr15:55806847..55806854, -
5.96e-34FFCP PHASE1:Hg19::chr4:171012844..171012850,-#_8037b57d31138aae04490ccc214ca0a4p12@AADAT
5.96e-34FFCP PHASE1:Hg19::chr6:46985426..46985427,-#_8037b57d31138aae04490ccc214ca0a4p@chr6:46985426..46985427, -
5.96e-34FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_8037b57d31138aae04490ccc214ca0a4p@chr6:45399263..45399274, +
5.96e-34FFCP PHASE2:Hg19::chr15:55806847..55806854,-#_8037b57d31138aae04490ccc214ca0a4p@chr15:55806847..55806854, -
5.96e-34FFCP PHASE1:Hg19::chr12:65386452..65386492,-#_8037b57d31138aae04490ccc214ca0a4p@chr12:65386452..65386492, -
5.96e-34FFCP PHASE1:Hg19::chr6:169691363..169691375,-#_8037b57d31138aae04490ccc214ca0a4p@chr6:169691363..169691375, -
5.96e-34FFCP PHASE2:Hg19::chr6:46985426..46985427,-#_8037b57d31138aae04490ccc214ca0a4p@chr6:46985426..46985427, -
5.96e-34FFCP PHASE2:Hg19::chr4:171012844..171012850,-#_8037b57d31138aae04490ccc214ca0a4p12@AADAT
5.96e-34FFCP PHASE1:Hg19::chr9:140349856..140349859,-#_8037b57d31138aae04490ccc214ca0a4p36@NELF
5.96e-34FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_8037b57d31138aae04490ccc214ca0a4p@chr6:45399263..45399274, +
5.96e-34FFCP PHASE2:Hg19::chr12:65386452..65386492,-#_8037b57d31138aae04490ccc214ca0a4p@chr12:65386452..65386492, -
5.96e-34FFCP PHASE2:Hg19::chr6:169691363..169691375,-#_8037b57d31138aae04490ccc214ca0a4p@chr6:169691363..169691375, -
5.96e-34FFCP PHASE2:Hg19::chr9:140349856..140349859,-#_8037b57d31138aae04490ccc214ca0a4p36@NELF
5.96e-34FFCP PHASE1:Hg19::chr6:141743015..141743025,+#_8037b57d31138aae04490ccc214ca0a4p@chr6:141743015..141743025, +
5.96e-34FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_8037b57d31138aae04490ccc214ca0a4p@chr6:45399294..45399301, +
5.96e-34FFCP PHASE2:Hg19::chr6:141743015..141743025,+#_8037b57d31138aae04490ccc214ca0a4p@chr6:141743015..141743025, +
5.96e-34FFCP PHASE1:Hg19::chr9:140349915..140349924,-#_8037b57d31138aae04490ccc214ca0a4p34@NELF
5.96e-34FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_8037b57d31138aae04490ccc214ca0a4p@chr6:45399294..45399301, +
5.96e-34FFCP PHASE1:Hg19::chr1:119837700..119837705,+#_8037b57d31138aae04490ccc214ca0a4p@chr1:119837700..119837705, +
5.96e-34FFCP PHASE1:Hg19::chr1:93054640..93054674,-#_8037b57d31138aae04490ccc214ca0a4p@chr1:93054640..93054674, -
5.96e-34FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_8037b57d31138aae04490ccc214ca0a4p@chr6:45405332..45405343, +
5.96e-34FFCP PHASE2:Hg19::chr9:140349915..140349924,-#_8037b57d31138aae04490ccc214ca0a4p34@NELF
5.96e-34FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_8037b57d31138aae04490ccc214ca0a4p@chr6:45405332..45405343, +
5.96e-34FFCP PHASE2:Hg19::chr1:119837700..119837705,+#_8037b57d31138aae04490ccc214ca0a4p@chr1:119837700..119837705, +
5.96e-34FFCP PHASE2:Hg19::chr1:93054640..93054674,-#_8037b57d31138aae04490ccc214ca0a4p@chr1:93054640..93054674, -
1.71e-30FFCP PHASE2:Hg19::chr2:75751179..75751194,+#_d502fa9cf975296ef954b4f404042c34p1@BC018659
1.71e-30FFCP PHASE1:Hg19::chr2:75751179..75751194,+#_d502fa9cf975296ef954b4f404042c34p1@BC018659
1.59e-27FFCP PHASE1:Hg19::chr14:29047235..29047244,+#_dcae9d220511a11da9c1ae295486703ap@chr14:29047235..29047244, +
1.59e-27FFCP PHASE2:Hg19::chr14:29047235..29047244,+#_dcae9d220511a11da9c1ae295486703ap@chr14:29047235..29047244, +
3.56e-27FFCP PHASE2:Hg19::chr17:171082..171101,+#_47c89581ec5267c8cbbe84952bf6540ap@chr17:171082..171101, +
3.56e-27FFCP PHASE1:Hg19::chr17:171082..171101,+#_47c89581ec5267c8cbbe84952bf6540ap@chr17:171082..171101, +
7.93e-25FFCP PHASE1:Hg19::chr7:27163592..27163605,-#_22d7886ec61ffbd7490e5ca67b1e704dp@chr7:27163592..27163605, -
7.93e-25FFCP PHASE2:Hg19::chr7:27163592..27163605,-#_22d7886ec61ffbd7490e5ca67b1e704dp@chr7:27163592..27163605, -

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