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{{UBERON
{{UBERON
|id=UBERON:0005631
|name=extraembryonic membrane
|namespace=
|def="Intrinsic membrane that arises from embryonic germ layers and grow to surround the developing embryo." [ISBN10:0073040584]
|xref=SCTID:362840007
|is_a=UBERON:0000158;;UBERON:0000478
|synonym=
|comment=Taxon notes: stuctures homologous to the four extraembryonic membranes appear in mammals [ISBN10:0073040584 "Vertebrates, Kardong"]
|alt_id=
|alt_id=
|disjoint_from=
|comment=AO notes: EHDAA2 is a mereological sum. Taxon notes: stuctures homologous to the four extraembryonic membranes appear in mammals [ISBN10:0073040584 "Vertebrates, Kardong"]
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Intrinsic membrane that arises from embryonic germ layers and grow to surround the developing embryo." [ISBN10:0073040584]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005631
|is_a=UBERON:0000158 ;;UBERON:0000478
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=extraembryonic membrane
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004716;;UBERON:0016887
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=EHDAA2:0004714;;SCTID:362840007
}}
}}

Latest revision as of 17:54, 12 September 2014

Name:extraembryonic membrane
Namespace:FANTOM
Definition:"Intrinsic membrane that arises from embryonic germ layers and grow to surround the developing embryo." [ISBN10:0073040584]
Xrefs:
links:

EHDAA2:0004714

SCTID:362840007
Comments:AO notes: EHDAA2 is a mereological sum. Taxon notes: stuctures homologous to the four extraembryonic membranes appear in mammals [ISBN10:0073040584 "Vertebrates, Kardong"]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000158(membranous layer),UBERON:0000478(extraembryonic structure)
part_of:UBERON:0004716(conceptus),UBERON:0016887(entire extraembryonic component)



Children

is a:UBERON:0000305 (amnion),UBERON:0001040 (yolk sac),UBERON:0003124 (chorion),UBERON:0004340 (allantois)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005631 (extraembryonic membrane), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.64e-155FFCP PHASE1:Hg19::chr3:55384975..55384986,-#_560813053f1cb718103d113871c1458dp1@ENST00000469806
7.64e-155FFCP PHASE2:Hg19::chr3:55384975..55384986,-#_560813053f1cb718103d113871c1458dp1@ENST00000469806
6.02e-144FFCP PHASE2:Hg19::chr11:8857295..8857310,-#_ecf70f08679bca5e12b7a5395346d1d3p21@ST5
6.02e-144FFCP PHASE1:Hg19::chr11:8857295..8857310,-#_ecf70f08679bca5e12b7a5395346d1d3p21@ST5
7.71e-144FFCP PHASE2:Hg19::chr11:8857248..8857269,-#_b7d1ba60b9d1b1242f6eb055d0ac599fp16@ST5
7.71e-144FFCP PHASE1:Hg19::chr11:8857248..8857269,-#_b7d1ba60b9d1b1242f6eb055d0ac599fp16@ST5
6.53e-141FFCP PHASE2:Hg19::chr2:237683156..237683171,+#_3e80101386e55bb2ae4fef684a2c4dc1p@chr2:237683156..237683171, +
6.53e-141FFCP PHASE1:Hg19::chr2:237683156..237683171,+#_3e80101386e55bb2ae4fef684a2c4dc1p@chr2:237683156..237683171, +
1.35e-139FFCP PHASE2:Hg19::chr19:36592982..36592993,+#_977ea57a64499897b8e8dc2296fcc22ep@chr19:36592982..36592993, +
1.35e-139FFCP PHASE1:Hg19::chr19:36592982..36592993,+#_977ea57a64499897b8e8dc2296fcc22ep@chr19:36592982..36592993, +
1.05e-134FFCP PHASE2:Hg19::chr11:8857215..8857232,-#_32a3586c4570ba900f10d37a259aa63ap17@ST5
1.05e-134FFCP PHASE1:Hg19::chr11:8857215..8857232,-#_32a3586c4570ba900f10d37a259aa63ap17@ST5
1.43e-129FFCP PHASE1:Hg19::chr15:68344995..68345013,+#_45b944d62ac0b7092c01520e182c43e2p@chr15:68344995..68345013, +
1.43e-129FFCP PHASE2:Hg19::chr15:68344995..68345013,+#_45b944d62ac0b7092c01520e182c43e2p@chr15:68344995..68345013, +
1.6e-126FFCP PHASE1:Hg19::chr2:237683212..237683239,+#_3a8f462c1904101a6f47476655b96aedp@chr2:237683212..237683239, +
1.6e-126FFCP PHASE2:Hg19::chr2:237683212..237683239,+#_3a8f462c1904101a6f47476655b96aedp@chr2:237683212..237683239, +
1.01e-125FFCP PHASE2:Hg19::chr2:25862154..25862172,-#_08ac73775acaadb7b8b677477fa6f32dp14@DTNB
1.01e-125FFCP PHASE1:Hg19::chr2:25862154..25862172,-#_08ac73775acaadb7b8b677477fa6f32dp14@DTNB
6.97e-121FFCP PHASE2:Hg19::chr2:237682954..237682971,+#_d14bf4ab16a929bb776170ab6bf52e79p@chr2:237682954..237682971, +
6.97e-121FFCP PHASE1:Hg19::chr2:237682954..237682971,+#_d14bf4ab16a929bb776170ab6bf52e79p@chr2:237682954..237682971, +
8.75e-121FFCP PHASE2:Hg19::chr2:237682990..237683009,+#_89c9efc3ed541b108eceab30ad0b8512p@chr2:237682990..237683009, +
8.75e-121FFCP PHASE1:Hg19::chr2:237682990..237683009,+#_89c9efc3ed541b108eceab30ad0b8512p@chr2:237682990..237683009, +
8.22e-119FFCP PHASE2:Hg19::chr19:36592925..36592948,+#_58ac5b65ef803875fe2dd6f3868e63f5p@chr19:36592925..36592948, +
8.22e-119FFCP PHASE1:Hg19::chr19:36592925..36592948,+#_58ac5b65ef803875fe2dd6f3868e63f5p@chr19:36592925..36592948, +
2.31e-113FFCP PHASE2:Hg19::chr18:6286777..6286797,+#_3108a72a1c438b988571c282d60a6360p@chr18:6286777..6286797, +
2.31e-113FFCP PHASE1:Hg19::chr18:6286777..6286797,+#_3108a72a1c438b988571c282d60a6360p@chr18:6286777..6286797, +
7.03e-112FFCP PHASE1:Hg19::chr2:237683203..237683210,+#_8a6dffd383b7815a199cd3d3e35b6e0bp@chr2:237683203..237683210, +
7.03e-112FFCP PHASE1:Hg19::chr17:2278441..2278454,+#_8a6dffd383b7815a199cd3d3e35b6e0bp13@SGSM2
7.03e-112FFCP PHASE2:Hg19::chr2:237683203..237683210,+#_8a6dffd383b7815a199cd3d3e35b6e0bp@chr2:237683203..237683210, +
7.03e-112FFCP PHASE2:Hg19::chr17:2278441..2278454,+#_8a6dffd383b7815a199cd3d3e35b6e0bp13@SGSM2
7.87e-108FFCP PHASE1:Hg19::chr11:1946293..1946319,+#_4706c6d313badab34516fdbd3653f09ap11@TNNT3
7.87e-108FFCP PHASE2:Hg19::chr11:1946293..1946319,+#_4706c6d313badab34516fdbd3653f09ap11@TNNT3
3.01e-103FFCP PHASE1:Hg19::chr6:12161831..12161855,+#_74d6cc8748d487ede0fcb2ad5985482ap@chr6:12161831..12161855, +
3.01e-103FFCP PHASE2:Hg19::chr6:12161831..12161855,+#_74d6cc8748d487ede0fcb2ad5985482ap@chr6:12161831..12161855, +
4.29e-103FFCP PHASE1:Hg19::chr20:61287795..61287809,+#_cdc2150fa72a2b5ab6744055a5f41d5dp4@SLCO4A1
4.29e-103FFCP PHASE2:Hg19::chr20:61287795..61287809,+#_cdc2150fa72a2b5ab6744055a5f41d5dp4@SLCO4A1
4.86e-100FFCP PHASE1:Hg19::chr13:43636294..43636306,+#_63acbdc17969d610febd2c338e34067bp@chr13:43636294..43636306, +
4.86e-100FFCP PHASE2:Hg19::chr13:43636294..43636306,+#_63acbdc17969d610febd2c338e34067bp@chr13:43636294..43636306, +
1.22e-99FFCP PHASE2:Hg19::chr19:36592910..36592917,+#_feacc4900ac2e0262ffbcbbcf06cfc54p@chr19:36592910..36592917, +
1.22e-99FFCP PHASE2:Hg19::chr10:134227398..134227410,+#_feacc4900ac2e0262ffbcbbcf06cfc54p@chr10:134227398..134227410, +
1.22e-99FFCP PHASE1:Hg19::chr19:36592910..36592917,+#_feacc4900ac2e0262ffbcbbcf06cfc54p@chr19:36592910..36592917, +
1.22e-99FFCP PHASE1:Hg19::chr10:134227398..134227410,+#_feacc4900ac2e0262ffbcbbcf06cfc54p@chr10:134227398..134227410, +
1.38e-99FFCP PHASE1:Hg19::chr2:191897854..191897865,-#_0a2a40f771beb1bcde4f0de93bcc0ff0p@chr2:191897854..191897865, -
1.38e-99FFCP PHASE2:Hg19::chr2:191897854..191897865,-#_0a2a40f771beb1bcde4f0de93bcc0ff0p@chr2:191897854..191897865, -
1.57e-99FFCP PHASE2:Hg19::chr17:2278481..2278491,+#_3b3f6801ae987a7b3fc5b25f1ef7cdf3p14@SGSM2
1.57e-99FFCP PHASE1:Hg19::chr17:2278481..2278491,+#_3b3f6801ae987a7b3fc5b25f1ef7cdf3p14@SGSM2
2.03e-99FFCP PHASE1:Hg19::chr6:31083761..31083775,-#_f72b0a2c4acb3a95fbc7bed6df1be05fp@chr6:31083761..31083775, -
2.03e-99FFCP PHASE2:Hg19::chr6:31083761..31083775,-#_f72b0a2c4acb3a95fbc7bed6df1be05fp@chr6:31083761..31083775, -
2.63e-99FFCP PHASE2:Hg19::chr2:237682972..237682977,+#_426e9fb720f96c0d1f8c79c4d896d858p@chr2:237682972..237682977, +
2.63e-99FFCP PHASE1:Hg19::chr2:237682972..237682977,+#_426e9fb720f96c0d1f8c79c4d896d858p@chr2:237682972..237682977, +
4.6e-98FFCP PHASE2:Hg19::chr9:88126069..88126080,-#_5e4866fc74d882dcb8cb6f953f25186bp@chr9:88126069..88126080, -
4.6e-98FFCP PHASE2:Hg19::chr20:61288222..61288232,+#_5e4866fc74d882dcb8cb6f953f25186bp14@SLCO4A1
4.6e-98FFCP PHASE1:Hg19::chr14:104202639..104202646,-#_5e4866fc74d882dcb8cb6f953f25186bp@chr14:104202639..104202646, -
4.6e-98FFCP PHASE1:Hg19::chr10:131344593..131344605,+#_5e4866fc74d882dcb8cb6f953f25186bp@chr10:131344593..131344605, +
4.6e-98FFCP PHASE1:Hg19::chrX:48374277..48374289,+#_5e4866fc74d882dcb8cb6f953f25186bp@chrX:48374277..48374289, +
4.6e-98FFCP PHASE2:Hg19::chr20:61288249..61288259,+#_5e4866fc74d882dcb8cb6f953f25186bp12@SLCO4A1
4.6e-98FFCP PHASE1:Hg19::chr20:61288222..61288232,+#_5e4866fc74d882dcb8cb6f953f25186bp14@SLCO4A1
4.6e-98FFCP PHASE2:Hg19::chr14:104202639..104202646,-#_5e4866fc74d882dcb8cb6f953f25186bp@chr14:104202639..104202646, -
4.6e-98FFCP PHASE1:Hg19::chr9:88126069..88126080,-#_5e4866fc74d882dcb8cb6f953f25186bp@chr9:88126069..88126080, -
4.6e-98FFCP PHASE1:Hg19::chr20:61288249..61288259,+#_5e4866fc74d882dcb8cb6f953f25186bp12@SLCO4A1
4.6e-98FFCP PHASE2:Hg19::chrX:48374277..48374289,+#_5e4866fc74d882dcb8cb6f953f25186bp@chrX:48374277..48374289, +
4.6e-98FFCP PHASE2:Hg19::chr10:131344593..131344605,+#_5e4866fc74d882dcb8cb6f953f25186bp@chr10:131344593..131344605, +
1.4e-94FFCP PHASE2:Hg19::chr17:38875395..38875406,-#_dda8c08922caad45ec0db14fa5cf6800p2@KRT223P
1.4e-94FFCP PHASE1:Hg19::chr17:38875395..38875406,-#_dda8c08922caad45ec0db14fa5cf6800p2@KRT223P
7.56e-90FFCP PHASE1:Hg19::chr19:36592959..36592975,+#_2375bd6b641b9ee6f441c5aefb087e56p@chr19:36592959..36592975, +
7.56e-90FFCP PHASE2:Hg19::chr19:36592959..36592975,+#_2375bd6b641b9ee6f441c5aefb087e56p@chr19:36592959..36592975, +
1.9e-89FFCP PHASE1:Hg19::chr2:237683038..237683048,+#_4b8615ec8a2c6caa14e12894edc6e2d7p@chr2:237683038..237683048, +
1.9e-89FFCP PHASE2:Hg19::chr2:237683038..237683048,+#_4b8615ec8a2c6caa14e12894edc6e2d7p@chr2:237683038..237683048, +
1.43e-88FFCP PHASE1:Hg19::chr5:128301279..128301283,+#_3bab5686e2d82cc9b0b75e7d7abd07d2p5@SLC27A6
1.43e-88FFCP PHASE2:Hg19::chr5:128301279..128301283,+#_3bab5686e2d82cc9b0b75e7d7abd07d2p5@SLC27A6
1.36e-87FFCP PHASE1:Hg19::chr17:38875358..38875392,-#_222bdd70632e393e3208a1116aeb590ep1@KRT223P
1.36e-87FFCP PHASE2:Hg19::chr17:38875358..38875392,-#_222bdd70632e393e3208a1116aeb590ep1@KRT223P
2.47e-87FFCP PHASE1:Hg19::chr11:1949886..1949907,+#_d5ea88aa89ee09323a2fa901cab7eea6p@chr11:1949886..1949907, +
2.47e-87FFCP PHASE2:Hg19::chr11:1949886..1949907,+#_d5ea88aa89ee09323a2fa901cab7eea6p@chr11:1949886..1949907, +
2.93e-87FFCP PHASE2:Hg19::chr1:147232669..147232676,-#_f6e6ef0b41fbff632ebfd5a0000de579p4@GJA5
2.93e-87FFCP PHASE1:Hg19::chr1:147232669..147232676,-#_f6e6ef0b41fbff632ebfd5a0000de579p4@GJA5
8.19e-87FFCP PHASE2:Hg19::chr11:122288906..122288919,-#_023712146058fceec7dd6b6a1b14ff75p@chr11:122288906..122288919, -
8.19e-87FFCP PHASE1:Hg19::chr11:122288906..122288919,-#_023712146058fceec7dd6b6a1b14ff75p@chr11:122288906..122288919, -
1.58e-86FFCP PHASE2:Mm9::chr7:17798686..17798694,+#_5eea2626842173d34dcdc9c346c80264p@chr7:17798686..17798694, +
1.58e-86FFCP PHASE1:Mm9::chrX:136335482..136335502,+#_5eea2626842173d34dcdc9c346c80264p3@Cldn2
1.58e-86FFCP PHASE1:Mm9::chr5:114862554..114862564,+#_5eea2626842173d34dcdc9c346c80264p@chr5:114862554..114862564, +
1.58e-86FFCP PHASE1:Mm9::chr1:71787899..71787904,-#_5eea2626842173d34dcdc9c346c80264p@chr1:71787899..71787904, -
1.58e-86FFCP PHASE1:Mm9::chr13:27337674..27337690,+#_5eea2626842173d34dcdc9c346c80264p@chr13:27337674..27337690, +
1.58e-86FFCP PHASE1:Mm9::chr7:17788797..17788806,+#_5eea2626842173d34dcdc9c346c80264p4@Psg29
1.58e-86FFCP PHASE2:Mm9::chr13:61265572..61265576,-#_5eea2626842173d34dcdc9c346c80264p2@Ctsr
1.58e-86FFCP PHASE2:Mm9::chr1:63260883..63260896,-#_5eea2626842173d34dcdc9c346c80264p3@Gpr1
1.58e-86FFCP PHASE2:Mm9::chr13:27341334..27341356,-#_5eea2626842173d34dcdc9c346c80264p@chr13:27341334..27341356, -
1.58e-86FFCP PHASE1:Mm9::chr13:27341334..27341356,-#_5eea2626842173d34dcdc9c346c80264p@chr13:27341334..27341356, -
1.58e-86FFCP PHASE2:Mm9::chr15:78342035..78342046,-#_5eea2626842173d34dcdc9c346c80264p@chr15:78342035..78342046, -
1.58e-86FFCP PHASE1:Mm9::chr9:111108246..111108253,+#_5eea2626842173d34dcdc9c346c80264p@chr9:111108246..111108253, +
1.58e-86FFCP PHASE1:Mm9::chrX:136335507..136335518,+#_5eea2626842173d34dcdc9c346c80264p5@Cldn2
1.58e-86FFCP PHASE1:Mm9::chr5:115211954..115211984,-#_5eea2626842173d34dcdc9c346c80264p@chr5:115211954..115211984, -
1.58e-86FFCP PHASE1:Mm9::chr15:78342035..78342046,-#_5eea2626842173d34dcdc9c346c80264p@chr15:78342035..78342046, -
1.58e-86FFCP PHASE2:Mm9::chr13:61040767..61040776,-#_5eea2626842173d34dcdc9c346c80264p@chr13:61040767..61040776, -
1.58e-86FFCP PHASE1:Mm9::chr9:57927144..57927163,+#_5eea2626842173d34dcdc9c346c80264p19@Stra6
1.58e-86FFCP PHASE1:Mm9::chr14:102036767..102036774,-#_5eea2626842173d34dcdc9c346c80264p@chr14:102036767..102036774, -
1.58e-86FFCP PHASE2:Mm9::chr13:27335609..27335622,+#_5eea2626842173d34dcdc9c346c80264p@chr13:27335609..27335622, +
1.58e-86FFCP PHASE2:Mm9::chr11:55223511..55223524,-#_5eea2626842173d34dcdc9c346c80264p@chr11:55223511..55223524, -
1.58e-86FFCP PHASE1:Mm9::chr13:27335609..27335622,+#_5eea2626842173d34dcdc9c346c80264p@chr13:27335609..27335622, +
1.58e-86FFCP PHASE1:Mm9::chr13:61041994..61042014,-#_5eea2626842173d34dcdc9c346c80264p@chr13:61041994..61042014, -

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