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|is_a=UBERON:0003891
|is_a=UBERON:0003891
|synonym="interstitium" EXACT []
|synonym="interstitium" EXACT []
|comment=todo - make connective tissue
|comment=Editors note: specify differentia from stroma
|alt_id=
|alt_id=
|disjoint_from=
|disjoint_from=
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|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
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|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Latest revision as of 17:06, 26 June 2012

Name:interstitial tissue
Definition:"connective tissue between the cellular elements of a structure." [1]
Xrefs:
links:

FMA:86301

SCTID:85293002
Synonyms: "interstitium" EXACT []
Comments:Editors note: specify differentia from stroma

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003891(stroma)



Children

is a:UBERON:0005215 (kidney interstitium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005169 (interstitial tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.34e-79FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_e3d38e68bde9bf18fb2ca8b75f2cb3a8p@chr2:133426030..133426041, -
2.34e-79FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_e3d38e68bde9bf18fb2ca8b75f2cb3a8p@chr2:133426030..133426041, -
3.49e-79FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_ef551828da25e1aab0a2906f13b34c36p23@TTC39A
3.49e-79FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_ef551828da25e1aab0a2906f13b34c36p23@TTC39A
2.03e-66FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_4ae0430e30c91303f5a309481f932e3ep@chr2:133426106..133426117, -
2.03e-66FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_4ae0430e30c91303f5a309481f932e3ep@chr2:133426106..133426117, -
1.46e-50FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_e4dc31026a11852be47a791f673c7801p8@PAX2
1.46e-50FFCP PHASE2:Hg19::chr10:134535354..134535366,-#_e4dc31026a11852be47a791f673c7801p@chr10:134535354..134535366, -
1.46e-50FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_e4dc31026a11852be47a791f673c7801p8@PAX2
1.46e-50FFCP PHASE1:Hg19::chr10:134535354..134535366,-#_e4dc31026a11852be47a791f673c7801p@chr10:134535354..134535366, -
3.11e-50FFCP PHASE2:Hg19::chr17:17480803..17480814,-#_82253e608f6d6c5bab7975625b1742a4p19@PEMT
3.11e-50FFCP PHASE1:Hg19::chr17:17480803..17480814,-#_82253e608f6d6c5bab7975625b1742a4p19@PEMT
4.52e-50FFCP PHASE1:Hg19::chr9:81641483..81641491,-#_1f6afb859ecdda631726ca868d009238p@chr9:81641483..81641491, -
4.52e-50FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_1f6afb859ecdda631726ca868d009238p10@PAX2
4.52e-50FFCP PHASE2:Hg19::chr9:81641483..81641491,-#_1f6afb859ecdda631726ca868d009238p@chr9:81641483..81641491, -
4.52e-50FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_1f6afb859ecdda631726ca868d009238p10@PAX2
8.98e-41FFCP PHASE2:Hg19::chr17:171082..171101,+#_94206c14c8fab051c78567f7d489dbb9p@chr17:171082..171101, +
8.98e-41FFCP PHASE1:Hg19::chr17:171082..171101,+#_94206c14c8fab051c78567f7d489dbb9p@chr17:171082..171101, +
1.1e-40FFCP PHASE1:Hg19::chr3:172384246..172384250,+#_c5d7991cc74560315eba6fab9eae2dfap@chr3:172384246..172384250, +
1.1e-40FFCP PHASE2:Hg19::chr3:172384246..172384250,+#_c5d7991cc74560315eba6fab9eae2dfap@chr3:172384246..172384250, +
1.64e-40FFCP PHASE1:Hg19::chr1:45087902..45087912,+#_c41be6302b0cf5fc428eb1c1331af1abp@chr1:45087902..45087912, +
1.64e-40FFCP PHASE2:Hg19::chr1:45087902..45087912,+#_c41be6302b0cf5fc428eb1c1331af1abp@chr1:45087902..45087912, +
3.68e-40FFCP PHASE2:Hg19::chr10:102505552..102505563,+#_e336df50f381732b2a727fb7978c0a8fp5@PAX2
3.68e-40FFCP PHASE1:Hg19::chr10:102505552..102505563,+#_e336df50f381732b2a727fb7978c0a8fp5@PAX2
8.2e-37FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_8b60c8f6c3b57dd8048339de0ec00c3ep6@PAX2
8.2e-37FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_8b60c8f6c3b57dd8048339de0ec00c3ep6@PAX2
9.84e-37FFCP PHASE1:Hg19::chr9:126131131..126131159,+#_fa15dd9faa4022b6b1aaafc6d9c3b723p3@CRB2
9.84e-37FFCP PHASE2:Hg19::chr9:126131131..126131159,+#_fa15dd9faa4022b6b1aaafc6d9c3b723p3@CRB2
6.0e-34FFCP PHASE2:Hg19::chr2:113984760..113984792,+#_4e63979ac94282e132cdc63490b71a51p@chr2:113984760..113984792, +
6.0e-34FFCP PHASE1:Hg19::chr2:113984760..113984792,+#_4e63979ac94282e132cdc63490b71a51p@chr2:113984760..113984792, +
7.05e-34FFCP PHASE1:Hg19::chr7:27164585..27164612,-#_712fca1e1d79ec94d09d22fb31661ca8p@chr7:27164585..27164612, -
7.05e-34FFCP PHASE2:Hg19::chr11:555661..555679,+#_712fca1e1d79ec94d09d22fb31661ca8p@chr11:555661..555679, +
7.05e-34FFCP PHASE2:Hg19::chr1:858638..858648,+#_712fca1e1d79ec94d09d22fb31661ca8p@chr1:858638..858648, +
7.05e-34FFCP PHASE2:Hg19::chr7:27164585..27164612,-#_712fca1e1d79ec94d09d22fb31661ca8p@chr7:27164585..27164612, -
7.05e-34FFCP PHASE1:Hg19::chr11:555661..555679,+#_712fca1e1d79ec94d09d22fb31661ca8p@chr11:555661..555679, +
7.05e-34FFCP PHASE1:Hg19::chr1:858638..858648,+#_712fca1e1d79ec94d09d22fb31661ca8p@chr1:858638..858648, +
8.39e-34FFCP PHASE2:Hg19::chr10:73848549..73848564,-#_9bdc87c21e44992f06167c90a24ad142p13@SPOCK2
8.39e-34FFCP PHASE1:Hg19::chr10:73848549..73848564,-#_9bdc87c21e44992f06167c90a24ad142p13@SPOCK2
1.17e-33FFCP PHASE2:Hg19::chr11:118477144..118477156,+#_736b82234e12f15f9d67f22d7cefaf83p25@PHLDB1
1.17e-33FFCP PHASE1:Hg19::chr11:118477144..118477156,+#_736b82234e12f15f9d67f22d7cefaf83p25@PHLDB1
3.35e-32FFCP PHASE2:Hg19::chr2:693362..693373,+#_a7fc25254aac2b1cf88bf13bd3e211d4p@chr2:693362..693373, +
3.35e-32FFCP PHASE1:Hg19::chr2:693362..693373,+#_a7fc25254aac2b1cf88bf13bd3e211d4p@chr2:693362..693373, +
2.54e-31FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_8ed4c1b3bbabdf76397278a0481f3105p1@RIPPLY1
2.54e-31FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_8ed4c1b3bbabdf76397278a0481f3105p1@RIPPLY1
8.05e-30FFCP PHASE1:Hg19::chr17:171147..171161,+#_e50bf7cb7858ef213cc4473533b98369p@chr17:171147..171161, +
8.05e-30FFCP PHASE2:Hg19::chr17:171147..171161,+#_e50bf7cb7858ef213cc4473533b98369p@chr17:171147..171161, +
2.96e-29FFCP PHASE2:Hg19::chr2:165477405..165477418,-#_a3094292e4734da11e292903b041ebfcp@chr2:165477405..165477418, -
2.96e-29FFCP PHASE1:Hg19::chr2:165477405..165477418,-#_a3094292e4734da11e292903b041ebfcp@chr2:165477405..165477418, -
4.55e-29FFCP PHASE1:Hg19::chr1:874109..874143,+#_8de8baf40785779460a2bbd731d48cd3p@chr1:874109..874143, +
4.55e-29FFCP PHASE2:Hg19::chr1:874109..874143,+#_8de8baf40785779460a2bbd731d48cd3p@chr1:874109..874143, +
1.43e-28FFCP PHASE1:Hg19::chr2:113999199..113999214,+#_f35e9e782b2c6beacd22554e0153f3fcp@chr2:113999199..113999214, +
1.43e-28FFCP PHASE2:Hg19::chr2:113999199..113999214,+#_f35e9e782b2c6beacd22554e0153f3fcp@chr2:113999199..113999214, +
1.83e-27FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_2961c116c7eec98ee1e46fdd47fb6d6bp@chr16:86604624..86604648, +
1.83e-27FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_2961c116c7eec98ee1e46fdd47fb6d6bp7@LRRN4
1.83e-27FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_2961c116c7eec98ee1e46fdd47fb6d6bp7@LRRN4
1.83e-27FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_2961c116c7eec98ee1e46fdd47fb6d6bp@chr16:86604624..86604648, +
2.74e-27FFCP PHASE2:Hg19::chr19:56091499..56091517,-#_382e5d09028222c9052ca88ec4432275p@chr19:56091499..56091517, -
2.74e-27FFCP PHASE1:Hg19::chr19:56091499..56091517,-#_382e5d09028222c9052ca88ec4432275p@chr19:56091499..56091517, -
2.78e-26FFCP PHASE2:Hg19::chr9:112260040..112260045,+#_ff723f90f0edeb8e86dd4e4ee7e88701p@chr9:112260040..112260045, +
2.78e-26FFCP PHASE1:Hg19::chr9:112260040..112260045,+#_ff723f90f0edeb8e86dd4e4ee7e88701p@chr9:112260040..112260045, +
4.63e-26FFCP PHASE1:Hg19::chr22:30645170..30645182,-#_8e995b997933c6134941ad96f52537c0p@chr22:30645170..30645182, -
4.63e-26FFCP PHASE2:Hg19::chr22:30645170..30645182,-#_8e995b997933c6134941ad96f52537c0p@chr22:30645170..30645182, -
7.14e-26FFCP PHASE2:Hg19::chr8:22419319..22419327,+#_e0b18b6197fd065cd4919f8b6677fab2p@chr8:22419319..22419327, +
7.14e-26FFCP PHASE1:Hg19::chr8:22419319..22419327,+#_e0b18b6197fd065cd4919f8b6677fab2p@chr8:22419319..22419327, +
9.18e-26FFCP PHASE2:Hg19::chr17:15555143..15555150,-#_c776d2977094599200d181515bc97b31p12@TRIM16
9.18e-26FFCP PHASE1:Hg19::chr10:102505946..102505949,+#_c776d2977094599200d181515bc97b31p14@PAX2
9.18e-26FFCP PHASE1:Hg19::chr11:32457397..32457404,-#_c776d2977094599200d181515bc97b31p15@WT1
9.18e-26FFCP PHASE1:Hg19::chr8:28196820..28196830,+#_c776d2977094599200d181515bc97b31p@chr8:28196820..28196830, +
9.18e-26FFCP PHASE1:Hg19::chr2:176973165..176973169,-#_c776d2977094599200d181515bc97b31p@chr2:176973165..176973169, -
9.18e-26FFCP PHASE1:Hg19::chr20:6031540..6031548,-#_c776d2977094599200d181515bc97b31p@chr20:6031540..6031548, -
9.18e-26FFCP PHASE1:Hg19::chr17:15555143..15555150,-#_c776d2977094599200d181515bc97b31p12@TRIM16
9.18e-26FFCP PHASE2:Hg19::chr6:31833005..31833017,-#_c776d2977094599200d181515bc97b31p@chr6:31833005..31833017, -
9.18e-26FFCP PHASE2:Hg19::chr8:28196820..28196830,+#_c776d2977094599200d181515bc97b31p@chr8:28196820..28196830, +
9.18e-26FFCP PHASE2:Hg19::chr2:176973165..176973169,-#_c776d2977094599200d181515bc97b31p@chr2:176973165..176973169, -
9.18e-26FFCP PHASE2:Hg19::chr20:6031540..6031548,-#_c776d2977094599200d181515bc97b31p@chr20:6031540..6031548, -
9.18e-26FFCP PHASE2:Hg19::chr10:102505946..102505949,+#_c776d2977094599200d181515bc97b31p14@PAX2
9.18e-26FFCP PHASE1:Hg19::chr6:31833005..31833017,-#_c776d2977094599200d181515bc97b31p@chr6:31833005..31833017, -
9.18e-26FFCP PHASE2:Hg19::chr11:32457397..32457404,-#_c776d2977094599200d181515bc97b31p15@WT1
2.37e-25FFCP PHASE1:Hg19::chr7:27160553..27160560,+#_8ddd295c81cbd5147747ec1815c1a2f8p1@ENST00000523364, p1@uc010kux.1
2.37e-25FFCP PHASE2:Hg19::chr7:27160553..27160560,+#_8ddd295c81cbd5147747ec1815c1a2f8p1@ENST00000523364, p1@uc010kux.1
4.38e-25FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_7a9e40698fd60567cf228123ffaae2b0p16@HOXA10
4.38e-25FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_7a9e40698fd60567cf228123ffaae2b0p16@HOXA10
4.43e-25FFCP PHASE2:Hg19::chr1:149908263..149908281,-#_4156a653c907dd2df83e35ed01fbe6aep6@MTMR11
4.43e-25FFCP PHASE1:Hg19::chr1:149908263..149908281,-#_4156a653c907dd2df83e35ed01fbe6aep6@MTMR11
7.09e-25FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_0326c07f9f57e3aeb43d559db60b1086p4@PAX2
7.09e-25FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_0326c07f9f57e3aeb43d559db60b1086p4@PAX2
3.76e-24FFCP PHASE1:Hg19::chr1:46797583..46797614,-#_fdddfb34c7537254c89326b63f8792d9p@chr1:46797583..46797614, -
3.76e-24FFCP PHASE2:Hg19::chr1:46797583..46797614,-#_fdddfb34c7537254c89326b63f8792d9p@chr1:46797583..46797614, -
7.62e-24FFCP PHASE1:Hg19::chr6:94129519..94129544,+#_0746ea23ad1cfb3b28500b8d5b2f3fcap@chr6:94129519..94129544, +
7.62e-24FFCP PHASE2:Hg19::chr6:94129519..94129544,+#_0746ea23ad1cfb3b28500b8d5b2f3fcap@chr6:94129519..94129544, +
8.02e-24FFCP PHASE2:Hg19::chr2:693380..693398,+#_8e433479b841f85bdbf0a875719db79ap@chr2:693380..693398, +
8.02e-24FFCP PHASE1:Hg19::chr2:693380..693398,+#_8e433479b841f85bdbf0a875719db79ap@chr2:693380..693398, +
8.98e-24FFCP PHASE1:Hg19::chr2:133426077..133426103,-#_10060a8f9f4ab2b27d40e3bf79369757p@chr2:133426077..133426103, -
8.98e-24FFCP PHASE2:Hg19::chr2:133426077..133426103,-#_10060a8f9f4ab2b27d40e3bf79369757p@chr2:133426077..133426103, -
1.99e-23FFCP PHASE2:Hg19::chr11:32457350..32457361,+#_18d2812e68f562382660a0b02c3459eep5@WT1-AS
1.99e-23FFCP PHASE1:Hg19::chr11:32457350..32457361,+#_18d2812e68f562382660a0b02c3459eep5@WT1-AS
4.37e-23FFCP PHASE1:Hg19::chr2:176968471..176968476,-#_4440ad66eb1013f312de0e7581a82c8fp@chr2:176968471..176968476, -
4.37e-23FFCP PHASE2:Hg19::chr2:176968471..176968476,-#_4440ad66eb1013f312de0e7581a82c8fp@chr2:176968471..176968476, -
4.89e-23FFCP PHASE2:Hg19::chr12:15592437..15592438,+#_e4f2bbbb705862955dd697ddbdbf8c75p1@ENST00000469884
4.89e-23FFCP PHASE1:Hg19::chr12:15592437..15592438,+#_e4f2bbbb705862955dd697ddbdbf8c75p1@ENST00000469884

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