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{{UBERON
{{UBERON
|id=UBERON:0004733
|alt_id=
|name=segmental subdivision of hindbrain
|namespace=
|def="An organ segment that is part of a hindbrain [Obol]." [OBOL:automatic]
|xref=FMA:61998
|is_a=UBERON:0002616;;UBERON:0004732
|synonym="hindbrain segment" EXACT [FMA:61998];;"segment of hindbrain" EXACT [FMA:61998]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An organ segment that is part of a hindbrain [Obol]." [OBOL:automatic]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004733
|is_a=UBERON:0004121 ;;UBERON:0004732 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|name=segmental subdivision of hindbrain
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002028
|part_of=UBERON:0002028
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="hindbrain segment" EXACT [FMA:61998];;"segment of hindbrain" EXACT [FMA:61998]
|union_of=
|xref=FMA:61998
}}
}}

Latest revision as of 17:47, 12 September 2014

Name:segmental subdivision of hindbrain
Namespace:FANTOM
Definition:"An organ segment that is part of a hindbrain [Obol]." [OBOL:automatic]
Xrefs:
links:
FMA:61998
Synonyms: "hindbrain segment" EXACT [FMA:61998]
"segment of hindbrain" EXACT [FMA:61998]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0004732(segmental subdivision of nervous system),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0002028(hindbrain)



Children

is a:UBERON:0001895 (metencephalon),UBERON:0005290 (myelencephalon)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004733 (segmental subdivision of hindbrain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.71e-110FFCP PHASE2:Hg19::chr2:72381655..72381673,-#_43c9a9266ae98add9f451c42669592adp@chr2:72381655..72381673, -
1.71e-110FFCP PHASE1:Hg19::chr2:72381655..72381673,-#_43c9a9266ae98add9f451c42669592adp@chr2:72381655..72381673, -
5.84e-89FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_24c369a337a8724f2abb4ab28adf7111p1@SLC6A5
5.84e-89FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_24c369a337a8724f2abb4ab28adf7111p1@SLC6A5
2.65e-84FFCP PHASE2:Hg19::chr11:122733138..122733178,+#_4aaba25060ed7b9a3b7db387d2348001p3@CRTAM
2.65e-84FFCP PHASE1:Hg19::chr11:122733138..122733178,+#_4aaba25060ed7b9a3b7db387d2348001p3@CRTAM
3.05e-84FFCP PHASE2:Hg19::chr9:135457981..135458003,+#_bba28ebae326f8ec936a56cfb2861b87p1@BARHL1
3.05e-84FFCP PHASE1:Hg19::chr9:135457981..135458003,+#_bba28ebae326f8ec936a56cfb2861b87p1@BARHL1
4.43e-82FFCP PHASE1:Hg19::chr6:152884391..152884402,-#_6cd4b6f06b14ee0b95aee38ba8a30cdfp@chr6:152884391..152884402, -
4.43e-82FFCP PHASE1:Hg19::chr4:117873850..117873861,-#_6cd4b6f06b14ee0b95aee38ba8a30cdfp@chr4:117873850..117873861, -
4.43e-82FFCP PHASE2:Hg19::chr6:152884391..152884402,-#_6cd4b6f06b14ee0b95aee38ba8a30cdfp@chr6:152884391..152884402, -
4.43e-82FFCP PHASE2:Hg19::chr4:117873850..117873861,-#_6cd4b6f06b14ee0b95aee38ba8a30cdfp@chr4:117873850..117873861, -
6.69e-74FFCP PHASE2:Hg19::chr6:152884406..152884453,-#_d22b7e0131e316901c386b5861a52cb0p@chr6:152884406..152884453, -
6.69e-74FFCP PHASE1:Hg19::chr6:152884406..152884453,-#_d22b7e0131e316901c386b5861a52cb0p@chr6:152884406..152884453, -
1.11e-73FFCP PHASE2:Hg19::chr13:100311142..100311153,+#_0a12d14dae02220abaa0dd807efa4c98p@chr13:100311142..100311153, +
1.11e-73FFCP PHASE1:Hg19::chr13:100311142..100311153,+#_0a12d14dae02220abaa0dd807efa4c98p@chr13:100311142..100311153, +
4.59e-73FFCP PHASE1:Hg19::chr10:130489605..130489614,-#_87b892b550f2c29366675eb6dbd240abp@chr10:130489605..130489614, -
4.59e-73FFCP PHASE2:Hg19::chr10:130489605..130489614,-#_87b892b550f2c29366675eb6dbd240abp@chr10:130489605..130489614, -
3.5e-70FFCP PHASE1:Hg19::chr9:73736442..73736451,-#_286729a93e475919d473258948e2367ap9@TRPM3
3.5e-70FFCP PHASE2:Hg19::chr9:73736442..73736451,-#_286729a93e475919d473258948e2367ap9@TRPM3
1.26e-68FFCP PHASE1:Hg19::chr11:43855489..43855503,-#_030c63c02ef096df639296aa17222785p1@ENST00000524643
1.26e-68FFCP PHASE1:Hg19::chr5:161112715..161112736,+#_030c63c02ef096df639296aa17222785p1@GABRA6
1.26e-68FFCP PHASE2:Hg19::chr11:43855489..43855503,-#_030c63c02ef096df639296aa17222785p1@ENST00000524643
1.26e-68FFCP PHASE2:Hg19::chr5:161112715..161112736,+#_030c63c02ef096df639296aa17222785p1@GABRA6
1.26e-68FFCP PHASE2:Hg19::chr3:147110022..147110050,-#_030c63c02ef096df639296aa17222785p8@ZIC4
1.26e-68FFCP PHASE1:Hg19::chr3:147110022..147110050,-#_030c63c02ef096df639296aa17222785p8@ZIC4
1.45e-68FFCP PHASE2:Hg19::chr6:72922590..72922605,+#_54a966cdb8d126e179117bc02a1661d1p5@RIMS1
1.45e-68FFCP PHASE1:Hg19::chr6:72922590..72922605,+#_54a966cdb8d126e179117bc02a1661d1p5@RIMS1
1.67e-68FFCP PHASE2:Hg19::chr11:27742115..27742119,-#_46bc872b8c69b83aa098ee995f6cda07p17@BDNF
1.67e-68FFCP PHASE1:Hg19::chr11:27742115..27742119,-#_46bc872b8c69b83aa098ee995f6cda07p17@BDNF
6.16e-67FFCP PHASE2:Hg19::chr19:29493486..29493497,+#_350d016ea3b5af23fa781af851140475p2@LOC100505835
6.16e-67FFCP PHASE1:Hg19::chr19:29493486..29493497,+#_350d016ea3b5af23fa781af851140475p2@LOC100505835
5.11e-66FFCP PHASE1:Hg19::chr5:161112968..161112988,+#_758f117b4fe5756c577d70faf0658ceap3@GABRA6
5.11e-66FFCP PHASE1:Hg19::chr3:98519943..98519958,-#_758f117b4fe5756c577d70faf0658ceap@chr3:98519943..98519958, -
5.11e-66FFCP PHASE1:Hg19::chr1:16366392..16366411,-#_758f117b4fe5756c577d70faf0658ceap@chr1:16366392..16366411, -
5.11e-66FFCP PHASE1:Hg19::chr14:60049016..60049032,-#_758f117b4fe5756c577d70faf0658ceap@chr14:60049016..60049032, -
5.11e-66FFCP PHASE2:Hg19::chr18:8783586..8783597,+#_758f117b4fe5756c577d70faf0658ceap2@CCDC165
5.11e-66FFCP PHASE2:Hg19::chr20:45061746..45061763,-#_758f117b4fe5756c577d70faf0658ceap4@ELMO2
5.11e-66FFCP PHASE1:Hg19::chr6:72922614..72922626,+#_758f117b4fe5756c577d70faf0658ceap19@RIMS1
5.11e-66FFCP PHASE2:Hg19::chr5:161112968..161112988,+#_758f117b4fe5756c577d70faf0658ceap3@GABRA6
5.11e-66FFCP PHASE2:Hg19::chr6:72922728..72922737,+#_758f117b4fe5756c577d70faf0658ceap29@RIMS1
5.11e-66FFCP PHASE2:Hg19::chr20:39790925..39790940,+#_758f117b4fe5756c577d70faf0658ceap@chr20:39790925..39790940, +
5.11e-66FFCP PHASE1:Hg19::chr17:50236110..50236119,-#_758f117b4fe5756c577d70faf0658ceap22@CA10
5.11e-66FFCP PHASE1:Hg19::chr17:588423..588441,-#_758f117b4fe5756c577d70faf0658ceap@chr17:588423..588441, -
5.11e-66FFCP PHASE1:Hg19::chr20:45061746..45061763,-#_758f117b4fe5756c577d70faf0658ceap4@ELMO2
5.11e-66FFCP PHASE2:Hg19::chr2:149835088..149835109,+#_758f117b4fe5756c577d70faf0658ceap9@KIF5C
5.11e-66FFCP PHASE1:Hg19::chr15:81489280..81489292,+#_758f117b4fe5756c577d70faf0658ceap15@IL16
5.11e-66FFCP PHASE1:Hg19::chr17:36720287..36720302,-#_758f117b4fe5756c577d70faf0658ceap18@SRCIN1
5.11e-66FFCP PHASE2:Hg19::chr14:77582905..77582916,+#_758f117b4fe5756c577d70faf0658ceap5@TMEM63C
5.11e-66FFCP PHASE2:Hg19::chr14:52168958..52169000,+#_758f117b4fe5756c577d70faf0658ceap27@FRMD6
5.11e-66FFCP PHASE2:Hg19::chr14:60049016..60049032,-#_758f117b4fe5756c577d70faf0658ceap@chr14:60049016..60049032, -
5.11e-66FFCP PHASE1:Hg19::chr11:122733033..122733052,+#_758f117b4fe5756c577d70faf0658ceap4@CRTAM
5.11e-66FFCP PHASE2:Hg19::chr5:161112654..161112669,+#_758f117b4fe5756c577d70faf0658ceap2@GABRA6
5.11e-66FFCP PHASE1:Hg19::chr5:161112654..161112669,+#_758f117b4fe5756c577d70faf0658ceap2@GABRA6
5.11e-66FFCP PHASE2:Hg19::chr1:16366392..16366411,-#_758f117b4fe5756c577d70faf0658ceap@chr1:16366392..16366411, -
5.11e-66FFCP PHASE1:Hg19::chr2:149835088..149835109,+#_758f117b4fe5756c577d70faf0658ceap9@KIF5C
5.11e-66FFCP PHASE2:Hg19::chr17:36720287..36720302,-#_758f117b4fe5756c577d70faf0658ceap18@SRCIN1
5.11e-66FFCP PHASE1:Hg19::chr20:39790925..39790940,+#_758f117b4fe5756c577d70faf0658ceap@chr20:39790925..39790940, +
5.11e-66FFCP PHASE2:Hg19::chr3:98519943..98519958,-#_758f117b4fe5756c577d70faf0658ceap@chr3:98519943..98519958, -
5.11e-66FFCP PHASE2:Hg19::chr9:135538143..135538152,-#_758f117b4fe5756c577d70faf0658ceap2@CU680380
5.11e-66FFCP PHASE1:Hg19::chr18:8783586..8783597,+#_758f117b4fe5756c577d70faf0658ceap2@CCDC165
5.11e-66FFCP PHASE1:Hg19::chr17:72857611..72857619,-#_758f117b4fe5756c577d70faf0658ceap@chr17:72857611..72857619, -
5.11e-66FFCP PHASE2:Hg19::chr6:127533959..127533972,-#_758f117b4fe5756c577d70faf0658ceap@chr6:127533959..127533972, -
5.11e-66FFCP PHASE2:Hg19::chr17:72857611..72857619,-#_758f117b4fe5756c577d70faf0658ceap@chr17:72857611..72857619, -
5.11e-66FFCP PHASE1:Hg19::chr3:147125238..147125275,+#_758f117b4fe5756c577d70faf0658ceap@chr3:147125238..147125275, +
5.11e-66FFCP PHASE1:Hg19::chr18:8783637..8783650,+#_758f117b4fe5756c577d70faf0658ceap@chr18:8783637..8783650, +
5.11e-66FFCP PHASE2:Hg19::chr11:122733033..122733052,+#_758f117b4fe5756c577d70faf0658ceap4@CRTAM
5.11e-66FFCP PHASE1:Hg19::chr14:77582905..77582916,+#_758f117b4fe5756c577d70faf0658ceap5@TMEM63C
5.11e-66FFCP PHASE1:Hg19::chr6:34073743..34073761,-#_758f117b4fe5756c577d70faf0658ceap1@GRM4
5.11e-66FFCP PHASE2:Hg19::chr17:72667462..72667471,+#_758f117b4fe5756c577d70faf0658ceap11@RAB37
5.11e-66FFCP PHASE1:Hg19::chr11:123448159..123448170,+#_758f117b4fe5756c577d70faf0658ceap4@AB384137
5.11e-66FFCP PHASE2:Hg19::chr11:123448159..123448170,+#_758f117b4fe5756c577d70faf0658ceap4@AB384137
5.11e-66FFCP PHASE2:Hg19::chr17:50236110..50236119,-#_758f117b4fe5756c577d70faf0658ceap22@CA10
5.11e-66FFCP PHASE2:Hg19::chr6:72922614..72922626,+#_758f117b4fe5756c577d70faf0658ceap19@RIMS1
5.11e-66FFCP PHASE1:Hg19::chr6:127533978..127533993,-#_758f117b4fe5756c577d70faf0658ceap@chr6:127533978..127533993, -
5.11e-66FFCP PHASE1:Hg19::chr6:72922728..72922737,+#_758f117b4fe5756c577d70faf0658ceap29@RIMS1
5.11e-66FFCP PHASE2:Hg19::chr3:147125238..147125275,+#_758f117b4fe5756c577d70faf0658ceap@chr3:147125238..147125275, +
5.11e-66FFCP PHASE1:Hg19::chr15:79724672..79724683,+#_758f117b4fe5756c577d70faf0658ceap1@KIAA1024
5.11e-66FFCP PHASE2:Hg19::chr17:588423..588441,-#_758f117b4fe5756c577d70faf0658ceap@chr17:588423..588441, -
5.11e-66FFCP PHASE2:Hg19::chr15:81489280..81489292,+#_758f117b4fe5756c577d70faf0658ceap15@IL16
5.11e-66FFCP PHASE1:Hg19::chr14:60031159..60031181,-#_758f117b4fe5756c577d70faf0658ceap1@ENST00000556936
5.11e-66FFCP PHASE2:Hg19::chr18:8783637..8783650,+#_758f117b4fe5756c577d70faf0658ceap@chr18:8783637..8783650, +
5.11e-66FFCP PHASE2:Hg19::chr6:127533978..127533993,-#_758f117b4fe5756c577d70faf0658ceap@chr6:127533978..127533993, -
5.11e-66FFCP PHASE2:Hg19::chr14:60031159..60031181,-#_758f117b4fe5756c577d70faf0658ceap1@ENST00000556936
5.11e-66FFCP PHASE2:Hg19::chr15:79724672..79724683,+#_758f117b4fe5756c577d70faf0658ceap1@KIAA1024
5.11e-66FFCP PHASE1:Hg19::chr6:127533959..127533972,-#_758f117b4fe5756c577d70faf0658ceap@chr6:127533959..127533972, -
5.11e-66FFCP PHASE1:Hg19::chr9:135538143..135538152,-#_758f117b4fe5756c577d70faf0658ceap2@CU680380
5.11e-66FFCP PHASE1:Hg19::chr14:52168958..52169000,+#_758f117b4fe5756c577d70faf0658ceap27@FRMD6
5.11e-66FFCP PHASE1:Hg19::chr17:72667462..72667471,+#_758f117b4fe5756c577d70faf0658ceap11@RAB37
5.11e-66FFCP PHASE2:Hg19::chr6:34073743..34073761,-#_758f117b4fe5756c577d70faf0658ceap1@GRM4
1.63e-65FFCP PHASE2:Hg19::chr10:62149532..62149539,-#_1709d994a1600306366719a08465f352p38@ANK3
1.63e-65FFCP PHASE1:Hg19::chr10:62149532..62149539,-#_1709d994a1600306366719a08465f352p38@ANK3
2.29e-65FFCP PHASE1:Hg19::chrX:106692537..106692551,+#_be059c021453df33822336f206e8e556p@chrX:106692537..106692551, +
2.29e-65FFCP PHASE2:Hg19::chrX:106692537..106692551,+#_be059c021453df33822336f206e8e556p@chrX:106692537..106692551, +
8.77e-62FFCP PHASE2:Hg19::chr7:153445213..153445251,+#_35a5c483d04241f61b3655c8954ac63bp@chr7:153445213..153445251, +
8.77e-62FFCP PHASE1:Hg19::chr7:153445213..153445251,+#_35a5c483d04241f61b3655c8954ac63bp@chr7:153445213..153445251, +
9.7e-62FFCP PHASE2:Hg19::chr9:8779377..8779397,-#_dfe42176c26ac9037d569bdc6e4fa1d8p@chr9:8779377..8779397, -
9.7e-62FFCP PHASE1:Hg19::chr9:8779377..8779397,-#_dfe42176c26ac9037d569bdc6e4fa1d8p@chr9:8779377..8779397, -
2.04e-59FFCP PHASE2:Hg19::chr12:72332618..72332632,+#_acc1f077724e5f617d1d0e8b7062a2d3p1@TPH2
2.04e-59FFCP PHASE1:Hg19::chr12:72332618..72332632,+#_acc1f077724e5f617d1d0e8b7062a2d3p1@TPH2

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