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{{UBERON
{{UBERON
|id=UBERON:0004458
|alt_id=
|name=body cavity or lining
|namespace=
|def=
|xref=MA:0000005
|is_a=UBERON:0001062
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=UBERON:0002323;;UBERON:0004457
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004458
|is_a=UBERON:0001062
|is_obsolete=
|located_in=
|located_in=
|name=body cavity or lining
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=UBERON:0002323;;UBERON:0004457
|xref=EMAPA:16060;;MA:0000005
}}
}}

Latest revision as of 17:46, 12 September 2014

Name:body cavity or lining
Namespace:FANTOM
Xrefs:
links:

EMAPA:16060

MA:0000005

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001062(anatomical entity)
union_of:UBERON:0002323(body cavity),UBERON:0004457(cavity lining)



Children

is a:UBERON:0002323 (body cavity),UBERON:0004457 (cavity lining)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004458 (body cavity or lining), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.62e-38FFCP PHASE2:Mm9::chr2:164481543..164481613,+#_800e202f48c9ecd5b04ce2d04ac7c5a9p1@Wfdc10
2.62e-38FFCP PHASE1:Mm9::chr2:164481543..164481613,+#_800e202f48c9ecd5b04ce2d04ac7c5a9p1@Wfdc10
6.02e-38FFCP PHASE2:Mm9::chr16:5227918..5227923,-#_456a34fc9dd0b7555133d7e667c9950dp@chr16:5227918..5227923, -
6.02e-38FFCP PHASE1:Mm9::chr16:5227918..5227923,-#_456a34fc9dd0b7555133d7e667c9950dp@chr16:5227918..5227923, -
2.43e-34FFCP PHASE2:Mm9::chr7:52741629..52741644,+#_500507e4f4162c441d6678ab0e156b6ap7@Tulp2
2.43e-34FFCP PHASE1:Mm9::chr7:52741629..52741644,+#_500507e4f4162c441d6678ab0e156b6ap7@Tulp2
1.77e-31FFCP PHASE1:Mm9::chrX:130516261..130516293,-#_8d204a4974c2fabf524917ca29c2b537p2@Sytl4
1.77e-31FFCP PHASE2:Mm9::chrX:130516261..130516293,-#_8d204a4974c2fabf524917ca29c2b537p2@Sytl4
3.73e-31FFCP PHASE1:Mm9::chr2:104966659..104966672,-#_96486aaff53a49fc3fe860cc972b982dp1@AI314831
3.73e-31FFCP PHASE2:Mm9::chr2:104966659..104966672,-#_96486aaff53a49fc3fe860cc972b982dp1@AI314831
7.49e-31FFCP PHASE2:Mm9::chr2:104966545..104966586,-#_c32e5a2e82e89095b17d89237f69277dp1@ENSMUST00000174870
7.49e-31FFCP PHASE1:Mm9::chr2:104966545..104966586,-#_c32e5a2e82e89095b17d89237f69277dp1@ENSMUST00000174870
1.28e-30FFCP PHASE1:Mm9::chr17:28644343..28644394,-#_f2a149b6de8fa51b263ac862bab99dcep3@Fkbp5
1.28e-30FFCP PHASE2:Mm9::chr17:28644343..28644394,-#_f2a149b6de8fa51b263ac862bab99dcep3@Fkbp5
7.15e-30FFCP PHASE2:Mm9::chr4:141375242..141375280,-#_5c243eba195a28e09cc86667134d6fbdp3@Cela2a
7.15e-30FFCP PHASE1:Mm9::chr12:31775417..31775434,-#_5c243eba195a28e09cc86667134d6fbdp@chr12:31775417..31775434, -
7.15e-30FFCP PHASE2:Mm9::chr12:31775417..31775434,-#_5c243eba195a28e09cc86667134d6fbdp@chr12:31775417..31775434, -
7.15e-30FFCP PHASE2:Mm9::chr5:26334211..26334241,+#_5c243eba195a28e09cc86667134d6fbdp@chr5:26334211..26334241, +
7.15e-30FFCP PHASE1:Mm9::chr4:141375242..141375280,-#_5c243eba195a28e09cc86667134d6fbdp3@Cela2a
7.15e-30FFCP PHASE1:Mm9::chr5:26334211..26334241,+#_5c243eba195a28e09cc86667134d6fbdp@chr5:26334211..26334241, +
9.19e-30FFCP PHASE2:Mm9::chr3:40512838..40512859,+#_471b1fbdffcb5ad8ab23fda9f5bf2781p2@Slc25a31
9.19e-30FFCP PHASE1:Mm9::chr3:40512838..40512859,+#_471b1fbdffcb5ad8ab23fda9f5bf2781p2@Slc25a31
1.02e-29FFCP PHASE1:Mm9::chr6:18059038..18059062,-#_9c31db8ec562d8cdc0f08c40be938c4bp1@Asz1
1.02e-29FFCP PHASE2:Mm9::chr6:18059038..18059062,-#_9c31db8ec562d8cdc0f08c40be938c4bp1@Asz1
3.94e-29FFCP PHASE1:Hg19::chr9:127269661..127269719,-#_6b2074a5f84ee865784b3b4a0b085739p1@NR5A1
3.94e-29FFCP PHASE2:Hg19::chr9:127269661..127269719,-#_6b2074a5f84ee865784b3b4a0b085739p1@NR5A1
6.6e-29FFCP PHASE2:Mm9::chr7:109015811..109015852,-#_d392d1d02aed07f6d29c696e0e4a1006p6@Folr1
6.6e-29FFCP PHASE1:Mm9::chr7:109015811..109015852,-#_d392d1d02aed07f6d29c696e0e4a1006p6@Folr1
8.26e-29FFCP PHASE1:Mm9::chr5:109484637..109484648,+#_d882019cf58798b7d914d379b7b0970ep@chr5:109484637..109484648, +
8.26e-29FFCP PHASE2:Mm9::chr5:109484637..109484648,+#_d882019cf58798b7d914d379b7b0970ep@chr5:109484637..109484648, +
2.59e-28FFCP PHASE2:Mm9::chr7:104599826..104599841,+#_1e3463647667ade03fa7c8c8fa378cc4p2@Kctd14
2.59e-28FFCP PHASE1:Mm9::chr7:104599826..104599841,+#_1e3463647667ade03fa7c8c8fa378cc4p2@Kctd14
3.27e-28FFCP PHASE1:Mm9::chr15:88813324..88813392,+#_85f95a0c344261ede941ae32c9034417p1@Mov10l1
3.27e-28FFCP PHASE2:Mm9::chr15:88813324..88813392,+#_85f95a0c344261ede941ae32c9034417p1@Mov10l1
4.11e-28FFCP PHASE1:Mm9::chr8:4248188..4248219,+#_4d52d7fbc73bbf35a842ee79cee16dffp2@Gm14378
4.11e-28FFCP PHASE2:Mm9::chr8:4248188..4248219,+#_4d52d7fbc73bbf35a842ee79cee16dffp2@Gm14378
5.98e-28FFCP PHASE1:Mm9::chr3:102740016..102740030,-#_f74a16fd4f3d37e777d8511dd1ab2b83p1@Sycp1
5.98e-28FFCP PHASE2:Mm9::chr3:102740016..102740030,-#_f74a16fd4f3d37e777d8511dd1ab2b83p1@Sycp1
6.21e-28FFCP PHASE1:Mm9::chr9:69950924..69950949,-#_3a744b607ab4b558cd5a165d22ecbf98p4@Fam81a
6.21e-28FFCP PHASE2:Mm9::chr9:69950924..69950949,-#_3a744b607ab4b558cd5a165d22ecbf98p4@Fam81a
7.94e-28FFCP PHASE1:Mm9::chr6:18059063..18059084,-#_53928bbcdcd90d1cd98eb07c907c7143p2@Asz1
7.94e-28FFCP PHASE2:Mm9::chr6:18059063..18059084,-#_53928bbcdcd90d1cd98eb07c907c7143p2@Asz1
1.17e-27FFCP PHASE2:Mm9::chr6:30494986..30494997,+#_adec65633198228f34fbeb1fa4d628fdp@chr6:30494986..30494997, +
1.17e-27FFCP PHASE2:Mm9::chr2:148660852..148660861,+#_adec65633198228f34fbeb1fa4d628fdp3@Cst9
1.17e-27FFCP PHASE1:Mm9::chr6:30494986..30494997,+#_adec65633198228f34fbeb1fa4d628fdp@chr6:30494986..30494997, +
1.17e-27FFCP PHASE1:Mm9::chr19:58804381..58804392,+#_adec65633198228f34fbeb1fa4d628fdp@chr19:58804381..58804392, +
1.17e-27FFCP PHASE1:Mm9::chr4:62295167..62295182,+#_adec65633198228f34fbeb1fa4d628fdp22@Rgs3
1.17e-27FFCP PHASE2:Mm9::chr19:58804381..58804392,+#_adec65633198228f34fbeb1fa4d628fdp@chr19:58804381..58804392, +
1.17e-27FFCP PHASE1:Mm9::chr2:148660852..148660861,+#_adec65633198228f34fbeb1fa4d628fdp3@Cst9
1.17e-27FFCP PHASE2:Mm9::chr4:62295167..62295182,+#_adec65633198228f34fbeb1fa4d628fdp22@Rgs3
1.19e-27FFCP PHASE2:Mm9::chr15:102277099..102277126,+#_73e0cf6115cb3e5713b6438f9600873ap@chr15:102277099..102277126, +
1.19e-27FFCP PHASE1:Mm9::chr15:102277099..102277126,+#_73e0cf6115cb3e5713b6438f9600873ap@chr15:102277099..102277126, +
1.25e-27FFCP PHASE2:Mm9::chr15:76701495..76701535,-#_46d11e7541c23acf8e84796cfd4cba74p3@Zfp251
1.25e-27FFCP PHASE1:Mm9::chr15:76701495..76701535,-#_46d11e7541c23acf8e84796cfd4cba74p3@Zfp251
1.28e-27FFCP PHASE1:Mm9::chr4:129300189..129300196,-#_e46021981ca26460a78205c0a9be8f8fp3@Ccdc28b
1.28e-27FFCP PHASE2:Mm9::chr4:129300189..129300196,-#_e46021981ca26460a78205c0a9be8f8fp3@Ccdc28b
1.4e-27FFCP PHASE2:Mm9::chr10:81037444..81037483,+#_b11a97d71b19f5ee81785f91e65b6060p5@Tle2
1.4e-27FFCP PHASE1:Mm9::chr10:81037444..81037483,+#_b11a97d71b19f5ee81785f91e65b6060p5@Tle2
1.78e-27FFCP PHASE2:Mm9::chr1:157079840..157079859,-#_bc0311ecc52189bd48b730bd65aa67c9p1@BC034090
1.78e-27FFCP PHASE1:Mm9::chr1:157079840..157079859,-#_bc0311ecc52189bd48b730bd65aa67c9p1@BC034090
1.78e-27FFCP PHASE1:Mm9::chr11:116355895..116355908,-#_bc0311ecc52189bd48b730bd65aa67c9p4@Prpsap1
1.78e-27FFCP PHASE2:Mm9::chr11:116355895..116355908,-#_bc0311ecc52189bd48b730bd65aa67c9p4@Prpsap1
6.09e-27FFCP PHASE2:Mm9::chr1:168168856..168168893,-#_185b77dc1ad690c44e63c1e988c08302p1@Mael
6.09e-27FFCP PHASE1:Mm9::chr1:168168856..168168893,-#_185b77dc1ad690c44e63c1e988c08302p1@Mael
6.1e-27FFCP PHASE2:Mm9::chr7:52741730..52741769,+#_33b2f62e7fd1d12d0c96a7d70f6d6b2ep2@Tulp2
6.1e-27FFCP PHASE1:Mm9::chr7:52741730..52741769,+#_33b2f62e7fd1d12d0c96a7d70f6d6b2ep2@Tulp2
7.41e-27FFCP PHASE2:Mm9::chr7:149469129..149469146,+#_33249d3926dd1fa8950ad50326691bacp@chr7:149469129..149469146, +
7.41e-27FFCP PHASE1:Mm9::chr7:149469129..149469146,+#_33249d3926dd1fa8950ad50326691bacp@chr7:149469129..149469146, +
7.41e-27FFCP PHASE2:Mm9::chr5:135825867..135825910,-#_33249d3926dd1fa8950ad50326691bacp1@Fkbp6
7.41e-27FFCP PHASE1:Mm9::chr5:135825867..135825910,-#_33249d3926dd1fa8950ad50326691bacp1@Fkbp6
8.1e-27FFCP PHASE1:Mm9::chr7:147143936..147143939,-#_33ed56433116ced2d9a49382b008e855p1@Mir202
8.1e-27FFCP PHASE2:Mm9::chr7:147143936..147143939,-#_33ed56433116ced2d9a49382b008e855p1@Mir202
1.95e-26FFCP PHASE2:Mm9::chr3:95363593..95363613,+#_e9071198b479b003e30f2428bd014bc7p1@Hormad1
1.95e-26FFCP PHASE1:Mm9::chr3:95363593..95363613,+#_e9071198b479b003e30f2428bd014bc7p1@Hormad1
2.04e-26FFCP PHASE1:Mm9::chr13:24026303..24026308,+#_885698381e1f5632f29a8db0313752e5p1@Hist1h2aa
2.04e-26FFCP PHASE2:Mm9::chr13:24026303..24026308,+#_885698381e1f5632f29a8db0313752e5p1@Hist1h2aa
2.56e-26FFCP PHASE1:Mm9::chr2:38570011..38570034,-#_a869804f8a17f90cb2a24df32277706dp1@Nr5a1
2.56e-26FFCP PHASE2:Mm9::chr2:38570011..38570034,-#_a869804f8a17f90cb2a24df32277706dp1@Nr5a1
3.54e-26FFCP PHASE1:Mm9::chr14:70829178..70829221,-#_d1b9eb9b4af44eab79652f04929cece0p1@Piwil2
3.54e-26FFCP PHASE2:Mm9::chr14:70829178..70829221,-#_d1b9eb9b4af44eab79652f04929cece0p1@Piwil2
4.11e-26FFCP PHASE2:Mm9::chr2:104966713..104966727,-#_539387f5e62a435a8b0c137e49b5fb9dp2@AI314831
4.11e-26FFCP PHASE1:Mm9::chr2:104966713..104966727,-#_539387f5e62a435a8b0c137e49b5fb9dp2@AI314831
4.25e-26FFCP PHASE2:Mm9::chr9:50369387..50369406,-#_160344e374da885dee4d27228e516f3fp1@Tex12
4.25e-26FFCP PHASE1:Mm9::chr9:50369387..50369406,-#_160344e374da885dee4d27228e516f3fp1@Tex12
4.45e-26FFCP PHASE2:Mm9::chr2:104966510..104966538,-#_cca5cb3661ddcc5f492f0e649f9513bfp2@ENSMUST00000174870
4.45e-26FFCP PHASE1:Mm9::chr2:104966510..104966538,-#_cca5cb3661ddcc5f492f0e649f9513bfp2@ENSMUST00000174870
5.35e-26FFCP PHASE1:Mm9::chr18:47081451..47081490,+#_3a55d8491df37e4a7e377ef11b498bf0p1@Gm949
5.35e-26FFCP PHASE2:Mm9::chr18:47081451..47081490,+#_3a55d8491df37e4a7e377ef11b498bf0p1@Gm949
9.55e-26FFCP PHASE1:Mm9::chr7:20074394..20074416,+#_962483042c278b4fff6c32673030685ap1@Exoc3l2
9.55e-26FFCP PHASE2:Mm9::chr7:20074394..20074416,+#_962483042c278b4fff6c32673030685ap1@Exoc3l2
1.06e-25FFCP PHASE1:Mm9::chr1:36739960..36739999,-#_01a15543b0c6bd3a22fd532ffe8cf484p1@Fam178b
1.06e-25FFCP PHASE2:Mm9::chr1:36739960..36739999,-#_01a15543b0c6bd3a22fd532ffe8cf484p1@Fam178b
1.3e-25FFCP PHASE2:Mm9::chr2:148615085..148615142,+#_fa25eb5f66bfaf66a6334aebc84b0274p1@Cst12
1.3e-25FFCP PHASE1:Mm9::chr2:148615085..148615142,+#_fa25eb5f66bfaf66a6334aebc84b0274p1@Cst12
1.55e-25FFCP PHASE1:Mm9::chr7:36322696..36322738,-#_246eb95299299f068fbd53b42038960fp1@Tdrd12
1.55e-25FFCP PHASE2:Mm9::chr7:36322696..36322738,-#_246eb95299299f068fbd53b42038960fp1@Tdrd12
1.63e-25FFCP PHASE2:Mm9::chrX:103416484..103416508,-#_05b68c03e18dd67d3aacd4be7ed23c3fp4@Taf9b
1.63e-25FFCP PHASE1:Mm9::chrX:103416484..103416508,-#_05b68c03e18dd67d3aacd4be7ed23c3fp4@Taf9b
1.85e-25FFCP PHASE2:Mm9::chr7:20074432..20074443,+#_19da76680c1f47909314c1368772a9b6p2@Exoc3l2
1.85e-25FFCP PHASE1:Mm9::chr13:64190487..64190500,-#_19da76680c1f47909314c1368772a9b6p3@Hsd17b3

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