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{{UBERON
{{UBERON
|id=UBERON:0004176
|alt_id=
|name=external reproductive organ
|namespace=
|def="The external genitalia are the outer sex organs, such as the penis or vulva in mammals" [GO:0035261]
|xref=FMA:45643;;SCTID:362207005
|is_a=UBERON:0003133
|synonym="external genitalia" EXACT [];;"external reproductive organ" EXACT [];;"external sex organ" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The external genitalia are the outer sex organs, such as the penis or vulva in mammals" [GO:0035261]
|subset=organ_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004176
|is_a=UBERON:0003133
|is_obsolete=
|located_in=
|located_in=
|name=external genitalia
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=organ_slim
|preceded_by=
|synonym="external genitalia" EXACT [];;"external reproductive organ" EXACT [];;"external sex organ" EXACT []
|union_of=
|xref=FMA:45643;;SCTID:362207005
}}
}}

Latest revision as of 17:44, 12 September 2014

Name:external genitalia
Namespace:FANTOM
Definition:"The external genitalia are the outer sex organs, such as the penis or vulva in mammals" [GO:0035261]
Xrefs:
links:

FMA:45643

SCTID:362207005
Synonyms: "external genitalia" EXACT []
"external reproductive organ" EXACT []
"external sex organ" EXACT []
Subset: organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003133(reproductive organ)



Children

is a:UBERON:0005056 (external female genitalia),UBERON:0009196 (indifferent external genitalia)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004176 (external genitalia), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.56e-61FFCP PHASE2:Mm9::chr4:62295167..62295182,+#_3f189f648fd04a1255607266d828f148p22@Rgs3
5.56e-61FFCP PHASE1:Mm9::chr4:62295167..62295182,+#_3f189f648fd04a1255607266d828f148p22@Rgs3
4.35e-59FFCP PHASE2:Mm9::chr7:52741629..52741644,+#_d3bb909a8fd6f3757b9a21961013710ep7@Tulp2
4.35e-59FFCP PHASE1:Mm9::chr7:52741629..52741644,+#_d3bb909a8fd6f3757b9a21961013710ep7@Tulp2
7.74e-59FFCP PHASE1:Mm9::chr2:148615085..148615142,+#_1433747a5230deb4584d04f0ac934697p1@Cst12
7.74e-59FFCP PHASE2:Mm9::chr2:148615085..148615142,+#_1433747a5230deb4584d04f0ac934697p1@Cst12
7.96e-58FFCP PHASE1:Mm9::chr7:109015811..109015852,-#_457e65ae6013d8436ab7412c1bc097f5p6@Folr1
7.96e-58FFCP PHASE2:Mm9::chr7:109015811..109015852,-#_457e65ae6013d8436ab7412c1bc097f5p6@Folr1
2.1e-57FFCP PHASE1:Mm9::chr3:40512838..40512859,+#_393f52444d9b16b7f9b9982b9547be59p2@Slc25a31
2.1e-57FFCP PHASE2:Mm9::chr3:40512838..40512859,+#_393f52444d9b16b7f9b9982b9547be59p2@Slc25a31
3.2e-57FFCP PHASE1:Mm9::chr6:18059038..18059062,-#_084f875101a8bba66d1aa7ca8b28682ep1@Asz1
3.2e-57FFCP PHASE2:Mm9::chr6:18059038..18059062,-#_084f875101a8bba66d1aa7ca8b28682ep1@Asz1
4.39e-57FFCP PHASE1:Mm9::chrX:103416484..103416508,-#_1f6bcd7c88f42b46859e5540087d841fp4@Taf9b
4.39e-57FFCP PHASE2:Mm9::chrX:103416484..103416508,-#_1f6bcd7c88f42b46859e5540087d841fp4@Taf9b
2.81e-56FFCP PHASE1:Mm9::chrX:71422591..71422607,+#_f1e542964a65afc2850d3247074a94a6p1@Tktl1
2.81e-56FFCP PHASE2:Mm9::chr12:31775417..31775434,-#_f1e542964a65afc2850d3247074a94a6p@chr12:31775417..31775434, -
2.81e-56FFCP PHASE2:Mm9::chrX:71422591..71422607,+#_f1e542964a65afc2850d3247074a94a6p1@Tktl1
2.81e-56FFCP PHASE1:Mm9::chr12:31775417..31775434,-#_f1e542964a65afc2850d3247074a94a6p@chr12:31775417..31775434, -
4.4e-56FFCP PHASE1:Mm9::chr5:26334211..26334241,+#_d52714dd30684f0cd3051ccfe412df76p@chr5:26334211..26334241, +
4.4e-56FFCP PHASE2:Mm9::chr5:26334211..26334241,+#_d52714dd30684f0cd3051ccfe412df76p@chr5:26334211..26334241, +
6.2e-56FFCP PHASE1:Mm9::chr11:69431224..69431241,-#_b50271db010eec2966b811a9d1623898p@chr11:69431224..69431241, -
6.2e-56FFCP PHASE1:Mm9::chr8:26314366..26314395,-#_b50271db010eec2966b811a9d1623898p@chr8:26314366..26314395, -
6.2e-56FFCP PHASE2:Mm9::chrX:93160409..93160432,-#_b50271db010eec2966b811a9d1623898p@chrX:93160409..93160432, -
6.2e-56FFCP PHASE1:Mm9::chr16:37843615..37843636,-#_b50271db010eec2966b811a9d1623898p@chr16:37843615..37843636, -
6.2e-56FFCP PHASE2:Mm9::chr11:69431224..69431241,-#_b50271db010eec2966b811a9d1623898p@chr11:69431224..69431241, -
6.2e-56FFCP PHASE2:Mm9::chr8:26314366..26314395,-#_b50271db010eec2966b811a9d1623898p@chr8:26314366..26314395, -
6.2e-56FFCP PHASE1:Mm9::chrX:93160409..93160432,-#_b50271db010eec2966b811a9d1623898p@chrX:93160409..93160432, -
6.2e-56FFCP PHASE1:Mm9::chr2:25702844..25702859,-#_b50271db010eec2966b811a9d1623898p1@Sohlh1
6.2e-56FFCP PHASE2:Mm9::chr2:25702844..25702859,-#_b50271db010eec2966b811a9d1623898p1@Sohlh1
6.2e-56FFCP PHASE2:Mm9::chr16:37843615..37843636,-#_b50271db010eec2966b811a9d1623898p@chr16:37843615..37843636, -
1.38e-55FFCP PHASE1:Mm9::chr15:88813324..88813392,+#_2623373b56466686fc4398aaef7b96c8p1@Mov10l1
1.38e-55FFCP PHASE2:Mm9::chr15:88813324..88813392,+#_2623373b56466686fc4398aaef7b96c8p1@Mov10l1
2.15e-55FFCP PHASE1:Hg19::chr8:38008450..38008459,-#_4efcca6486a32635f178d0138c8946d5p4@STAR
2.15e-55FFCP PHASE2:Hg19::chr8:38008450..38008459,-#_4efcca6486a32635f178d0138c8946d5p4@STAR
3.93e-55FFCP PHASE1:Mm9::chr3:102740016..102740030,-#_ed58aba3b1e7fff388ee9848787f40b4p1@Sycp1
3.93e-55FFCP PHASE2:Mm9::chr3:102740016..102740030,-#_ed58aba3b1e7fff388ee9848787f40b4p1@Sycp1
3.32e-54FFCP PHASE1:Mm9::chr1:168168856..168168893,-#_d27eb13a538bf2307c7870f2849b5049p1@Mael
3.32e-54FFCP PHASE2:Mm9::chr1:168168856..168168893,-#_d27eb13a538bf2307c7870f2849b5049p1@Mael
5.91e-54FFCP PHASE2:Mm9::chr15:3253521..3253569,-#_05d3cc177bf48635ab4b3c17673bd9b5p1@Ccdc152
5.91e-54FFCP PHASE1:Mm9::chr15:3253521..3253569,-#_05d3cc177bf48635ab4b3c17673bd9b5p1@Ccdc152
6.24e-54FFCP PHASE1:Hg19::chr1:44584485..44584512,+#_71c03aa3003941bf599dc8dc5bb51bf9p2@KLF17
6.24e-54FFCP PHASE2:Hg19::chr1:44584485..44584512,+#_71c03aa3003941bf599dc8dc5bb51bf9p2@KLF17
7.21e-54FFCP PHASE1:Mm9::chr6:18059063..18059084,-#_8ca7b6477b9514580fd7923bea2aa4d0p2@Asz1
7.21e-54FFCP PHASE2:Mm9::chr6:18059063..18059084,-#_8ca7b6477b9514580fd7923bea2aa4d0p2@Asz1
3.37e-53FFCP PHASE1:Mm9::chr5:135825867..135825910,-#_84717fb9456057d6e2356e1e41bdf001p1@Fkbp6
3.37e-53FFCP PHASE2:Mm9::chr5:135825867..135825910,-#_84717fb9456057d6e2356e1e41bdf001p1@Fkbp6
5.2e-53FFCP PHASE2:Mm9::chr13:24026079..24026094,-#_c685f4c6938efa2a0fb3b54a3d3abf3fp1@Hist1h2ba
5.2e-53FFCP PHASE1:Mm9::chr13:24026079..24026094,-#_c685f4c6938efa2a0fb3b54a3d3abf3fp1@Hist1h2ba
7.61e-53FFCP PHASE1:Mm9::chr7:149469129..149469146,+#_13cb386e1aad7a0251f7e36f323879e1p@chr7:149469129..149469146, +
7.61e-53FFCP PHASE2:Mm9::chr7:147143936..147143939,-#_13cb386e1aad7a0251f7e36f323879e1p1@Mir202
7.61e-53FFCP PHASE2:Mm9::chr7:149469129..149469146,+#_13cb386e1aad7a0251f7e36f323879e1p@chr7:149469129..149469146, +
7.61e-53FFCP PHASE1:Mm9::chr7:147143936..147143939,-#_13cb386e1aad7a0251f7e36f323879e1p1@Mir202
1.62e-52FFCP PHASE1:Mm9::chr15:102277099..102277126,+#_69818194ec1b56a15ef8d723d4fe8f0dp@chr15:102277099..102277126, +
1.62e-52FFCP PHASE2:Mm9::chr15:102277099..102277126,+#_69818194ec1b56a15ef8d723d4fe8f0dp@chr15:102277099..102277126, +
1.8e-52FFCP PHASE2:Mm9::chr12:105339370..105339379,+#_cbb69cb2c0d8d12699d55e5d0bb9f1a3p2@Serpina5
1.8e-52FFCP PHASE1:Mm9::chr12:105339370..105339379,+#_cbb69cb2c0d8d12699d55e5d0bb9f1a3p2@Serpina5
2.46e-52FFCP PHASE1:Mm9::chr13:24026303..24026308,+#_26d2727d44977b7dcb0adab0f9fca5a2p1@Hist1h2aa
2.46e-52FFCP PHASE2:Mm9::chr13:24026303..24026308,+#_26d2727d44977b7dcb0adab0f9fca5a2p1@Hist1h2aa
2.69e-52FFCP PHASE2:Mm9::chr3:95363593..95363613,+#_35b09368bad005fc2a58ae4ba5ddd42ep1@Hormad1
2.69e-52FFCP PHASE1:Mm9::chr3:95363593..95363613,+#_35b09368bad005fc2a58ae4ba5ddd42ep1@Hormad1
1.97e-51FFCP PHASE2:Mm9::chr19:25580226..25580261,+#_9be536ea4d17eba219d9585142f869ddp2@Dmrt1
1.97e-51FFCP PHASE1:Mm9::chr2:148660852..148660861,+#_9be536ea4d17eba219d9585142f869ddp3@Cst9
1.97e-51FFCP PHASE1:Mm9::chr19:25580226..25580261,+#_9be536ea4d17eba219d9585142f869ddp2@Dmrt1
1.97e-51FFCP PHASE1:Mm9::chr8:26314291..26314315,-#_9be536ea4d17eba219d9585142f869ddp@chr8:26314291..26314315, -
1.97e-51FFCP PHASE2:Mm9::chr2:148660852..148660861,+#_9be536ea4d17eba219d9585142f869ddp3@Cst9
1.97e-51FFCP PHASE2:Mm9::chr8:26314291..26314315,-#_9be536ea4d17eba219d9585142f869ddp@chr8:26314291..26314315, -
2.47e-51FFCP PHASE2:Mm9::chrX:131499234..131499265,-#_7fe192fad5573daf7f1e68430119a935p1@Nxf2
2.47e-51FFCP PHASE1:Mm9::chrX:131499234..131499265,-#_7fe192fad5573daf7f1e68430119a935p1@Nxf2
4.3e-51FFCP PHASE2:Mm9::chr9:50369410..50369421,-#_414ff31ee7ae2aea5ec841f2ff39baedp2@Tex12
4.3e-51FFCP PHASE1:Mm9::chr9:50369410..50369421,-#_414ff31ee7ae2aea5ec841f2ff39baedp2@Tex12
5.44e-51FFCP PHASE2:Mm9::chr14:70829178..70829221,-#_bb6f3a8b07972be91f5de53362019306p1@Piwil2
5.44e-51FFCP PHASE1:Mm9::chr14:70829178..70829221,-#_bb6f3a8b07972be91f5de53362019306p1@Piwil2
6.54e-51FFCP PHASE2:Mm9::chr6:83138985..83138996,+#_0660d2485b0c07fcdffcfd529b577216p10@Dctn1
6.54e-51FFCP PHASE2:Mm9::chr19:25580353..25580364,+#_0660d2485b0c07fcdffcfd529b577216p4@Dmrt1
6.54e-51FFCP PHASE1:Mm9::chr11:69431091..69431096,-#_0660d2485b0c07fcdffcfd529b577216p@chr11:69431091..69431096, -
6.54e-51FFCP PHASE2:Mm9::chr17:89600024..89600037,-#_0660d2485b0c07fcdffcfd529b577216p2@Fshr
6.54e-51FFCP PHASE2:Mm9::chr11:69431091..69431096,-#_0660d2485b0c07fcdffcfd529b577216p@chr11:69431091..69431096, -
6.54e-51FFCP PHASE1:Mm9::chr10:127031444..127031494,-#_0660d2485b0c07fcdffcfd529b577216p@chr10:127031444..127031494, -
6.54e-51FFCP PHASE1:Mm9::chr6:83138985..83138996,+#_0660d2485b0c07fcdffcfd529b577216p10@Dctn1
6.54e-51FFCP PHASE1:Mm9::chr19:25580353..25580364,+#_0660d2485b0c07fcdffcfd529b577216p4@Dmrt1
6.54e-51FFCP PHASE1:Mm9::chr17:89600024..89600037,-#_0660d2485b0c07fcdffcfd529b577216p2@Fshr
6.54e-51FFCP PHASE2:Mm9::chr11:69431571..69431587,-#_0660d2485b0c07fcdffcfd529b577216p3@Shbg
6.54e-51FFCP PHASE1:Mm9::chr2:31332380..31332388,+#_0660d2485b0c07fcdffcfd529b577216p@chr2:31332380..31332388, +
6.54e-51FFCP PHASE2:Mm9::chr2:31332380..31332388,+#_0660d2485b0c07fcdffcfd529b577216p@chr2:31332380..31332388, +
6.54e-51FFCP PHASE1:Mm9::chr11:69431571..69431587,-#_0660d2485b0c07fcdffcfd529b577216p3@Shbg
6.54e-51FFCP PHASE2:Mm9::chr10:127031444..127031494,-#_0660d2485b0c07fcdffcfd529b577216p@chr10:127031444..127031494, -
7.2e-51FFCP PHASE1:Mm9::chr9:50369387..50369406,-#_669311c62b98cf30656052868a726de2p1@Tex12
7.2e-51FFCP PHASE2:Mm9::chr9:50369387..50369406,-#_669311c62b98cf30656052868a726de2p1@Tex12
1.26e-50FFCP PHASE1:Mm9::chr18:47081451..47081490,+#_d7b206cae8ddcca96c9fd30ed84bc165p1@Gm949
1.26e-50FFCP PHASE2:Mm9::chr18:47081451..47081490,+#_d7b206cae8ddcca96c9fd30ed84bc165p1@Gm949
1.62e-50FFCP PHASE1:Mm9::chr17:50432917..50432931,-#_baceef909da39074d71e58a5a2c93427p1@Dazl
1.62e-50FFCP PHASE2:Mm9::chr17:50432917..50432931,-#_baceef909da39074d71e58a5a2c93427p1@Dazl
3.51e-50FFCP PHASE1:Mm9::chr15:89240661..89240702,-#_09294e75db059c45c7c333c825763872p1@Syce3
3.51e-50FFCP PHASE2:Mm9::chr15:89240661..89240702,-#_09294e75db059c45c7c333c825763872p1@Syce3
3.85e-50FFCP PHASE1:Mm9::chr1:36739960..36739999,-#_49d9aea7ed8ef392fcb38d31bcfee366p1@Fam178b
3.85e-50FFCP PHASE2:Mm9::chr1:36739960..36739999,-#_49d9aea7ed8ef392fcb38d31bcfee366p1@Fam178b
3.59e-49FFCP PHASE1:Mm9::chr7:20074394..20074416,+#_ac67f49b0d7f94028d1dbd357b75a45ep1@Exoc3l2
3.59e-49FFCP PHASE2:Mm9::chr7:20074394..20074416,+#_ac67f49b0d7f94028d1dbd357b75a45ep1@Exoc3l2
5.42e-49FFCP PHASE2:Mm9::chr7:52741649..52741686,+#_4009ec3c076c64a787db9cb59c21937dp3@Tulp2
5.42e-49FFCP PHASE1:Mm9::chr7:52741649..52741686,+#_4009ec3c076c64a787db9cb59c21937dp3@Tulp2

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