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{{UBERON
{{UBERON
|id=UBERON:0001473
|alt_id=UBERON:FMA_30315-FMA_5034-MA_0000138-MA_0000139-MIAA_0000197-XAO_0000375-ZFA_0005105
|name=lymphatic vessel
|namespace=
|def="A vessel that contains or conveys lymph, that originates as an interfibrillar or intercellular cleft or space in a tissue or organ, and that if small has no distinct walls or walls composed only of endothelial cells and if large resembles a vein in structure[BTO]." [BTO:0000752, Wikipedia:Lymphatic_vessel]
|xref=AAO:0011005;;BTO:0000752;;EFO:0000873;;FMA:30315;;http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Illu_lymph_capillary.jpg/200px-Illu_lymph_capillary.jpg;;MA:0000138;;MAT:0000443;;ncithesaurus:Lymphatic_Vessel;;OpenCyc:Mx4rwA1fYZwpEbGdrcN5Y29ycA;;SCTID:279089004;;TAO:0005105;;VHOG:0001249;;XAO:0000375
|is_a=UBERON:0000055
|synonym="lymph vessel" EXACT []
|comment=
|comment=
|alt_id=UBERON:FMA_30315-FMA_5034-MA_0000138-MA_0000139-MIAA_0000197-XAO_0000375-ZFA_0005105
|disjoint_from=UBERON:0001981
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A vessel that contains or conveys lymph, that originates as an interfibrillar or intercellular cleft or space in a tissue or organ, and that if small has no distinct walls or walls composed only of endothelial cells and if large resembles a vein in structure[BTO]." [BTO:0000752, Wikipedia:Lymphatic_vessel]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=UBERON:0001981
|has_quality=
|has_quality=
|id=UBERON:0001473
|is_a=UBERON:0000055
|is_obsolete=
|located_in=
|located_in=
|name=lymphatic vessel
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004536;;UBERON:0006558
|part_of=UBERON:0004536;;UBERON:0006558
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep.[TAO]" xsd:string;;UBPROP:0000001 "A vessel that contains or conveys lymph.[AAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="lymph vessel" EXACT [];;"vas lymphaticum" RELATED LATIN [Wikipedia:Lymphatic_vessel]
|union_of=
|xref=AAO:0011005;;BTO:0000752;;EFO:0000873;;FMA:30315;;http://upload.wikimedia.org/wikipedia/commons/4/44/Illu_lymph_capillary.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Illu_lymph_capillary.jpg/200px-Illu_lymph_capillary.jpg;;MA:0000138;;MAT:0000443;;ncithesaurus:Lymphatic_Vessel;;OpenCyc:Mx4rwA1fYZwpEbGdrcN5Y29ycA;;SCTID:279089004;;TAO:0005105;;VHOG:0001249;;XAO:0000375
}}
}}

Latest revision as of 17:18, 12 September 2014

Name:lymphatic vessel
Namespace:FANTOM
Definition:"A vessel that contains or conveys lymph, that originates as an interfibrillar or intercellular cleft or space in a tissue or organ, and that if small has no distinct walls or walls composed only of endothelial cells and if large resembles a vein in structure[BTO]." [BTO:0000752, Wikipedia:Lymphatic_vessel]
Xrefs:
links:

AAO:0011005
BTO:0000752
EFO:0000873
FMA:30315
[1]
[2]
MA:0000138
MAT:0000443
ncithesaurus:Lymphatic_Vessel
OpenCyc:Mx4rwA1fYZwpEbGdrcN5Y29ycA
SCTID:279089004
TAO:0005105
VHOG:0001249

XAO:0000375
Synonyms: "lymph vessel" EXACT []
"vas lymphaticum" RELATED LATIN [Wikipedia:Lymphatic_vessel]
Alt_id: UBERON:FMA_30315-FMA_5034-MA_0000138-MA_0000139-MIAA_0000197-XAO_0000375-ZFA_0005105
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000055(vessel)
disjoint_from:UBERON:0001981(blood vessel)
part_of:UBERON:0004536(lymph vasculature),UBERON:0006558(lymphatic part of lymphoid system)



Children

part of:CL:0002138 (endothelial cell of lymphatic vessel),CL:0002554 (fibroblast of lymphatic vessel)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001473 (lymphatic vessel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.05e-102FFCP PHASE1:Hg19::chr9:13432964..13432971,-#_b0da3c5270919cc8b8b5c331ce4489dbp@chr9:13432964..13432971, -
5.05e-102FFCP PHASE2:Hg19::chr9:13432964..13432971,-#_b0da3c5270919cc8b8b5c331ce4489dbp@chr9:13432964..13432971, -
4.74e-79FFCP PHASE1:Hg19::chr1:65344872..65344880,-#_9b123895fc8a30fecdac24ff4c045c65p15@JAK1
4.74e-79FFCP PHASE2:Hg19::chr1:65344872..65344880,-#_9b123895fc8a30fecdac24ff4c045c65p15@JAK1
1.08e-76FFCP PHASE1:Hg19::chr3:30560368..30560379,+#_a40f37cebdcf9c01c13767036ad3fcfdp@chr3:30560368..30560379, +
1.08e-76FFCP PHASE2:Hg19::chr3:30560368..30560379,+#_a40f37cebdcf9c01c13767036ad3fcfdp@chr3:30560368..30560379, +
6.73e-74FFCP PHASE2:Hg19::chr17:28534912..28534942,-#_216540668d2afd258bb99051e0f2339cp@chr17:28534912..28534942, -
6.73e-74FFCP PHASE1:Hg19::chr17:28534912..28534942,-#_216540668d2afd258bb99051e0f2339cp@chr17:28534912..28534942, -
2.1e-68FFCP PHASE1:Hg19::chr2:56149881..56149899,-#_48933b1a96f108782f7e2725dc832fa6p14@EFEMP1
2.1e-68FFCP PHASE2:Hg19::chr2:56149881..56149899,-#_48933b1a96f108782f7e2725dc832fa6p14@EFEMP1
1.18e-65FFCP PHASE1:Hg19::chr19:48613876..48613886,-#_5e935c619f8913021070ac5d34795f20p7@PLA2G4C
1.18e-65FFCP PHASE2:Hg19::chr19:48613876..48613886,-#_5e935c619f8913021070ac5d34795f20p7@PLA2G4C
3.64e-64FFCP PHASE1:Hg19::chr6:74848034..74848043,+#_1a1897af2f4a990b66de8db131b805afp@chr6:74848034..74848043, +
3.64e-64FFCP PHASE2:Hg19::chr6:74848034..74848043,+#_1a1897af2f4a990b66de8db131b805afp@chr6:74848034..74848043, +
6.87e-57FFCP PHASE1:Hg19::chr6:5054373..5054392,-#_ab4700e5d238d17fa5a754d35ce3c8fcp1@AK126470
6.87e-57FFCP PHASE2:Hg19::chr6:5054373..5054392,-#_ab4700e5d238d17fa5a754d35ce3c8fcp1@AK126470
9.15e-57FFCP PHASE1:Hg19::chr7:79998842..79998855,+#_e39ee3e40e109e59d96379e0f623be65p25@CD36
9.15e-57FFCP PHASE2:Hg19::chr7:79998842..79998855,+#_e39ee3e40e109e59d96379e0f623be65p25@CD36
1.06e-56FFCP PHASE1:Hg19::chr3:145968441..145968451,-#_e05761710d59728963da5680ab144a24p17@PLSCR4
1.06e-56FFCP PHASE2:Hg19::chr3:145968441..145968451,-#_e05761710d59728963da5680ab144a24p17@PLSCR4
1.22e-56FFCP PHASE1:Hg19::chr2:33661536..33661549,+#_f6b9637c5137fe327094b1c395153d50p17@RASGRP3
1.22e-56FFCP PHASE2:Hg19::chr2:33661536..33661549,+#_f6b9637c5137fe327094b1c395153d50p17@RASGRP3
1.41e-56FFCP PHASE1:Hg19::chr9:13446440..13446456,+#_7d9d0f04c71fafb5dd2316e337ef8861p2@ENST00000428006
1.41e-56FFCP PHASE2:Hg19::chr9:13446440..13446456,+#_7d9d0f04c71fafb5dd2316e337ef8861p2@ENST00000428006
4.57e-56FFCP PHASE2:Hg19::chr17:28534879..28534889,-#_7c69fa12c8098d7ce18a39f392837f26p@chr17:28534879..28534889, -
4.57e-56FFCP PHASE2:Hg19::chr12:46807404..46807413,+#_7c69fa12c8098d7ce18a39f392837f26p@chr12:46807404..46807413, +
4.57e-56FFCP PHASE1:Hg19::chr17:28534879..28534889,-#_7c69fa12c8098d7ce18a39f392837f26p@chr17:28534879..28534889, -
4.57e-56FFCP PHASE1:Hg19::chr12:46807404..46807413,+#_7c69fa12c8098d7ce18a39f392837f26p@chr12:46807404..46807413, +
6.66e-56FFCP PHASE1:Hg19::chr7:79998905..79998917,+#_44aaebbcaa8f1ff95cde992ad9861126p26@CD36
6.66e-56FFCP PHASE2:Hg19::chr7:79998905..79998917,+#_44aaebbcaa8f1ff95cde992ad9861126p26@CD36
2.32e-54FFCP PHASE1:Hg19::chr8:30300216..30300245,+#_4915e22e0732ec2620e99cdacbf6f9b6p10@RBPMS
2.32e-54FFCP PHASE2:Hg19::chr8:30300216..30300245,+#_4915e22e0732ec2620e99cdacbf6f9b6p10@RBPMS
3.99e-50FFCP PHASE2:Hg19::chr1:66723029..66723041,+#_33d233b9adeb6b47b025f5c3e10358f3p54@PDE4B
3.99e-50FFCP PHASE1:Hg19::chr2:33661526..33661535,+#_33d233b9adeb6b47b025f5c3e10358f3p23@RASGRP3
3.99e-50FFCP PHASE2:Hg19::chr2:33661526..33661535,+#_33d233b9adeb6b47b025f5c3e10358f3p23@RASGRP3
3.99e-50FFCP PHASE1:Hg19::chr11:108794429..108794441,+#_33d233b9adeb6b47b025f5c3e10358f3p@chr11:108794429..108794441, +
3.99e-50FFCP PHASE2:Hg19::chr11:108794408..108794422,+#_33d233b9adeb6b47b025f5c3e10358f3p@chr11:108794408..108794422, +
3.99e-50FFCP PHASE2:Hg19::chr11:108794429..108794441,+#_33d233b9adeb6b47b025f5c3e10358f3p@chr11:108794429..108794441, +
3.99e-50FFCP PHASE1:Hg19::chr17:75873825..75873826,+#_33d233b9adeb6b47b025f5c3e10358f3p@chr17:75873825..75873826, +
3.99e-50FFCP PHASE2:Hg19::chr17:75873825..75873826,+#_33d233b9adeb6b47b025f5c3e10358f3p@chr17:75873825..75873826, +
3.99e-50FFCP PHASE2:Hg19::chr4:114238344..114238353,+#_33d233b9adeb6b47b025f5c3e10358f3p58@ANK2
3.99e-50FFCP PHASE1:Hg19::chr11:108794408..108794422,+#_33d233b9adeb6b47b025f5c3e10358f3p@chr11:108794408..108794422, +
3.99e-50FFCP PHASE1:Hg19::chr4:114238344..114238353,+#_33d233b9adeb6b47b025f5c3e10358f3p58@ANK2
3.99e-50FFCP PHASE1:Hg19::chr1:66723029..66723041,+#_33d233b9adeb6b47b025f5c3e10358f3p54@PDE4B
9.58e-48FFCP PHASE1:Hg19::chr4:189881560..189881604,-#_0c3fbfaddf62fad60cda61850c35951ep@chr4:189881560..189881604, -
9.58e-48FFCP PHASE2:Hg19::chr4:189881560..189881604,-#_0c3fbfaddf62fad60cda61850c35951ep@chr4:189881560..189881604, -
1.55e-47FFCP PHASE1:Hg19::chr4:90857427..90857438,+#_6b5e3bac26c72cd9a2d1ad57cb8f76a5p@chr4:90857427..90857438, +
1.55e-47FFCP PHASE2:Hg19::chr4:90857427..90857438,+#_6b5e3bac26c72cd9a2d1ad57cb8f76a5p@chr4:90857427..90857438, +
1.71e-47FFCP PHASE1:Hg19::chr10:4823152..4823165,-#_a94d66a755313bbf6a71a06e9e704399p@chr10:4823152..4823165, -
1.71e-47FFCP PHASE2:Hg19::chr10:4823152..4823165,-#_a94d66a755313bbf6a71a06e9e704399p@chr10:4823152..4823165, -
3.05e-47FFCP PHASE1:Hg19::chr6:49534004..49534016,+#_66f1475ca6e56ca9a3a0d8a0f8ab9b83p@chr6:49534004..49534016, +
3.05e-47FFCP PHASE2:Hg19::chr6:49534004..49534016,+#_66f1475ca6e56ca9a3a0d8a0f8ab9b83p@chr6:49534004..49534016, +
7.08e-47FFCP PHASE1:Hg19::chr12:96841308..96841312,+#_774c9ec08928917759aa000d38205f22p@chr12:96841308..96841312, +
7.08e-47FFCP PHASE2:Hg19::chr12:96841308..96841312,+#_774c9ec08928917759aa000d38205f22p@chr12:96841308..96841312, +
3.73e-45FFCP PHASE1:Hg19::chr1:43917566..43917577,-#_a24165d82f288bd195b0197e407e366cp6@HYI
3.73e-45FFCP PHASE2:Hg19::chr1:43917566..43917577,-#_a24165d82f288bd195b0197e407e366cp6@HYI
4.34e-45FFCP PHASE1:Hg19::chr3:34262215..34262222,+#_e8de854ebce651115028ee18b4731f10p@chr3:34262215..34262222, +
4.34e-45FFCP PHASE2:Hg19::chr3:34262215..34262222,+#_e8de854ebce651115028ee18b4731f10p@chr3:34262215..34262222, +
5.04e-45FFCP PHASE1:Hg19::chr18:54339814..54339822,+#_82c5782696cccd3d99c342072db59cd2p7@WDR7
5.04e-45FFCP PHASE2:Hg19::chr18:54339814..54339822,+#_82c5782696cccd3d99c342072db59cd2p7@WDR7
6.81e-45FFCP PHASE1:Hg19::chr7:10196589..10196595,-#_ff87b515eec7b4a61826733d07347632p@chr7:10196589..10196595, -
6.81e-45FFCP PHASE2:Hg19::chr7:10196589..10196595,-#_ff87b515eec7b4a61826733d07347632p@chr7:10196589..10196595, -
7.92e-45FFCP PHASE1:Hg19::chr2:62705562..62705579,+#_3f5968e6dfa5f3fa3bd13787feb6f9c6p@chr2:62705562..62705579, +
7.92e-45FFCP PHASE2:Hg19::chr2:62705562..62705579,+#_3f5968e6dfa5f3fa3bd13787feb6f9c6p@chr2:62705562..62705579, +
3.69e-44FFCP PHASE1:Hg19::chr4:90856951..90856962,+#_657e7ea1f19ccb6ffec237be719bbfd7p@chr4:90856951..90856962, +
3.69e-44FFCP PHASE2:Hg19::chr4:90856951..90856962,+#_657e7ea1f19ccb6ffec237be719bbfd7p@chr4:90856951..90856962, +
3.69e-44FFCP PHASE1:Hg19::chr12:71031281..71031292,-#_657e7ea1f19ccb6ffec237be719bbfd7p12@PTPRB
3.69e-44FFCP PHASE2:Hg19::chr12:71031281..71031292,-#_657e7ea1f19ccb6ffec237be719bbfd7p12@PTPRB
3.18e-40FFCP PHASE2:Hg19::chr12:105882068..105882076,+#_3063c1b80fb4aa409af5e85c8041be42p@chr12:105882068..105882076, +
3.18e-40FFCP PHASE1:Hg19::chr12:105882068..105882076,+#_3063c1b80fb4aa409af5e85c8041be42p@chr12:105882068..105882076, +
3.89e-40FFCP PHASE1:Hg19::chr8:6459787..6459796,+#_9683dbb41cd8cf47d452080885c2c770p@chr8:6459787..6459796, +
3.89e-40FFCP PHASE2:Hg19::chr8:6459787..6459796,+#_9683dbb41cd8cf47d452080885c2c770p@chr8:6459787..6459796, +
1.55e-39FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_3f0d94d5c4d805ddc01ad542d7065484p@chr4:38057595..38057624, -
1.55e-39FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_3f0d94d5c4d805ddc01ad542d7065484p@chr4:38057595..38057624, -
6.2e-39FFCP PHASE1:Hg19::chr3:194868639..194868654,+#_cc242f9a7f86bcbcd50776105ab9c9a0p1@ENST00000426468
6.2e-39FFCP PHASE2:Hg19::chr3:194868639..194868654,+#_cc242f9a7f86bcbcd50776105ab9c9a0p1@ENST00000426468
9.18e-38FFCP PHASE2:Hg19::chr8:16425014..16425019,-#_0b8be2d80cf587dedd73f8b0b05ee2b6p13@MSR1
9.18e-38FFCP PHASE1:Hg19::chr8:16425014..16425019,-#_0b8be2d80cf587dedd73f8b0b05ee2b6p13@MSR1
1.51e-37FFCP PHASE2:Hg19::chr6:168195978..168195989,+#_acd3898d41f591d5f16ba6799d983294p3@LOC441179
1.51e-37FFCP PHASE1:Hg19::chr6:168195978..168195989,+#_acd3898d41f591d5f16ba6799d983294p3@LOC441179
1.95e-37FFCP PHASE1:Hg19::chr2:27487913..27487933,-#_0644ba878c78a983eb041597f377a062p@chr2:27487913..27487933, -
1.95e-37FFCP PHASE2:Hg19::chr2:27487913..27487933,-#_0644ba878c78a983eb041597f377a062p@chr2:27487913..27487933, -
5.85e-37FFCP PHASE1:Hg19::chr8:6420777..6420779,-#_4bd52bb53b90b4d6c22589a9d11cb3b2p5@ANGPT2
5.85e-37FFCP PHASE2:Hg19::chr8:6420777..6420779,-#_4bd52bb53b90b4d6c22589a9d11cb3b2p5@ANGPT2
1.23e-36FFCP PHASE1:Hg19::chr6:168195926..168195943,+#_7c45e301ab0db7c4142d54663367033ep1@LOC441179
1.23e-36FFCP PHASE2:Hg19::chr6:168195926..168195943,+#_7c45e301ab0db7c4142d54663367033ep1@LOC441179
1.33e-36FFCP PHASE1:Hg19::chr10:94590895..94590905,+#_9e60badab6ac6a881883c81177258b15p8@EXOC6
1.33e-36FFCP PHASE2:Hg19::chr10:94590895..94590905,+#_9e60badab6ac6a881883c81177258b15p8@EXOC6
5.59e-36FFCP PHASE1:Hg19::chr8:16425043..16425061,-#_a9cd0ab17c61ae3b6c7ef311b3be3d4bp5@MSR1
5.59e-36FFCP PHASE2:Hg19::chr8:16425043..16425061,-#_a9cd0ab17c61ae3b6c7ef311b3be3d4bp5@MSR1
1.86e-34FFCP PHASE1:Hg19::chr17:79426425..79426444,+#_2bc8d45d843feca748efa0983defc651p@chr17:79426425..79426444, +
1.86e-34FFCP PHASE2:Hg19::chr17:79426425..79426444,+#_2bc8d45d843feca748efa0983defc651p@chr17:79426425..79426444, +
3.14e-34FFCP PHASE1:Hg19::chr11:57543275..57543296,+#_82d34aebe64357d2db2e9f514b82b917p@chr11:57543275..57543296, +
3.14e-34FFCP PHASE2:Hg19::chr11:57543275..57543296,+#_82d34aebe64357d2db2e9f514b82b917p@chr11:57543275..57543296, +
2.31e-33FFCP PHASE1:Hg19::chr19:45226133..45226157,-#_c8be5d8d4d25c6612d9beb34cb851c46p@chr19:45226133..45226157, -
2.31e-33FFCP PHASE2:Hg19::chr19:45226133..45226157,-#_c8be5d8d4d25c6612d9beb34cb851c46p@chr19:45226133..45226157, -
2.61e-33FFCP PHASE1:Hg19::chr3:159570877..159570888,+#_f3d251d62a727e9d8b0b663f947f3359p43@SCHIP1
2.61e-33FFCP PHASE2:Hg19::chr3:159570877..159570888,+#_f3d251d62a727e9d8b0b663f947f3359p43@SCHIP1
7.63e-33FFCP PHASE1:Hg19::chr12:71031220..71031229,-#_8f9bd7ae89bd7f18c4f4dd56cfa6b188p10@PTPRB
7.63e-33FFCP PHASE2:Hg19::chr12:71031220..71031229,-#_8f9bd7ae89bd7f18c4f4dd56cfa6b188p10@PTPRB










Property "Property value" (as page type) with input value "UBPROP:0000001 "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "A vessel that contains or conveys lymph.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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