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{{UBERON
{{UBERON
|id=UBERON:0001015
|alt_id=
|name=musculature
|anatomical_img_id=FMA:30316
|namespace=
|comment=AO notes: In FMA this is classified as a set of organs. ZFA musculature system has subtypes, so it is classified here. WBbt muscular system has subtypes so it goes here. Note that we use the MA term set of skeletal muscles here as it seems most appropriate (*not* MA:musculature). AAO is generally confused here.
|def="Anatomical system that allows the animal move, includes all muscles[WP]." [BTO:0000887, Wikipedia:Muscular_system, ZFIN:curator]
|xref=AAO:0011066;;BTO:0000887;;EFO:0001949;;FMA:32558;;MA:0000165;;ncithesaurus:Muscle;;OpenCyc:Mx4rvVjmr5wpEbGdrcN5Y29ycA;;TAO:0000548;;WBbt:0005737;;ZFA:0000548
|is_a=UBERON:0000480;;UBERON:0004120
|synonym="muscle group" EXACT [];;"muscle system" RELATED [];;"muscles" RELATED [];;"muscles set" EXACT [];;"musculature" EXACT [];;"musculature system" RELATED [];;"musculi" EXACT [FMA:32558, FMA:TA];;"set of muscles" EXACT [FMA:32558];;"set of organs" EXACT [];;"set of skeletal muscles" EXACT [MA:0000165]
|comment=In FMA this is classified as a set of organs. ZFA musculature system has subtypes, so it is classified here. WBbt muscular system has subtypes so it goes here. Note that we use the MA term set of skeletal muscles here as it seems most appropriate (not MA:musculature)
|alt_id=UBERON:FBbt_00005069-FMA_30316-FMA_32558-MA_0000015-MIAA_0000025-WBbt_0005737-XAO_0000172-ZFA_0000548-ZFA_0005145
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A subdivision of the muscular system." [UBERON:cjm, Wikipedia:Muscular_system]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001015
|is_a=UBERON:0000480
|is_obsolete=
|located_in=
|located_in=
|name=musculature
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000383
|part_of=UBERON:0000383
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001474
|subset=uberon_slim;;vertebrate_core
|synonym="muscle group" EXACT [];;"muscle system" RELATED [];;"muscles" RELATED [];;"muscles set" EXACT [];;"musculature" EXACT [];;"musculature system" RELATED [];;"musculi" EXACT [FMA:32558, FMA:TA];;"set of muscles" EXACT [FMA:32558];;"set of organs" EXACT [];;"set of skeletal muscles" EXACT [MA:0000165]
|union_of=
|xref=AAO:0011066;;BTO:0000887;;EFO:0001949;;FMA:32558;;http://upload.wikimedia.org/wikipedia/commons/e/e5/Muscles_anterior_labeled.png;;MA:0000165;;ncithesaurus:Muscle;;OpenCyc:Mx4rvVjmr5wpEbGdrcN5Y29ycA;;TAO:0000548;;VSAO:0005038;;WBbt:0005737;;ZFA:0000548
}}
}}

Latest revision as of 17:14, 12 September 2014

Name:musculature
Namespace:FANTOM
Definition:"A subdivision of the muscular system." [UBERON:cjm, Wikipedia:Muscular_system]
Xrefs:
links:

AAO:0011066
BTO:0000887
EFO:0001949
FMA:32558
[ Muscles_anterior_labeled.png Muscles_anterior_labeled.png]
MA:0000165
ncithesaurus:Muscle
OpenCyc:Mx4rvVjmr5wpEbGdrcN5Y29ycA
TAO:0000548
VSAO:0005038
WBbt:0005737

ZFA:0000548
Synonyms: "muscle group" EXACT []
"muscle system" RELATED []
"muscles" RELATED []
"muscles set" EXACT []
"musculature" EXACT []
"musculature system" RELATED []
"musculi" EXACT [FMA:32558, FMA:TA]
"set of muscles" EXACT [FMA:32558]
"set of organs" EXACT []
"set of skeletal muscles" EXACT [MA:0000165]
Comments:AO notes: In FMA this is classified as a set of organs. ZFA musculature system has subtypes, so it is classified here. WBbt muscular system has subtypes so it goes here. Note that we use the MA term set of skeletal muscles here as it seems most appropriate (*not* MA:musculature). AAO is generally confused here.
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000480(anatomical group)
part_of:UBERON:0000383(musculature of body)



Children

is a:UBERON:0007271 (appendage musculature),UBERON:0008229 (craniocervical region musculature),UBERON:0013700 (axial musculature),UBERON:0014792 (musculature of pelvic complex)
part of:UBERON:0001630 (muscle organ),UBERON:0002385 (muscle tissue)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001015 (musculature), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.24e-58FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_82f28aa74ce76de002cac200d2b95ae0p@chrX:160838683..160838694, +
5.24e-58FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_82f28aa74ce76de002cac200d2b95ae0p@chrX:160838683..160838694, +
5.11e-50FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_deec90052b46a0ad046ae87f677609a8p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_deec90052b46a0ad046ae87f677609a8p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_deec90052b46a0ad046ae87f677609a8p@chr12:105433069..105433075, -
5.11e-50FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_deec90052b46a0ad046ae87f677609a8p@chr12:105433069..105433075, -
1.47e-48FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_7873a6f23c9afa94dc4fc9d363765594p@chrX:160838787..160838800, +
1.47e-48FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_7873a6f23c9afa94dc4fc9d363765594p@chrX:160838787..160838800, +
1.23e-45FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_57e509716edcd8afbcef681d55505ab8p@chr6:53359400..53359406, +
1.23e-45FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_57e509716edcd8afbcef681d55505ab8p@chr6:53359400..53359406, +
8.42e-44FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_510b485a02af47c6fe6596146f8bfe62p@chr11:81849982..81850000, +
8.42e-44FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_510b485a02af47c6fe6596146f8bfe62p@chr11:81849982..81850000, +
1.15e-40FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_fb09cc3df286d490c7da1ac8183d4963p@chr17:14813242..14813246, -
1.15e-40FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_fb09cc3df286d490c7da1ac8183d4963p@chr17:14813242..14813246, -
3.7e-39FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_85c405102d26b72cac20fe5774249ce0p4@Gpr39
3.7e-39FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_85c405102d26b72cac20fe5774249ce0p4@Gpr39
3.75e-39FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_81001fc217aba2b7f63e3d835da6e8aep@chrX:160840025..160840037, +
3.75e-39FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_81001fc217aba2b7f63e3d835da6e8aep@chrX:160823859..160823870, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_81001fc217aba2b7f63e3d835da6e8aep@chrX:160840025..160840037, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_81001fc217aba2b7f63e3d835da6e8aep@chrX:160840048..160840057, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_81001fc217aba2b7f63e3d835da6e8aep@chrX:160840048..160840057, +
3.75e-39FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_81001fc217aba2b7f63e3d835da6e8aep@chrX:160823859..160823870, +
4.49e-37FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_9e01a4d855c523524d05845e1e56f9acp2@LRRC17
4.49e-37FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_9e01a4d855c523524d05845e1e56f9acp2@LRRC17
7.76e-37FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_72ff00cb23ef1218b3fc38643db63299p@chr9:35685631..35685657, +
7.76e-37FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_72ff00cb23ef1218b3fc38643db63299p@chr9:35685631..35685657, +
1.55e-35FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_bd1bd776e8eddf88c7cfb6c9e9fb0188p8@ARHGAP22
1.55e-35FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_bd1bd776e8eddf88c7cfb6c9e9fb0188p8@ARHGAP22
3.31e-35FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_99494dd506437ef63c64a168aea7d203p11@Fam198b
3.31e-35FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_99494dd506437ef63c64a168aea7d203p11@Fam198b
3.69e-35FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_a5309ac66c63dc2b1f3b505eb9d585cap@chr1:127574253..127574264, +
3.69e-35FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_a5309ac66c63dc2b1f3b505eb9d585cap@chr1:127574253..127574264, +
5.09e-35FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_5528c55d397be596e3c020dd55834ac8p7@Gpr39
5.09e-35FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_5528c55d397be596e3c020dd55834ac8p7@Gpr39
5.98e-35FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_e3fd604bfd8f2a4ffdc506394857e327p11@Gpr39
5.98e-35FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_e3fd604bfd8f2a4ffdc506394857e327p11@Gpr39
7.03e-35FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_c7b7d4daff588ab4ee7c31ab68c7b19ep@chrX:160839768..160839780, +
7.03e-35FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_c7b7d4daff588ab4ee7c31ab68c7b19ep@chrX:160839768..160839780, +
1.33e-34FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_79921733bdc04e1e637278f21e3236a1p8@Gpr39
1.33e-34FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_79921733bdc04e1e637278f21e3236a1p8@Gpr39
2.4e-34FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_e8e444a5c2726e2134e2aa97532b32c3p4@ARHGAP22
2.4e-34FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_e8e444a5c2726e2134e2aa97532b32c3p4@ARHGAP22
4.34e-34FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_268bd044fadd742c901872871566f429p1@LRRC17
4.34e-34FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_268bd044fadd742c901872871566f429p1@LRRC17
1.01e-33FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_e112d1905ab513319a1436c4a1b1ebb1p@chr11:102661517..102661541, -
1.01e-33FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_e112d1905ab513319a1436c4a1b1ebb1p@chr11:102661517..102661541, -
3.36e-33FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_adb1484e9d5f15a30643cf5ab56ecfb0p@chr4:74703497..74703511, +
3.36e-33FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_adb1484e9d5f15a30643cf5ab56ecfb0p@chr4:74703497..74703511, +
9.96e-33FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_ef402240949b547113755d9724061b56p@chr9:35684475..35684520, +
9.96e-33FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_ef402240949b547113755d9724061b56p@chr9:35684475..35684520, +
1.11e-32FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_8118d6305376d8098cb877d3692aff0ep@chr4:7846444..7846449, -
1.11e-32FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_8118d6305376d8098cb877d3692aff0ep@chr4:7846444..7846449, -
1.38e-32FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_5bc942703e4f19d70d6e3dc99feef0e7p@chr9:35689148..35689192, +
1.38e-32FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_5bc942703e4f19d70d6e3dc99feef0e7p@chr9:35689148..35689192, +
3.94e-32FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_e1aa61d8c7b014c34aeefcba1278558cp@chr7:96658543..96658553, -
3.94e-32FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_e1aa61d8c7b014c34aeefcba1278558cp@chr7:96658543..96658553, -
6.63e-32FFCP PHASE2:Hg19::chr7:102553382..102553397,+#_1000d8056ffd8100cecfebe26bb40c7ep3@LRRC17
6.63e-32FFCP PHASE1:Hg19::chr7:102553382..102553397,+#_1000d8056ffd8100cecfebe26bb40c7ep3@LRRC17
1.03e-31FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_979a2dee9d4c5bfc531a2f39985dab2fp2@SASH1
1.03e-31FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_979a2dee9d4c5bfc531a2f39985dab2fp2@SASH1
1.33e-31FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_6c1016146c00fd010f96414c84ea2acep@chr7:91081998..91082010, -
1.33e-31FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_6c1016146c00fd010f96414c84ea2acep2@Il6
1.33e-31FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_6c1016146c00fd010f96414c84ea2acep2@Il6
1.33e-31FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_6c1016146c00fd010f96414c84ea2acep@chr7:91081998..91082010, -
1.59e-31FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_68eb685b4acf60ee1eb689b12cd4c331p@chr10:67598037..67598049, -
1.59e-31FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_68eb685b4acf60ee1eb689b12cd4c331p@chr10:67598037..67598049, -
2.52e-31FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_f78d47caabe7c0bddf48982117e1e6e1p@chr9:35685445..35685517, +
2.52e-31FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_f78d47caabe7c0bddf48982117e1e6e1p@chr9:35685445..35685517, +
2.72e-31FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_8bc7c466ecc7c430638dc9262c1aba2ep@chr2:65009852..65009866, -
2.72e-31FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_8bc7c466ecc7c430638dc9262c1aba2ep@chr2:65009852..65009866, -
2.8e-31FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_fbf5619fab1f34e1866224b17096b3b2p@chr18:52678391..52678395, -
2.8e-31FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_fbf5619fab1f34e1866224b17096b3b2p@chr18:52678391..52678395, -
4.49e-31FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_541f85dacfafdc5448cb2eb4cb48a137p@chr2:134548872..134548879, -
4.49e-31FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_541f85dacfafdc5448cb2eb4cb48a137p@chr2:134548872..134548879, -
4.6e-31FFCP PHASE2:Hg19::chr4:74702338..74702349,+#_b9821d56482e894ab4dd4a8b5f1ddadcp2@CXCL6
4.6e-31FFCP PHASE1:Hg19::chr4:74702338..74702349,+#_b9821d56482e894ab4dd4a8b5f1ddadcp2@CXCL6
6.22e-31FFCP PHASE1:Hg19::chr4:169059590..169059615,+#_cbc6c66124189117403fec4d97dbe2cap@chr4:169059590..169059615, +
6.22e-31FFCP PHASE2:Hg19::chr4:169059590..169059615,+#_cbc6c66124189117403fec4d97dbe2cap@chr4:169059590..169059615, +
7.65e-31FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_85468f6482b4d7ecd1a32ec451d1d26ep@chr6:91222095..91222107, +
7.65e-31FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_85468f6482b4d7ecd1a32ec451d1d26ep@chr6:91222095..91222107, +
1.01e-30FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_b2c907b5cbd597b39caa14f1ae75ecd2p9@Kctd10
1.01e-30FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_b2c907b5cbd597b39caa14f1ae75ecd2p9@Kctd10
1.17e-30FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_ea444236aeed94fbf2941b27af5d7df0p6@Gpr39
1.17e-30FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_ea444236aeed94fbf2941b27af5d7df0p6@Gpr39
1.33e-30FFCP PHASE2:Hg19::chr14:96722539..96722555,+#_65dc1efd1d8c8054c0d04ddd7c2317bfp1@BDKRB1
1.33e-30FFCP PHASE1:Hg19::chr14:96722539..96722555,+#_65dc1efd1d8c8054c0d04ddd7c2317bfp1@BDKRB1
1.34e-30FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_3d06acd9c0c4863aa17440b3d35f6216p3@IFI27L2
1.34e-30FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_3d06acd9c0c4863aa17440b3d35f6216p3@IFI27L2
1.55e-30FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_a7723f894e0349529cced113471444cbp1@CU675118
1.55e-30FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_a7723f894e0349529cced113471444cbp1@CU675118
1.72e-30FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_11e2431e252ebc245c4bff7ab4cab79dp2@ELTD1
1.72e-30FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_11e2431e252ebc245c4bff7ab4cab79dp2@ELTD1
6.51e-30FFCP PHASE1:Hg19::chr4:74702666..74702694,+#_161da9c0bdb8ead8801f37c444541bacp3@CXCL6
6.51e-30FFCP PHASE2:Hg19::chr4:74702666..74702694,+#_161da9c0bdb8ead8801f37c444541bacp3@CXCL6
7.66e-30FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_7ef278e455a0a8f7f05b5888a7f6efd3p@chr9:35685273..35685313, +
7.66e-30FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_7ef278e455a0a8f7f05b5888a7f6efd3p@chr9:35685273..35685313, +
8.47e-30FFCP PHASE1:Mm9::chr7:34998469..34998489,-#_1ebb2c949af9232aee821ed420f82ac9p@chr7:34998469..34998489, -
8.47e-30FFCP PHASE2:Mm9::chr7:34998469..34998489,-#_1ebb2c949af9232aee821ed420f82ac9p@chr7:34998469..34998489, -
8.84e-30FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_3d550f3c1bee9e683ce6f171bf0849edp@chr17:87574327..87574332, +
8.84e-30FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_3d550f3c1bee9e683ce6f171bf0849edp5@Adamts2

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