Personal tools

UBERON:0000915: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(6 intermediate revisions by 2 users not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000915
|name=thoracic segment of trunk
|namespace=
|def="Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax]
|xref=FMA:259209;;MA:0000022;;SCTID:302551006
|is_a=UBERON:0009569
|synonym="thorax" RELATED [MA:0000022];;"upper body" RELATED []
|comment=todo - taxonomic constraints. Originally this was defined loosely to include insect thorax but the value of such a high-level grouping class is dubious. Note that FMA distinsguishes between thorax and thoracic region of trunk
|alt_id=UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295
|alt_id=UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295
|disjoint_from=
|anatomical_img_id=FMA:9576
|union_of=
|comment=Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest
|created_by=
|created_by=
|obo_creation_date=
|def="Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000915
|is_a=UBERON:0009569 ;;UBERON:0011676
|is_obsolete=
|located_in=
|located_in=
|name=thoracic segment of trunk
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000026;;"spatially_disjoint_from" UBERON:0000033;;"spatially_disjoint_from" UBERON:0002417
|subset=uberon_slim
|synonym="thorax" RELATED [MA:0000022];;"upper body" RELATED []
|union_of=
|xref=FMA:259209;;MA:0000022;;SCTID:302551006
}}
}}

Latest revision as of 17:10, 12 September 2014

Name:thoracic segment of trunk
Namespace:FANTOM
Definition:"Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax]
Xrefs:
links:

FMA:259209
MA:0000022

SCTID:302551006
Synonyms: "thorax" RELATED [MA:0000022]
"upper body" RELATED []
Comments:Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest
Alt_id: UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0009569(subdivision of trunk),UBERON:0011676(subdivision of organism along main body axis)



Children

part of:UBERON:0001103 (diaphragm),UBERON:0001443 (chest),UBERON:0001515 (thoracic aorta),UBERON:0001533 (subclavian artery),UBERON:0002224 (thoracic cavity),UBERON:0003830 (thoracic segment muscle),UBERON:0003834 (thoracic segment blood vessel),UBERON:0005178 (thoracic cavity element),UBERON:0005181 (thoracic segment organ)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000915 (thoracic segment of trunk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.21e-66FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_fe636fc6e687180fb2d80fae7efb24b5p4@Tbx4
1.21e-66FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_fe636fc6e687180fb2d80fae7efb24b5p4@Tbx4
4.71e-66FFCP PHASE1:Mm9::chr9:20829911..20829920,+#_f6ab1f6bb35b813b88d5d63eb2ee9b30p@chr9:20829911..20829920, +
4.71e-66FFCP PHASE2:Mm9::chr9:20829911..20829920,+#_f6ab1f6bb35b813b88d5d63eb2ee9b30p@chr9:20829911..20829920, +
1.06e-62FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_2e975e11f521e8c0601ab9d3b5208e14p1@ENSMUST00000134305
1.06e-62FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_2e975e11f521e8c0601ab9d3b5208e14p1@ENSMUST00000134305
1.52e-61FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_58c86d732fe787686e4e8bffa372bca1p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
1.52e-61FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_58c86d732fe787686e4e8bffa372bca1p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
1.91e-61FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_e2338aee523ffe444367aae068a68fe4p6@Tbx4
1.91e-61FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_e2338aee523ffe444367aae068a68fe4p6@Tbx4
5.56e-61FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_f3ee3e855a6dc23811f81695e91fa8f4p@chr12:57636003..57636017, -
5.56e-61FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_f3ee3e855a6dc23811f81695e91fa8f4p@chr12:57598716..57598720, -
5.56e-61FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_f3ee3e855a6dc23811f81695e91fa8f4p@chr11:59457994..59457997, -
5.56e-61FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_f3ee3e855a6dc23811f81695e91fa8f4p@chr8:94878479..94878503, -
5.56e-61FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_f3ee3e855a6dc23811f81695e91fa8f4p@chr11:59457994..59457997, -
5.56e-61FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_f3ee3e855a6dc23811f81695e91fa8f4p@chr12:57598716..57598720, -
5.56e-61FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_f3ee3e855a6dc23811f81695e91fa8f4p@chr8:94878479..94878503, -
5.56e-61FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_f3ee3e855a6dc23811f81695e91fa8f4p@chr4:138812977..138812992, +
5.56e-61FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_f3ee3e855a6dc23811f81695e91fa8f4p@chr4:138812977..138812992, +
5.56e-61FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_f3ee3e855a6dc23811f81695e91fa8f4p@chr12:57636003..57636017, -
1.35e-60FFCP PHASE1:Mm9::chr7:56809246..56809272,+#_9cf0d12f6fbf8dfe440f78c37cb1a508p9@Nav2
1.35e-60FFCP PHASE2:Mm9::chr7:56809246..56809272,+#_9cf0d12f6fbf8dfe440f78c37cb1a508p9@Nav2
2.87e-58FFCP PHASE2:Mm9::chr12:57633887..57633899,-#_c90c3339c6c69fb8676193d805dfb505p@chr12:57633887..57633899, -
2.87e-58FFCP PHASE1:Mm9::chr12:57633887..57633899,-#_c90c3339c6c69fb8676193d805dfb505p@chr12:57633887..57633899, -
1.23e-57FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_7d305fd7c6fe9fd1a08b4b2b171d72fdp8@Nkx2-1
1.23e-57FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_7d305fd7c6fe9fd1a08b4b2b171d72fdp8@Nkx2-1
1.37e-57FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_4c019bc36825c5a5d858106a03a3d218p2@E030019B13Rik
1.37e-57FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_4c019bc36825c5a5d858106a03a3d218p2@E030019B13Rik
1.53e-57FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_f1f4b6277f9742280398cdfc6dd7ac78p10@Nebl
1.53e-57FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_f1f4b6277f9742280398cdfc6dd7ac78p10@Nebl
1.7e-57FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_d8f2b0573fca60d2525bc98af64f4b55p9@Nkx2-1
1.7e-57FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_d8f2b0573fca60d2525bc98af64f4b55p9@Nkx2-1
1.79e-56FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_f633d9a2e18a4bd55b7db2df7e873769p3@E030019B13Rik
1.79e-56FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_f633d9a2e18a4bd55b7db2df7e873769p@chr12:57598537..57598547, -
1.79e-56FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_f633d9a2e18a4bd55b7db2df7e873769p3@Trpm6
1.79e-56FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_f633d9a2e18a4bd55b7db2df7e873769p3@Trpm6
1.79e-56FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_f633d9a2e18a4bd55b7db2df7e873769p@chr12:57598537..57598547, -
1.79e-56FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_f633d9a2e18a4bd55b7db2df7e873769p3@E030019B13Rik
2.01e-56FFCP PHASE1:Mm9::chr12:57636278..57636289,+#_c409d3f25876e144f9a89ec2832f6e39p@chr12:57636278..57636289, +
2.01e-56FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_c409d3f25876e144f9a89ec2832f6e39p@chr14:115241755..115241762, -
2.01e-56FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_c409d3f25876e144f9a89ec2832f6e39p@chr14:115241755..115241762, -
2.01e-56FFCP PHASE2:Mm9::chr12:57636278..57636289,+#_c409d3f25876e144f9a89ec2832f6e39p@chr12:57636278..57636289, +
2.24e-56FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_3524a6a64479f6d66b7796a35403d82fp@chr4:138812999..138813015, +
2.24e-56FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_3524a6a64479f6d66b7796a35403d82fp@chr4:138812999..138813015, +
3.93e-56FFCP PHASE2:Mm9::chr1:40522810..40522820,+#_aec89c6c1789b2e49b32e375981a7666p7@Il18r1
3.93e-56FFCP PHASE1:Mm9::chr1:40522810..40522820,+#_aec89c6c1789b2e49b32e375981a7666p7@Il18r1
6.2e-56FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_09ea7bc94be0a44a275a35b3f8505a05p@chr14:70922576..70922589, -
6.2e-56FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_09ea7bc94be0a44a275a35b3f8505a05p@chr14:70921265..70921285, -
6.2e-56FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_09ea7bc94be0a44a275a35b3f8505a05p@chr1:184610062..184610074, +
6.2e-56FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_09ea7bc94be0a44a275a35b3f8505a05p3@Sftpb
6.2e-56FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_09ea7bc94be0a44a275a35b3f8505a05p4@Sftpb
6.2e-56FFCP PHASE1:Mm9::chr2:164374820..164374835,-#_09ea7bc94be0a44a275a35b3f8505a05p@chr2:164374820..164374835, -
6.2e-56FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_09ea7bc94be0a44a275a35b3f8505a05p@chr14:70921265..70921285, -
6.2e-56FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_09ea7bc94be0a44a275a35b3f8505a05p@chr1:184610062..184610074, +
6.2e-56FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_09ea7bc94be0a44a275a35b3f8505a05p@chr2:66524237..66524246, -
6.2e-56FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_09ea7bc94be0a44a275a35b3f8505a05p3@Sftpb
6.2e-56FFCP PHASE2:Mm9::chr2:164374820..164374835,-#_09ea7bc94be0a44a275a35b3f8505a05p@chr2:164374820..164374835, -
6.2e-56FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_09ea7bc94be0a44a275a35b3f8505a05p4@Sftpb
6.2e-56FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_09ea7bc94be0a44a275a35b3f8505a05p@chr14:70922576..70922589, -
6.2e-56FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_09ea7bc94be0a44a275a35b3f8505a05p@chr2:66524237..66524246, -
9.42e-56FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_9e8e48ac1dc0313625ebe1e3e8247ba8p@chr5:120282691..120282701, +
9.42e-56FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_9e8e48ac1dc0313625ebe1e3e8247ba8p@chr5:120282691..120282701, +
1.34e-54FFCP PHASE1:Mm9::chr12:57636911..57636924,-#_5d353484df35e3dd4a003f08aa612f08p@chr12:57636911..57636924, -
1.34e-54FFCP PHASE2:Mm9::chr12:57636911..57636924,-#_5d353484df35e3dd4a003f08aa612f08p@chr12:57636911..57636924, -
3.97e-54FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_28bdcf871653a7e55bc069bfd5992e2cp4@E030019B13Rik
3.97e-54FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_28bdcf871653a7e55bc069bfd5992e2cp4@E030019B13Rik
1.46e-52FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_394ce1fe7f324ed0cd7506a6a8ca7490p@chr14:70922007..70922052, +
1.46e-52FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_394ce1fe7f324ed0cd7506a6a8ca7490p@chr12:57623172..57623185, -
1.46e-52FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_394ce1fe7f324ed0cd7506a6a8ca7490p@chr14:70922007..70922052, +
1.46e-52FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_394ce1fe7f324ed0cd7506a6a8ca7490p@chr12:57623172..57623185, -
1.62e-52FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_8481da85944ecd2793f4e6bc41e0d340p@chr5:28785436..28785450, -
1.62e-52FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_8481da85944ecd2793f4e6bc41e0d340p@chr5:28785436..28785450, -
1.8e-52FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_79cc91ddba3de2f1fad9428c2ff7ee4dp@chr14:70922459..70922482, -
1.8e-52FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_79cc91ddba3de2f1fad9428c2ff7ee4dp@chr14:70922459..70922482, -
5.65e-52FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_1ede1bb7a3d0b4a4f39a469c21b0bcb8p4@Etv5
5.65e-52FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_1ede1bb7a3d0b4a4f39a469c21b0bcb8p4@Etv5
1.97e-51FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_a709d95820a810f510806e9a196bc60ep@chr6:72259797..72259814, +
1.97e-51FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_a709d95820a810f510806e9a196bc60ep@chr6:72263977..72263993, +
1.97e-51FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_a709d95820a810f510806e9a196bc60ep@chr14:70923240..70923251, -
1.97e-51FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_a709d95820a810f510806e9a196bc60ep@chr6:72264890..72264911, +
1.97e-51FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_a709d95820a810f510806e9a196bc60ep@chr14:70922486..70922510, -
1.97e-51FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_a709d95820a810f510806e9a196bc60ep@chr6:72264890..72264911, +
1.97e-51FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_a709d95820a810f510806e9a196bc60ep@chr6:72259797..72259814, +
1.97e-51FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_a709d95820a810f510806e9a196bc60ep@chr14:70923240..70923251, -
1.97e-51FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_a709d95820a810f510806e9a196bc60ep4@Lamp3
1.97e-51FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_a709d95820a810f510806e9a196bc60ep@chr6:72263977..72263993, +
1.97e-51FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_a709d95820a810f510806e9a196bc60ep@chr14:70922486..70922510, -
1.97e-51FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_a709d95820a810f510806e9a196bc60ep@chr6:72264418..72264441, +
1.97e-51FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_a709d95820a810f510806e9a196bc60ep@chr6:72264418..72264441, +
1.97e-51FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_a709d95820a810f510806e9a196bc60ep@chr12:57376690..57376716, -
1.97e-51FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_a709d95820a810f510806e9a196bc60ep@chr12:57376690..57376716, -
1.97e-51FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_a709d95820a810f510806e9a196bc60ep4@Lamp3
2.21e-51FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_1e06a500c6a76dfb089e9144e3df7f9cp@chr6:72264609..72264653, -
2.21e-51FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_1e06a500c6a76dfb089e9144e3df7f9cp@chr6:72264609..72264653, -
2.47e-51FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_1876b157eb88e40e63061f9184cffef0p@chr6:129378567..129378573, -
2.47e-51FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_1876b157eb88e40e63061f9184cffef0p@chr6:129378567..129378573, -
3.74e-51FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_e1658d19cba8f4bc6e9b976d55cf35e4p16@Pde5a
3.74e-51FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_e1658d19cba8f4bc6e9b976d55cf35e4p16@Pde5a
5.44e-51FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_7295c9d0c6d468909a247f56d3cfe8b4p7@Nkx2-1
5.44e-51FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_7295c9d0c6d468909a247f56d3cfe8b4p7@Nkx2-1

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000915&oldid=3277133"