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{{UBERON
{{UBERON
|id=UBERON:0000411
|alt_id=UBERON:BTO_0001857-FMA_242644
|name=visual cortex
|namespace=
|def="Area of the occipital lobe concerned with vision." [MESH:A.08.186.211.730.885.213.571.735]
|xref=BTO:0001857;;EFO:0000916;;EV:0100171;;FMA:242644;;GAID:679;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Brodmann_areas_17_18_19.png/200px-Brodmann_areas_17_18_19.png;;MESH:A.08.186.211.730.885.213.571.735
|is_a=UBERON:0002619
|synonym="striate cortex" RELATED [MESH:A.08.186.211.730.885.213.571.735];;"V1" RELATED [Wikipedia:Visual_cortex]
|comment=Editor note: merge with primary visual cortex? FMA and BTO treat as distinct
|comment=Editor note: merge with primary visual cortex? FMA and BTO treat as distinct
|alt_id=UBERON:BTO_0001857-FMA_242644
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Area of the occipital lobe concerned with vision." [MESH:A.08.186.211.730.885.213.571.735]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000411
|is_a=UBERON:0002619
|is_obsolete=
|located_in=
|located_in=
|name=visual cortex
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002021
|part_of=UBERON:0002021
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="striate cortex" RELATED [MESH:A.08.186.211.730.885.213.571.735];;"V1" RELATED [Wikipedia:Visual_cortex]
|union_of=
|xref=BTO:0001857;;EFO:0000916;;EV:0100171;;FMA:242644;;GAID:679;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Brodmann_areas_17_18_19.png/200px-Brodmann_areas_17_18_19.png;;MESH:A.08.186.211.730.885.213.571.735
}}
}}

Latest revision as of 17:09, 12 September 2014

Name:visual cortex
Namespace:FANTOM
Definition:"Area of the occipital lobe concerned with vision." [MESH:A.08.186.211.730.885.213.571.735]
Xrefs:
links:

BTO:0001857
EFO:0000916
EV:0100171
FMA:242644
GAID:679
[ 200px-Brodmann_areas_17_18_19.png 200px-Brodmann_areas_17_18_19.png]

MESH:A.08.186.211.730.885.213.571.735
Synonyms: "striate cortex" RELATED [MESH:A.08.186.211.730.885.213.571.735]
"V1" RELATED [Wikipedia:Visual_cortex]
Comments:Editor note: merge with primary visual cortex? FMA and BTO treat as distinct
Alt_id: UBERON:BTO_0001857-FMA_242644

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002619(regional part of cerebral cortex)
part_of:UBERON:0002021(occipital lobe)



Children

is a:FF:10349-105D7 (visual cortex - wildtype),FF:10350-105D8 (visual cortex - Mecp knockout)
derives from:FF:0011268 (mouse visual cortex from wildtype- neonate N15 sample),FF:0011269 (mouse visual cortex from wildtype- neonate N30 sample),FF:0011270 (mouse visual cortex from wildtype- neonate N60-70 sample),FF:0011271 (mouse visual cortex from Mecp knockout- neonate N15 sample),FF:0011272 (mouse visual cortex from Mecp knockout- neonate N30 sample),FF:0011273 (mouse visual cortex from Mecp knockout- neonate N60-70 sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000411 (visual cortex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.31e-86FFCP PHASE1:Mm9::chr11:17100262..17100269,+#_28381004ddd65ccc3aa357593d659c1fp@chr11:17100262..17100269, +
1.31e-86FFCP PHASE1:Mm9::chr18:40430194..40430203,+#_28381004ddd65ccc3aa357593d659c1fp@chr18:40430194..40430203, +
1.31e-86FFCP PHASE2:Mm9::chr18:40430194..40430203,+#_28381004ddd65ccc3aa357593d659c1fp@chr18:40430194..40430203, +
1.31e-86FFCP PHASE1:Mm9::chr13:42849190..42849201,+#_28381004ddd65ccc3aa357593d659c1fp@chr13:42849190..42849201, +
1.31e-86FFCP PHASE1:Mm9::chr1:126502309..126502340,-#_28381004ddd65ccc3aa357593d659c1fp@chr1:126502309..126502340, -
1.31e-86FFCP PHASE2:Mm9::chr1:126502309..126502340,-#_28381004ddd65ccc3aa357593d659c1fp@chr1:126502309..126502340, -
1.31e-86FFCP PHASE2:Mm9::chr1:126400744..126400756,-#_28381004ddd65ccc3aa357593d659c1fp@chr1:126400744..126400756, -
1.31e-86FFCP PHASE1:Mm9::chr2:7223539..7223546,-#_28381004ddd65ccc3aa357593d659c1fp@chr2:7223539..7223546, -
1.31e-86FFCP PHASE2:Mm9::chr1:126404292..126404301,-#_28381004ddd65ccc3aa357593d659c1fp@chr1:126404292..126404301, -
1.31e-86FFCP PHASE1:Mm9::chr1:126404292..126404301,-#_28381004ddd65ccc3aa357593d659c1fp@chr1:126404292..126404301, -
1.31e-86FFCP PHASE2:Mm9::chr2:7223539..7223546,-#_28381004ddd65ccc3aa357593d659c1fp@chr2:7223539..7223546, -
1.31e-86FFCP PHASE2:Mm9::chr11:17100262..17100269,+#_28381004ddd65ccc3aa357593d659c1fp@chr11:17100262..17100269, +
1.31e-86FFCP PHASE2:Mm9::chr13:42849190..42849201,+#_28381004ddd65ccc3aa357593d659c1fp@chr13:42849190..42849201, +
1.31e-86FFCP PHASE2:Mm9::chr6:80020704..80020735,+#_28381004ddd65ccc3aa357593d659c1fp@chr6:80020704..80020735, +
1.31e-86FFCP PHASE1:Mm9::chr1:126400744..126400756,-#_28381004ddd65ccc3aa357593d659c1fp@chr1:126400744..126400756, -
1.31e-86FFCP PHASE1:Mm9::chr6:80020704..80020735,+#_28381004ddd65ccc3aa357593d659c1fp@chr6:80020704..80020735, +
3.9e-79FFCP PHASE1:Mm9::chr1:126717072..126717109,-#_ea3f72708ce171e8187611568741f8afp@chr1:126717072..126717109, -
3.9e-79FFCP PHASE1:Mm9::chr1:126105041..126105050,-#_ea3f72708ce171e8187611568741f8afp@chr1:126105041..126105050, -
3.9e-79FFCP PHASE2:Mm9::chr1:126400758..126400783,-#_ea3f72708ce171e8187611568741f8afp@chr1:126400758..126400783, -
3.9e-79FFCP PHASE1:Mm9::chr8:17186907..17186917,-#_ea3f72708ce171e8187611568741f8afp@chr8:17186907..17186917, -
3.9e-79FFCP PHASE1:Mm9::chr1:126619902..126619921,-#_ea3f72708ce171e8187611568741f8afp@chr1:126619902..126619921, -
3.9e-79FFCP PHASE2:Mm9::chr1:126105041..126105050,-#_ea3f72708ce171e8187611568741f8afp@chr1:126105041..126105050, -
3.9e-79FFCP PHASE1:Mm9::chr7:99597472..99597476,+#_ea3f72708ce171e8187611568741f8afp@chr7:99597472..99597476, +
3.9e-79FFCP PHASE2:Mm9::chr7:90680238..90680241,-#_ea3f72708ce171e8187611568741f8afp@chr7:90680238..90680241, -
3.9e-79FFCP PHASE2:Mm9::chr1:126104837..126104853,-#_ea3f72708ce171e8187611568741f8afp@chr1:126104837..126104853, -
3.9e-79FFCP PHASE2:Mm9::chr15:20450265..20450266,+#_ea3f72708ce171e8187611568741f8afp@chr15:20450265..20450266, +
3.9e-79FFCP PHASE1:Mm9::chr2:20291839..20291846,+#_ea3f72708ce171e8187611568741f8afp@chr2:20291839..20291846, +
3.9e-79FFCP PHASE2:Mm9::chr2:20291839..20291846,+#_ea3f72708ce171e8187611568741f8afp@chr2:20291839..20291846, +
3.9e-79FFCP PHASE2:Mm9::chr14:40201667..40201703,-#_ea3f72708ce171e8187611568741f8afp@chr14:40201667..40201703, -
3.9e-79FFCP PHASE2:Mm9::chr16:6986792..6986801,+#_ea3f72708ce171e8187611568741f8afp@chr16:6986792..6986801, +
3.9e-79FFCP PHASE2:Mm9::chr7:99597472..99597476,+#_ea3f72708ce171e8187611568741f8afp@chr7:99597472..99597476, +
3.9e-79FFCP PHASE2:Mm9::chr1:126203760..126203764,-#_ea3f72708ce171e8187611568741f8afp@chr1:126203760..126203764, -
3.9e-79FFCP PHASE1:Mm9::chr1:126203760..126203764,-#_ea3f72708ce171e8187611568741f8afp@chr1:126203760..126203764, -
3.9e-79FFCP PHASE1:Mm9::chr1:126652982..126652992,-#_ea3f72708ce171e8187611568741f8afp@chr1:126652982..126652992, -
3.9e-79FFCP PHASE1:Mm9::chr4:76560610..76560659,-#_ea3f72708ce171e8187611568741f8afp@chr4:76560610..76560659, -
3.9e-79FFCP PHASE1:Mm9::chr4:77468821..77468823,-#_ea3f72708ce171e8187611568741f8afp@chr4:77468821..77468823, -
3.9e-79FFCP PHASE1:Mm9::chr14:40201667..40201703,-#_ea3f72708ce171e8187611568741f8afp@chr14:40201667..40201703, -
3.9e-79FFCP PHASE2:Mm9::chr4:77434471..77434475,-#_ea3f72708ce171e8187611568741f8afp@chr4:77434471..77434475, -
3.9e-79FFCP PHASE2:Mm9::chr4:76560610..76560659,-#_ea3f72708ce171e8187611568741f8afp@chr4:76560610..76560659, -
3.9e-79FFCP PHASE2:Mm9::chr4:77468821..77468823,-#_ea3f72708ce171e8187611568741f8afp@chr4:77468821..77468823, -
3.9e-79FFCP PHASE1:Mm9::chr1:126104837..126104853,-#_ea3f72708ce171e8187611568741f8afp@chr1:126104837..126104853, -
3.9e-79FFCP PHASE2:Mm9::chr8:17186907..17186917,-#_ea3f72708ce171e8187611568741f8afp@chr8:17186907..17186917, -
3.9e-79FFCP PHASE1:Mm9::chr7:90680238..90680241,-#_ea3f72708ce171e8187611568741f8afp@chr7:90680238..90680241, -
3.9e-79FFCP PHASE1:Mm9::chr16:6986792..6986801,+#_ea3f72708ce171e8187611568741f8afp@chr16:6986792..6986801, +
3.9e-79FFCP PHASE2:Mm9::chr7:52430433..52430443,+#_ea3f72708ce171e8187611568741f8afp@chr7:52430433..52430443, +
3.9e-79FFCP PHASE2:Mm9::chr1:126717072..126717109,-#_ea3f72708ce171e8187611568741f8afp@chr1:126717072..126717109, -
3.9e-79FFCP PHASE1:Mm9::chr15:20450265..20450266,+#_ea3f72708ce171e8187611568741f8afp@chr15:20450265..20450266, +
3.9e-79FFCP PHASE1:Mm9::chr4:77434471..77434475,-#_ea3f72708ce171e8187611568741f8afp@chr4:77434471..77434475, -
3.9e-79FFCP PHASE1:Mm9::chr7:52430433..52430443,+#_ea3f72708ce171e8187611568741f8afp@chr7:52430433..52430443, +
3.9e-79FFCP PHASE2:Mm9::chr1:126652982..126652992,-#_ea3f72708ce171e8187611568741f8afp@chr1:126652982..126652992, -
3.9e-79FFCP PHASE2:Mm9::chr1:126619902..126619921,-#_ea3f72708ce171e8187611568741f8afp@chr1:126619902..126619921, -
3.9e-79FFCP PHASE1:Mm9::chr1:126400758..126400783,-#_ea3f72708ce171e8187611568741f8afp@chr1:126400758..126400783, -
4.7e-79FFCP PHASE2:Mm9::chr1:126619952..126619959,-#_0032715cc9f03c61f3e5c653ef25184cp@chr1:126619952..126619959, -
4.7e-79FFCP PHASE1:Mm9::chr1:126619952..126619959,-#_0032715cc9f03c61f3e5c653ef25184cp@chr1:126619952..126619959, -
4.7e-79FFCP PHASE2:Mm9::chr9:37352150..37352163,-#_0032715cc9f03c61f3e5c653ef25184cp@chr9:37352150..37352163, -
4.7e-79FFCP PHASE1:Mm9::chr4:126885535..126885547,+#_0032715cc9f03c61f3e5c653ef25184cp@chr4:126885535..126885547, +
4.7e-79FFCP PHASE2:Mm9::chr4:126885535..126885547,+#_0032715cc9f03c61f3e5c653ef25184cp@chr4:126885535..126885547, +
4.7e-79FFCP PHASE1:Mm9::chr9:37352150..37352163,-#_0032715cc9f03c61f3e5c653ef25184cp@chr9:37352150..37352163, -
5.66e-79FFCP PHASE2:Mm9::chr1:126404318..126404329,-#_cd68e94da2b023c68ce71b2082225db7p@chr1:126404318..126404329, -
5.66e-79FFCP PHASE2:Mm9::chr2:129870267..129870276,+#_cd68e94da2b023c68ce71b2082225db7p@chr2:129870267..129870276, +
5.66e-79FFCP PHASE1:Mm9::chr1:126404318..126404329,-#_cd68e94da2b023c68ce71b2082225db7p@chr1:126404318..126404329, -
5.66e-79FFCP PHASE1:Mm9::chr2:129870267..129870276,+#_cd68e94da2b023c68ce71b2082225db7p@chr2:129870267..129870276, +
6.82e-79FFCP PHASE1:Mm9::chr18:40431328..40431331,+#_2551ba42d764e614995d3f490a140e5dp@chr18:40431328..40431331, +
6.82e-79FFCP PHASE2:Mm9::chr18:40431328..40431331,+#_2551ba42d764e614995d3f490a140e5dp@chr18:40431328..40431331, +
5.74e-78FFCP PHASE2:Mm9::chr6:102215690..102215693,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr6:102215690..102215693, -
5.74e-78FFCP PHASE2:Mm9::chr7:64568462..64568466,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr7:64568462..64568466, -
5.74e-78FFCP PHASE2:Mm9::chr9:37353524..37353532,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr9:37353524..37353532, +
5.74e-78FFCP PHASE2:Mm9::chr7:98325289..98325298,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr7:98325289..98325298, +
5.74e-78FFCP PHASE2:Mm9::chr15:20964798..20964802,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr15:20964798..20964802, +
5.74e-78FFCP PHASE2:Mm9::chr4:138013853..138013861,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr4:138013853..138013861, +
5.74e-78FFCP PHASE1:Mm9::chr1:156389511..156389544,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:156389511..156389544, -
5.74e-78FFCP PHASE1:Mm9::chr1:126136825..126136836,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:126136825..126136836, -
5.74e-78FFCP PHASE1:Mm9::chr2:42019112..42019120,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr2:42019112..42019120, -
5.74e-78FFCP PHASE2:Mm9::chr16:75308220..75308224,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr16:75308220..75308224, -
5.74e-78FFCP PHASE1:Mm9::chr1:126099259..126099261,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:126099259..126099261, -
5.74e-78FFCP PHASE2:Mm9::chr1:126136825..126136836,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:126136825..126136836, -
5.74e-78FFCP PHASE2:Mm9::chr6:110711128..110711143,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr6:110711128..110711143, +
5.74e-78FFCP PHASE1:Mm9::chr15:20964798..20964802,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr15:20964798..20964802, +
5.74e-78FFCP PHASE1:Mm9::chr9:37353524..37353532,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr9:37353524..37353532, +
5.74e-78FFCP PHASE1:Mm9::chr7:64568462..64568466,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr7:64568462..64568466, -
5.74e-78FFCP PHASE1:Mm9::chr16:75308220..75308224,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr16:75308220..75308224, -
5.74e-78FFCP PHASE1:Mm9::chr4:76204951..76204975,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr4:76204951..76204975, -
5.74e-78FFCP PHASE1:Mm9::chr4:138013853..138013861,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr4:138013853..138013861, +
5.74e-78FFCP PHASE1:Mm9::chr7:98325289..98325298,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr7:98325289..98325298, +
5.74e-78FFCP PHASE2:Mm9::chr4:76204951..76204975,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr4:76204951..76204975, -
5.74e-78FFCP PHASE1:Mm9::chr10:109586641..109586671,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr10:109586641..109586671, -
5.74e-78FFCP PHASE2:Mm9::chr10:109586641..109586671,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr10:109586641..109586671, -
5.74e-78FFCP PHASE2:Mm9::chr1:126311174..126311222,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:126311174..126311222, -
5.74e-78FFCP PHASE2:Mm9::chr2:62918160..62918168,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr2:62918160..62918168, -
5.74e-78FFCP PHASE2:Mm9::chr1:156389511..156389544,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:156389511..156389544, -
5.74e-78FFCP PHASE2:Mm9::chr1:126099259..126099261,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:126099259..126099261, -
5.74e-78FFCP PHASE1:Mm9::chr2:62918160..62918168,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr2:62918160..62918168, -
5.74e-78FFCP PHASE2:Mm9::chr1:126461420..126461468,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:126461420..126461468, -
5.74e-78FFCP PHASE2:Mm9::chr2:42019112..42019120,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr2:42019112..42019120, -
5.74e-78FFCP PHASE1:Mm9::chr6:102215690..102215693,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr6:102215690..102215693, -
5.74e-78FFCP PHASE1:Mm9::chr1:126461420..126461468,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:126461420..126461468, -
5.74e-78FFCP PHASE1:Mm9::chr6:110711128..110711143,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr6:110711128..110711143, +
5.74e-78FFCP PHASE1:Mm9::chr1:126311174..126311222,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:126311174..126311222, -
6.62e-73FFCP PHASE1:Mm9::chr4:77421232..77421237,-#_96716259b1db4bee8be156d1763f1285p@chr4:77421232..77421237, -
6.62e-73FFCP PHASE2:Mm9::chr1:126688121..126688168,-#_96716259b1db4bee8be156d1763f1285p@chr1:126688121..126688168, -

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