FF:16-22A4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005905 | ||
|accession_numbers=CAGE;DRX008944;DRR009818;DRZ001243;DRZ002626;DRZ012593;DRZ013976 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002259,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002950,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001891,UBERON:0002314 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000998,FF:0000004,FF:0011283 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr16:91270004..91270023,+!p1@Olig1!2.26!204.46!Olig1;;chr5:138199361..138199441,+!p2@Tsc22d4!1.99!175.55!Tsc22d4;;chr17:48015839..48015915,-!p3@Foxp4!1.72!60.22!Foxp4;;chr12:30219426..30219506,+!p2@Myt1l!1.69!48.53!Myt1l;;chr16:91225808..91225824,+!p1@Olig2!1.66!45.24!Olig2;;chr2:163051181..163051205,+!p2@Tox2!1.66!44.79!Tox2;;chr7:116154364..116154444,+!p1@Tub!1.64!72.50!Tub;;chrX:34442872..34442899,-!p1@Nkrf!1.56!44.94!Nkrf;;chr4:58956447..58956510,+!p1@Zkscan16!1.53!70.55!Zkscan16;;chr2:65683890..65683907,+!p1@Csrnp3!1.53!62.01!Csrnp3;;chr15:76353005..76353021,-!p2@Scrt1!1.52!32.35!Scrt1;;chr19:19185671..19185693,-!p1@Rorb!1.49!69.95!Rorb;;chr18:36441119..36441158,+!p2@Pura!1.46!65.76!Pura;;chr10:67375146..67375208,-!p2@Zfp365!1.45!40.59!Zfp365;;chr15:76352434..76352488,-!p4@Scrt1!1.43!25.91!Scrt1;;chr4:150482563..150482655,-!p2@Camta1!1.42!87.78!Camta1;;chr1:140739014..140739032,-!p1@Lhx9!1.42!31.61!Lhx9;;chr19:55972441..55972456,+!p18@Tcf7l2!1.41!24.42!Tcf7l2;;chr7:148008023..148008092,-!p1@Zfp941!1.40!57.07!Zfp941;;chr14:49287186..49287225,-!p1@Otx2!1.40!24.27!Otx2;;chr2:127347067..127347093,-!p1@Kcnip3!1.39!38.95!Kcnip3;;chr8:24780125..24780143,+!p1@Zmat4!1.37!31.91!Zmat4;;chr15:76352677..76352737,-!p3@Scrt1!1.34!21.12!Scrt1;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.33!25.91!Pou3f3;;chr4:150513630..150513686,-!p4@Camta1!1.33!23.22!Camta1;;chr3:95032091..95032183,-!p1@Mllt11!1.32!166.57!Mllt11;;chr17:25707623..25707639,-!p1@Sox8!1.31!81.34!Sox8;;chr2:168427068..168427115,-!p3@Nfatc2!1.30!19.02!Nfatc2;;chr7:146768691..146768707,-!p1@Nkx6-2!1.29!18.72!Nkx6-2;;chr10:67375368..67375433,-!p1@Zfp365!1.28!31.61!Zfp365;;chr8:107793688..107793736,+!p1@Hsf4!1.28!23.52!Hsf4;;chr19:55972403..55972421,+!p22@Tcf7l2!1.27!17.53!Tcf7l2;;chr12:54349410..54349461,+!p1@Npas3!1.26!20.82!Npas3;;chr15:78994907..78994926,-!p1@Sox10!1.23!40.44!Sox10;;chr9:99776566..99776612,-!p1@Sox14!1.23!16.18!Sox14;;chr1:6477388..6477419,+!p3@St18!1.21!15.28!St18;;chr2:163030219..163030258,+!p5@Tox2!1.20!14.83!Tox2;;chr10:84218800..84218829,+!p2@Rfx4!1.20!14.83!Rfx4;;chrX:108009761..108009788,+!p1@Pou3f4!1.19!14.53!Pou3f4;;chr2:127347042..127347058,-!p3@Kcnip3!1.17!13.63!Kcnip3;;chr16:91270091..91270143,+!p2@Olig1!1.15!13.18!Olig1;;chrX:34442842..34442866,-!p3@Nkrf!1.15!13.03!Nkrf;;chr13:72766250..72766273,+!p1@Irx2!1.13!19.32!Irx2;;chr19:55969923..55969944,+!p6@Tcf7l2!1.13!12.58!Tcf7l2;;chr2:163030186..163030204,+!p4@Tox2!1.13!12.43!Tox2;;chr11:90252223..90252240,-!p1@Hlf!1.12!100.66!Hlf;;chr15:103170533..103170556,-!p1@Zfp385a!1.12!45.54!Zfp385a;;chr14:104867201..104867258,-!p1@Pou4f1!1.10!16.33!Pou4f1;;chr5:122499831..122499891,-!p1@Cux2!1.09!17.38!Cux2;;chr2:162769220..162769252,+!p1@L3mbtl1!1.08!10.93!L3mbtl1;;chr11:96685444..96685473,-!p5@Nfe2l1!1.07!10.64!Nfe2l1;;chr10:84218895..84218909,+!p1@Rfx4!1.07!10.64!Rfx4;;chr3:95032515..95032553,-!p5@Mllt11!1.05!12.28!Mllt11;;chr19:55968967..55968991,+!p7@Tcf7l2!1.05!10.19!Tcf7l2;;chr9:91260616..91260653,-!p2@Zic1!1.04!10.04!Zic1;;chr11:98636531..98636559,-!p1@Nr1d1!1.03!55.57!Nr1d1;;chr9:91260594..91260612,-!p1@Zic1!1.03!9.74!Zic1;;chr15:103170516..103170531,-!p2@Zfp385a!1.02!22.77!Zfp385a;;chr13:44936126..44936164,+!p6@Jarid2!1.02!11.08!Jarid2;;chr8:12395603..12395621,+!p1@Sox1!1.02!9.59!Sox1;;chr3:34548946..34548972,+!p2@Sox2!1.01!10.19!Sox2;;chr12:30213247..30213333,+!p1@Myt1l!1.01!9.29!Myt1l;;chr19:55969946..55969973,+!p8@Tcf7l2!1.01!9.29!Tcf7l2;;chr2:65768174..65768247,+!p2@Csrnp3!1.01!9.14!Csrnp3;;chr4:150482353..150482386,-!p6@Camta1!1.01!9.14!Camta1;;chr3:95032213..95032226,-!p6@Mllt11!1.00!10.93!Mllt11;;chrX:137083127..137083138,-!p9@Tsc22d3!1.00!8.99!Tsc22d3;;chr6:117813087..117813121,+!p1@Zfp239!0.99!33.85!Zfp239;;chr2:77541432..77541474,-!p5@Zfp385b!0.99!8.84!Zfp385b;;chr7:91558392..91558434,-!p1@Arnt2!0.98!24.12!Arnt2;;chr12:72149325..72149343,+!p2@Arid4a!0.98!11.98!Arid4a;;chr14:122874619..122874634,+!p1@Zic2!0.97!8.24!Zic2;;chr2:163030164..163030178,+!p6@Tox2!0.97!8.24!Tox2;;chr14:19071466..19071550,-!p1@Nr1d2!0.96!57.52!Nr1d2;;chr6:145813905..145813932,-!p2@Bhlhe41!0.96!15.73!Bhlhe41;;chr1:19199236..19199258,+!p1@Tfap2b!0.96!8.09!Tfap2b;;chr5:28492230..28492257,+!p1@En2!0.95!7.94!En2;;chr16:91225654..91225671,+!p2@Olig2!0.95!7.94!Olig2;;chr11:90252071..90252093,-!p7@Hlf!0.95!7.94!Hlf;;chr14:34791937..34791977,-!p1@Zfp488!0.95!7.94!Zfp488;;chr4:22415443..22415506,-!p1@Pou3f2!0.95!7.94!Pou3f2;;chr3:34548909..34548927,+!p1@Sox2!0.94!13.33!Sox2;;chr3:95032197..95032208,-!p3@Mllt11!0.94!9.74!Mllt11;;chr15:103164702..103164778,-!p3@Zfp385a!0.94!9.14!Zfp385a;;chr2:181501710..181501742,+!p2@Myt1!0.94!7.79!Myt1;;chrX:70656436..70656464,+!p1@Zfp92!0.94!7.79!Zfp92;;chr2:127347094..127347111,-!p2@Kcnip3!0.93!12.58!Kcnip3;;chr4:154335024..154335039,+!p1@Hes5!0.93!9.14!Hes5;;chr2:151907546..151907561,+!p1@Scrt2!0.93!7.49!Scrt2;;chr2:25562263..25562314,+!p2@Bmyc!0.92!29.81!Bmyc;;chr6:145814003..145814056,-!p1@Bhlhe41!0.92!21.87!Bhlhe41;;chr11:116196664..116196679,-!p1@Foxj1!0.92!11.53!Foxj1;;chr2:28771380..28771413,-!p2@Barhl1!0.92!7.34!Barhl1;;chr3:95032558..95032641,-!p2@Mllt11!0.91!41.64!Mllt11;;chr6:134780163..134780197,+!p2@Crebl2!0.91!17.08!Crebl2;;chr8:12395892..12395919,+!p4@Sox1!0.91!7.19!Sox1;;chr2:115890294..115890334,-!p9@Meis2!0.90!9.74!Meis2;;chr11:90250944..90250982,-!p2@Hlf!0.89!11.53!Hlf;;chr7:91558472..91558512,-!p2@Arnt2!0.87!9.44!Arnt2;;chr19:19185697..19185711,-!p2@Rorb!0.87!8.24!Rorb;;chr19:10315179..10315241,-!p1@Gm98!0.86!69.35!Gm98;;chr1:140743964..140743976,-!p3@Lhx9!0.86!6.29!Lhx9;;chr7:52960555..52960662,+!p1@Dbp!0.85!54.97!Dbp;;chr15:81633165..81633188,+!p2@Tef!0.85!53.48!Tef;;chr15:103170561..103170572,-!p4@Zfp385a!0.85!9.14!Zfp385a;;chr8:87297878..87297935,-!p3@Nfix!0.84!13.63!Nfix;;chr2:181501745..181501778,+!p1@Myt1!0.84!5.99!Myt1;;chr17:86020156..86020183,+!p1@Six3!0.84!5.99!Six3;;chr3:66785181..66785199,-!p2@Shox2!0.84!5.99!Shox2;;chr4:22415290..22415307,-!p2@Pou3f2!0.84!5.99!Pou3f2;;chr19:55969687..55969714,+!p16@Tcf7l2!0.84!5.84!Tcf7l2;;chr2:65768149..65768173,+!p4@Csrnp3!0.84!5.84!Csrnp3;;chr1:140739042..140739054,-!p2@Lhx9!0.83!5.69!Lhx9;;chr11:98636575..98636607,-!p2@Nr1d1!0.82!21.72!Nr1d1;;chr4:124334894..124334899,+!p1@Pou3f1!0.82!7.49!Pou3f1;;chr17:27693525..27693538,+!p5@Hmga1!0.81!19.77!Hmga1;;chr14:52935860..52935874,-!p3@Sall2!0.81!8.24!Sall2;;chr1:19202352..19202354,+!p2@Tfap2b!0.81!5.39!Tfap2b;;chr19:26681865..26681900,+!p6@Smarca2!0.80!16.33!Smarca2;;chr8:112603658..112603674,+!p2@Zfp612!0.80!10.19!Zfp612;;chr15:95485240..95485257,-!p1@Dbx2!0.80!5.24!Dbx2;;chr17:86020510..86020589,+!p3@Six3!0.80!5.24!Six3;;chr11:90252108..90252134,-!p6@Hlf!0.80!5.24!Hlf;;chr19:55968937..55968951,+!p21@Tcf7l2!0.80!5.24!Tcf7l2;;chr2:168427120..168427138,-!p4@Nfatc2!0.80!5.24!Nfatc2;;chr7:17200307..17200370,-!p2@Grlf1!0.79!40.89!Grlf1;;chr9:68501522..68501538,+!p4@Rora!0.79!10.19!Rora;;chr10:80893711..80893784,-!p3@Nfic!0.78!28.31!Nfic;;chr7:30092993..30093076,+!p1@Dpf1!0.78!9.14!Dpf1;;chr18:36441100..36441113,+!p3@Pura!0.78!5.99!Pura;;chr2:151907338..151907360,+!p2@Scrt2!0.78!5.09!Scrt2;;chr11:84339016..84339044,-!p1@Lhx1!0.78!5.09!Lhx1;;chr11:70501419..70501483,-!p1@Camta2,p1@LOC100048818!0.77!56.17!Camta2;;chr7:38554763..38554780,-!p1@Zfp536!0.77!9.29!Zfp536;;chr19:23216132..23216157,+!p3@Klf9!0.77!7.94!Klf9;;chr19:55972767..55972779,+!p20@Tcf7l2!0.77!4.94!Tcf7l2;;chr2:81893535..81893548,+!p1@Zfp804a!0.77!4.94!Zfp804a;;chr8:79423144..79423178,+!p3@Nr3c2!0.76!6.89!Nr3c2;;chr3:101814061..101814094,+!p1@Nhlh2!0.76!4.79!Nhlh2;;chrX:55283799..55283813,+!p1@Zic3!0.76!4.79!Zic3;;chr5:125342568..125342602,+!p2@Zfp664!0.75!7.94!Zfp664;;chr13:72101178..72101203,-!p1@Irx1!0.75!7.49!Irx1;;chr8:79423672..79423727,+!p2@Nr3c2!0.75!5.99!Nr3c2;;chr14:118636238..118636257,-!p2@Sox21!0.75!4.64!Sox21;;chr11:21901608..21901634,-!p1@Otx1!0.75!4.64!Otx1;;chr19:55970060..55970071,+!p25@Tcf7l2!0.75!4.64!Tcf7l2;;chr7:130644017..130644092,-!p1@Zkscan2!0.74!9.29!Zkscan2;;chr9:106356278..106356292,+!p3@Pcbp4!0.74!8.09!Pcbp4;;chr13:72766279..72766296,+!p2@Irx2!0.74!7.04!Irx2;;chr9:20385868..20385902,+!p3@Zfp846!0.74!6.74!Zfp846;;chr6:145813964..145813994,-!p3@Bhlhe41!0.74!5.84!Bhlhe41;;chr8:12395874..12395885,+!p2@Sox1!0.74!4.49!Sox1;;chr17:86020115..86020128,+!p2@Six3!0.74!4.49!Six3;;chr15:82742573..82742620,-!p2@Tcf20!0.74!4.49!Tcf20;;chr12:30220074..30220102,+!p3@Myt1l!0.74!4.49!Myt1l;;chr13:44936077..44936096,+!p9@Jarid2!0.74!4.49!Jarid2;;chr1:122498955..122498968,+!p1@En1!0.74!4.49!En1;;chr1:189821714..189821761,+!p1@Esrrg!0.73!8.54!Esrrg;;chr15:81633139..81633152,+!p4@Tef!0.73!7.79!Tef;;chr14:118636214..118636235,-!p1@Sox21!0.73!5.39!Sox21;;chrX:137077151..137077227,-!p2@Tsc22d3!0.72!32.95!Tsc22d3;;chr3:130813200..130813252,+!p1@Lef1!0.72!21.27!Lef1;;chr3:95032184..95032195,-!p4@Mllt11!0.72!5.39!Mllt11;;chr2:65683842..65683856,+!p3@Csrnp3!0.72!4.19!Csrnp3;;chr8:112603610..112603656,+!p1@Zfp612!0.71!21.12!Zfp612;;chr4:149862477..149862553,+!p3@Rere!0.71!16.03!Rere;;chr3:54559496..54559511,+!p1@Smad9!0.71!10.04!Smad9;;chr4:13670626..13670657,+!p5@Runx1t1!0.71!6.74!Runx1t1;;chr13:72101141..72101158,-!p3@Irx1!0.71!5.39!Irx1;;chr14:52935876..52935928,-!p1@Sall2!0.70!36.85!Sall2;;chr10:30522690..30522752,-!p2@Ncoa7!0.70!27.41!Ncoa7;;chrX:66613481..66613562,+!p1@Aff2!0.70!19.47!Aff2;;chr2:38206580..38206600,+!p2@Lhx2!0.70!5.09!Lhx2;;chr2:38206744..38206766,+!p1@Lhx2!0.70!4.94!Lhx2;;chr10:67375223..67375240,-!p4@Zfp365!0.70!4.64!Zfp365;;chr11:96685487..96685512,-!p7@Nfe2l1!0.70!4.04!Nfe2l1;;chr3:66785201..66785226,-!p3@Shox2!0.70!4.04!Shox2;;chr9:96632719..96632745,-!p7@Zbtb38!0.70!4.04!Zbtb38;;chr3:5218516..5218544,+!p2@Zfhx4!0.69!6.14!Zfhx4;;chr19:23215554..23215567,+!p5@Klf9!0.69!5.54!Klf9;;chr11:90251852..90251855,-!p4@Hlf!0.69!4.94!Hlf;;chrX:108009734..108009752,+!p2@Pou3f4!0.69!3.89!Pou3f4;;chr7:52960888..52960902,+!p7@Dbp!0.69!3.89!Dbp;;chr11:98603119..98603130,+!p2@Thra!0.68!37.15!Thra;;chrX:92906980..92907024,+!p2@Zc3h12b!0.68!10.64!Zc3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9690474..9690493,-!p3@Mybl1!0.22!1.50!Mybl1;;chr5:24107903..24107917,-!p6@Smarcd3!0.22!1.05!Smarcd3;;chr7:123177377..123177409,-!p7@Sox6!0.22!1.05!Sox6;;chr18:36953572..36953591,+!p1@Zmat2!0.21!84.93!Zmat2;;chr11:53164236..53164284,+!p1@Aff4!0.21!42.09!Aff4;;chr5:143996822..143996930,+!p1@Zfp12!0.21!29.36!Zfp12;;chr8:74474953..74475029,+!p1@Zfp961!0.21!23.52!Zfp961;;chr5:34163344..34163484,+!p1@Whsc1!0.21!22.32!Whsc1;;chr2:160698721..160698745,-!p1@Zhx3!0.21!20.37!Zhx3;;chr11:97524509..97524595,+!p1@Mllt6!0.21!16.78!Mllt6;;chr8:34496298..34496366,+!p1@Purg!0.21!11.83!Purg;;chr5:36826883..36826951,-!p1@Tada2b!0.21!10.34!Tada2b;;chr3:32409487..32409563,+!p1@Zfp639!0.21!10.04!Zfp639;;chr2:154439063..154439105,+!p1@Zfp341!0.21!8.39!Zfp341;;chr2:181022721..181022746,-!p2@Gmeb2!0.21!7.19!Gmeb2;;chr11:98603160..98603171,+!p3@Thra!0.21!6.14!Thra;;chrX:53599567..53599592,+!p1@Zfp449!0.21!5.39!Zfp449;;chr7:17647736..17647772,-!p1@Hif3a!0.21!4.49!Hif3a;;chr3:87945895..87945946,+!p2@Mef2d!0.21!3.89!Mef2d;;chr7:30857891..30857943,-!p1@LOC100505067,p3@Zfp82!0.21!3.15!Zfp82;;chr8:92872242..92872285,-!p1@Tox3!0.21!3.00!Tox3;;chr7:50817629..50817652,+!p1@LOC100505180,p1@Zfp658!0.21!2.85!Zfp658;;chr16:42907656..42907675,+!p10@Zbtb20!0.21!2.40!Zbtb20;;chr2:48805633..48805648,+!p5@Mbd5!0.21!2.10!Mbd5;;chr18:75527210..75527215,+!p4@Smad7!0.21!1.65!Smad7;;chr9:96619968..96619983,-!p6@Zbtb38!0.21!1.65!Zbtb38;;chr15:50721640..50721654,-!p7@Trps1!0.21!1.50!Trps1;;chr7:91558631..91558652,-!p3@Arnt2!0.21!1.35!Arnt2;;chr15:40486540..40486550,+!p6@Zfpm2!0.21!1.20!Zfpm2;;chr16:43364215..43364252,+!p14@Zbtb20!0.21!1.05!Zbtb20;;chr2:165213716..165213732,-!p2@Zfp334!0.21!1.05!Zfp334;;chr8:94325446..94325459,-!p8@Irx3!0.21!0.75!Irx3;;chr5:125659525..125659599,-!p1@Ncor2!0.20!87.03!Ncor2;;chr13:83663902..83663927,+!p1@Mef2c!0.20!34.15!Mef2c;;chr19:47125313..47125405,-!p1@Pcgf6!0.20!30.56!Pcgf6;;chr13:67627072..67627115,-!p1@Zfp58!0.20!26.51!Zfp87;;chr7:30601080..30601172,+!p1@Zfp790!0.20!17.08!Zfp790;;chr17:84105551..84105600,+!p1@Mta3!0.20!15.43!Mta3;;chr12:39506873..39506913,+!p1@Etv1!0.20!14.23!Etv1;;chr5:146041333..146041379,+!p@chr5:146041333..146041379,+!0.20!10.49!Zfp498;;chr7:30739068..30739108,-!p1@Zfp74!0.20!10.19!Zfp74;;chr3:54611674..54611690,-!p2@Rfxap!0.20!9.89!Rfxap;;chrX:132420399..132420436,+!p1@Bhlhb9!0.20!7.94!Bhlhb9;;chr9:20297135..20297154,-!p2@Zfp426!0.20!4.49!Zfp426;;chr11:74644716..74644780,+!p2@Mnt!0.20!3.59!Mnt;;chr8:111227641..111227672,+!p@chr8:111227641..111227672,+!0.20!3.00!Zfhx3;;chr15:102034510..102034549,+!p4@Zfp740!0.20!2.70!Zfp740;;chr11:58136860..58136874,-!p2@Zfp672!0.20!2.25!Zfp672;;chr7:74517748..74517757,-!p3@Mef2a!0.20!2.10!Mef2a;;chr7:77511311..77511352,-!p4@Nr2f2!0.20!2.10!Nr2f2;;chr9:122812356..122812381,+!p@chr9:122812356..122812381,+!0.20!1.95!Gm8008;;chr17:34729160..34729171,+!p3@Pbx2!0.20!1.95!Pbx2;;chr7:25862363..25862382,+!p2@Zfp574!0.20!1.80!Zfp574;;chr11:121380594..121380609,-!p2@Zfp750!0.20!1.65!Zfp750;;chr11:98789140..98789168,+!p5@Rara!0.20!1.50!Rara;;chr5:31262699..31262712,-!p2@Preb!0.20!1.50!Preb;;chr7:17200403..17200416,-!p5@Grlf1!0.20!1.50!Grlf1;;chr1:64167765..64167777,-!p6@Klf7!0.20!1.20!Klf7;;chr2:163028888..163028905,+!p3@Tox2!0.20!0.90!Tox2;;chr6:14851344..14851364,+!p6@Foxp2!0.20!0.90!Foxp2;;chr2:77654936..77654988,-!p4@Zfp385b!0.20!0.90!Zfp385b;;chr1:170362027..170362036,-!p15@Pbx1!0.20!0.75!Pbx1;;chr14:18493480..18493494,+!p2@Thrb!0.20!0.75!Thrb;;chr12:39510042..39510069,+!p8@Etv1!0.20!0.60!Etv1;;chr13:44936055..44936066,+!p20@Jarid2!0.20!0.60!Jarid2;;chr1:91827728..91827743,-!p2@Gbx2!0.20!0.60!Gbx2;;chr1:167865149..167865167,-!p3@Pou2f1!0.20!0.60!Pou2f1;;chr2:151907368..151907379,+!p8@Scrt2!0.20!0.60!Scrt2;;chr19:59534052..59534083,+!p8@Emx2!0.20!0.60!Emx2;;chr1:19202185..19202187,+!p9@Tfap2b!0.20!0.60!Tfap2b;;chr1:191993385..191993405,-!p3@Prox1!0.20!0.60!Prox1;;chr19:55968962..55968965,+!p58@Tcf7l2!0.20!0.60!Tcf7l2;;chr1:19093112..19093124,+!p1@Tfap2d!0.20!0.60!Tfap2d;;chr1:169528433..169528456,+!p10@Rxrg!0.20!0.60!Rxrg;;chr19:55969998..55970001,+!p40@Tcf7l2!0.20!0.60!Tcf7l2;; | |expression_enrichment_score=chr16:91270004..91270023,+!p1@Olig1!2.26!204.46!Olig1;;chr5:138199361..138199441,+!p2@Tsc22d4!1.99!175.55!Tsc22d4;;chr17:48015839..48015915,-!p3@Foxp4!1.72!60.22!Foxp4;;chr12:30219426..30219506,+!p2@Myt1l!1.69!48.53!Myt1l;;chr16:91225808..91225824,+!p1@Olig2!1.66!45.24!Olig2;;chr2:163051181..163051205,+!p2@Tox2!1.66!44.79!Tox2;;chr7:116154364..116154444,+!p1@Tub!1.64!72.50!Tub;;chrX:34442872..34442899,-!p1@Nkrf!1.56!44.94!Nkrf;;chr4:58956447..58956510,+!p1@Zkscan16!1.53!70.55!Zkscan16;;chr2:65683890..65683907,+!p1@Csrnp3!1.53!62.01!Csrnp3;;chr15:76353005..76353021,-!p2@Scrt1!1.52!32.35!Scrt1;;chr19:19185671..19185693,-!p1@Rorb!1.49!69.95!Rorb;;chr18:36441119..36441158,+!p2@Pura!1.46!65.76!Pura;;chr10:67375146..67375208,-!p2@Zfp365!1.45!40.59!Zfp365;;chr15:76352434..76352488,-!p4@Scrt1!1.43!25.91!Scrt1;;chr4:150482563..150482655,-!p2@Camta1!1.42!87.78!Camta1;;chr1:140739014..140739032,-!p1@Lhx9!1.42!31.61!Lhx9;;chr19:55972441..55972456,+!p18@Tcf7l2!1.41!24.42!Tcf7l2;;chr7:148008023..148008092,-!p1@Zfp941!1.40!57.07!Zfp941;;chr14:49287186..49287225,-!p1@Otx2!1.40!24.27!Otx2;;chr2:127347067..127347093,-!p1@Kcnip3!1.39!38.95!Kcnip3;;chr8:24780125..24780143,+!p1@Zmat4!1.37!31.91!Zmat4;;chr15:76352677..76352737,-!p3@Scrt1!1.34!21.12!Scrt1;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.33!25.91!Pou3f3;;chr4:150513630..150513686,-!p4@Camta1!1.33!23.22!Camta1;;chr3:95032091..95032183,-!p1@Mllt11!1.32!166.57!Mllt11;;chr17:25707623..25707639,-!p1@Sox8!1.31!81.34!Sox8;;chr2:168427068..168427115,-!p3@Nfatc2!1.30!19.02!Nfatc2;;chr7:146768691..146768707,-!p1@Nkx6-2!1.29!18.72!Nkx6-2;;chr10:67375368..67375433,-!p1@Zfp365!1.28!31.61!Zfp365;;chr8:107793688..107793736,+!p1@Hsf4!1.28!23.52!Hsf4;;chr19:55972403..55972421,+!p22@Tcf7l2!1.27!17.53!Tcf7l2;;chr12:54349410..54349461,+!p1@Npas3!1.26!20.82!Npas3;;chr15:78994907..78994926,-!p1@Sox10!1.23!40.44!Sox10;;chr9:99776566..99776612,-!p1@Sox14!1.23!16.18!Sox14;;chr1:6477388..6477419,+!p3@St18!1.21!15.28!St18;;chr2:163030219..163030258,+!p5@Tox2!1.20!14.83!Tox2;;chr10:84218800..84218829,+!p2@Rfx4!1.20!14.83!Rfx4;;chrX:108009761..108009788,+!p1@Pou3f4!1.19!14.53!Pou3f4;;chr2:127347042..127347058,-!p3@Kcnip3!1.17!13.63!Kcnip3;;chr16:91270091..91270143,+!p2@Olig1!1.15!13.18!Olig1;;chrX:34442842..34442866,-!p3@Nkrf!1.15!13.03!Nkrf;;chr13:72766250..72766273,+!p1@Irx2!1.13!19.32!Irx2;;chr19:55969923..55969944,+!p6@Tcf7l2!1.13!12.58!Tcf7l2;;chr2:163030186..163030204,+!p4@Tox2!1.13!12.43!Tox2;;chr11:90252223..90252240,-!p1@Hlf!1.12!100.66!Hlf;;chr15:103170533..103170556,-!p1@Zfp385a!1.12!45.54!Zfp385a;;chr14:104867201..104867258,-!p1@Pou4f1!1.10!16.33!Pou4f1;;chr5:122499831..122499891,-!p1@Cux2!1.09!17.38!Cux2;;chr2:162769220..162769252,+!p1@L3mbtl1!1.08!10.93!L3mbtl1;;chr11:96685444..96685473,-!p5@Nfe2l1!1.07!10.64!Nfe2l1;;chr10:84218895..84218909,+!p1@Rfx4!1.07!10.64!Rfx4;;chr3:95032515..95032553,-!p5@Mllt11!1.05!12.28!Mllt11;;chr19:55968967..55968991,+!p7@Tcf7l2!1.05!10.19!Tcf7l2;;chr9:91260616..91260653,-!p2@Zic1!1.04!10.04!Zic1;;chr11:98636531..98636559,-!p1@Nr1d1!1.03!55.57!Nr1d1;;chr9:91260594..91260612,-!p1@Zic1!1.03!9.74!Zic1;;chr15:103170516..103170531,-!p2@Zfp385a!1.02!22.77!Zfp385a;;chr13:44936126..44936164,+!p6@Jarid2!1.02!11.08!Jarid2;;chr8:12395603..12395621,+!p1@Sox1!1.02!9.59!Sox1;;chr3:34548946..34548972,+!p2@Sox2!1.01!10.19!Sox2;;chr12:30213247..30213333,+!p1@Myt1l!1.01!9.29!Myt1l;;chr19:55969946..55969973,+!p8@Tcf7l2!1.01!9.29!Tcf7l2;;chr2:65768174..65768247,+!p2@Csrnp3!1.01!9.14!Csrnp3;;chr4:150482353..150482386,-!p6@Camta1!1.01!9.14!Camta1;;chr3:95032213..95032226,-!p6@Mllt11!1.00!10.93!Mllt11;;chrX:137083127..137083138,-!p9@Tsc22d3!1.00!8.99!Tsc22d3;;chr6:117813087..117813121,+!p1@Zfp239!0.99!33.85!Zfp239;;chr2:77541432..77541474,-!p5@Zfp385b!0.99!8.84!Zfp385b;;chr7:91558392..91558434,-!p1@Arnt2!0.98!24.12!Arnt2;;chr12:72149325..72149343,+!p2@Arid4a!0.98!11.98!Arid4a;;chr14:122874619..122874634,+!p1@Zic2!0.97!8.24!Zic2;;chr2:163030164..163030178,+!p6@Tox2!0.97!8.24!Tox2;;chr14:19071466..19071550,-!p1@Nr1d2!0.96!57.52!Nr1d2;;chr6:145813905..145813932,-!p2@Bhlhe41!0.96!15.73!Bhlhe41;;chr1:19199236..19199258,+!p1@Tfap2b!0.96!8.09!Tfap2b;;chr5:28492230..28492257,+!p1@En2!0.95!7.94!En2;;chr16:91225654..91225671,+!p2@Olig2!0.95!7.94!Olig2;;chr11:90252071..90252093,-!p7@Hlf!0.95!7.94!Hlf;;chr14:34791937..34791977,-!p1@Zfp488!0.95!7.94!Zfp488;;chr4:22415443..22415506,-!p1@Pou3f2!0.95!7.94!Pou3f2;;chr3:34548909..34548927,+!p1@Sox2!0.94!13.33!Sox2;;chr3:95032197..95032208,-!p3@Mllt11!0.94!9.74!Mllt11;;chr15:103164702..103164778,-!p3@Zfp385a!0.94!9.14!Zfp385a;;chr2:181501710..181501742,+!p2@Myt1!0.94!7.79!Myt1;;chrX:70656436..70656464,+!p1@Zfp92!0.94!7.79!Zfp92;;chr2:127347094..127347111,-!p2@Kcnip3!0.93!12.58!Kcnip3;;chr4:154335024..154335039,+!p1@Hes5!0.93!9.14!Hes5;;chr2:151907546..151907561,+!p1@Scrt2!0.93!7.49!Scrt2;;chr2:25562263..25562314,+!p2@Bmyc!0.92!29.81!Bmyc;;chr6:145814003..145814056,-!p1@Bhlhe41!0.92!21.87!Bhlhe41;;chr11:116196664..116196679,-!p1@Foxj1!0.92!11.53!Foxj1;;chr2:28771380..28771413,-!p2@Barhl1!0.92!7.34!Barhl1;;chr3:95032558..95032641,-!p2@Mllt11!0.91!41.64!Mllt11;;chr6:134780163..134780197,+!p2@Crebl2!0.91!17.08!Crebl2;;chr8:12395892..12395919,+!p4@Sox1!0.91!7.19!Sox1;;chr2:115890294..115890334,-!p9@Meis2!0.90!9.74!Meis2;;chr11:90250944..90250982,-!p2@Hlf!0.89!11.53!Hlf;;chr7:91558472..91558512,-!p2@Arnt2!0.87!9.44!Arnt2;;chr19:19185697..19185711,-!p2@Rorb!0.87!8.24!Rorb;;chr19:10315179..10315241,-!p1@Gm98!0.86!69.35!Gm98;;chr1:140743964..140743976,-!p3@Lhx9!0.86!6.29!Lhx9;;chr7:52960555..52960662,+!p1@Dbp!0.85!54.97!Dbp;;chr15:81633165..81633188,+!p2@Tef!0.85!53.48!Tef;;chr15:103170561..103170572,-!p4@Zfp385a!0.85!9.14!Zfp385a;;chr8:87297878..87297935,-!p3@Nfix!0.84!13.63!Nfix;;chr2:181501745..181501778,+!p1@Myt1!0.84!5.99!Myt1;;chr17:86020156..86020183,+!p1@Six3!0.84!5.99!Six3;;chr3:66785181..66785199,-!p2@Shox2!0.84!5.99!Shox2;;chr4:22415290..22415307,-!p2@Pou3f2!0.84!5.99!Pou3f2;;chr19:55969687..55969714,+!p16@Tcf7l2!0.84!5.84!Tcf7l2;;chr2:65768149..65768173,+!p4@Csrnp3!0.84!5.84!Csrnp3;;chr1:140739042..140739054,-!p2@Lhx9!0.83!5.69!Lhx9;;chr11:98636575..98636607,-!p2@Nr1d1!0.82!21.72!Nr1d1;;chr4:124334894..124334899,+!p1@Pou3f1!0.82!7.49!Pou3f1;;chr17:27693525..27693538,+!p5@Hmga1!0.81!19.77!Hmga1;;chr14:52935860..52935874,-!p3@Sall2!0.81!8.24!Sall2;;chr1:19202352..19202354,+!p2@Tfap2b!0.81!5.39!Tfap2b;;chr19:26681865..26681900,+!p6@Smarca2!0.80!16.33!Smarca2;;chr8:112603658..112603674,+!p2@Zfp612!0.80!10.19!Zfp612;;chr15:95485240..95485257,-!p1@Dbx2!0.80!5.24!Dbx2;;chr17:86020510..86020589,+!p3@Six3!0.80!5.24!Six3;;chr11:90252108..90252134,-!p6@Hlf!0.80!5.24!Hlf;;chr19:55968937..55968951,+!p21@Tcf7l2!0.80!5.24!Tcf7l2;;chr2:168427120..168427138,-!p4@Nfatc2!0.80!5.24!Nfatc2;;chr7:17200307..17200370,-!p2@Grlf1!0.79!40.89!Grlf1;;chr9:68501522..68501538,+!p4@Rora!0.79!10.19!Rora;;chr10:80893711..80893784,-!p3@Nfic!0.78!28.31!Nfic;;chr7:30092993..30093076,+!p1@Dpf1!0.78!9.14!Dpf1;;chr18:36441100..36441113,+!p3@Pura!0.78!5.99!Pura;;chr2:151907338..151907360,+!p2@Scrt2!0.78!5.09!Scrt2;;chr11:84339016..84339044,-!p1@Lhx1!0.78!5.09!Lhx1;;chr11:70501419..70501483,-!p1@Camta2,p1@LOC100048818!0.77!56.17!Camta2;;chr7:38554763..38554780,-!p1@Zfp536!0.77!9.29!Zfp536;;chr19:23216132..23216157,+!p3@Klf9!0.77!7.94!Klf9;;chr19:55972767..55972779,+!p20@Tcf7l2!0.77!4.94!Tcf7l2;;chr2:81893535..81893548,+!p1@Zfp804a!0.77!4.94!Zfp804a;;chr8:79423144..79423178,+!p3@Nr3c2!0.76!6.89!Nr3c2;;chr3:101814061..101814094,+!p1@Nhlh2!0.76!4.79!Nhlh2;;chrX:55283799..55283813,+!p1@Zic3!0.76!4.79!Zic3;;chr5:125342568..125342602,+!p2@Zfp664!0.75!7.94!Zfp664;;chr13:72101178..72101203,-!p1@Irx1!0.75!7.49!Irx1;;chr8:79423672..79423727,+!p2@Nr3c2!0.75!5.99!Nr3c2;;chr14:118636238..118636257,-!p2@Sox21!0.75!4.64!Sox21;;chr11:21901608..21901634,-!p1@Otx1!0.75!4.64!Otx1;;chr19:55970060..55970071,+!p25@Tcf7l2!0.75!4.64!Tcf7l2;;chr7:130644017..130644092,-!p1@Zkscan2!0.74!9.29!Zkscan2;;chr9:106356278..106356292,+!p3@Pcbp4!0.74!8.09!Pcbp4;;chr13:72766279..72766296,+!p2@Irx2!0.74!7.04!Irx2;;chr9:20385868..20385902,+!p3@Zfp846!0.74!6.74!Zfp846;;chr6:145813964..145813994,-!p3@Bhlhe41!0.74!5.84!Bhlhe41;;chr8:12395874..12395885,+!p2@Sox1!0.74!4.49!Sox1;;chr17:86020115..86020128,+!p2@Six3!0.74!4.49!Six3;;chr15:82742573..82742620,-!p2@Tcf20!0.74!4.49!Tcf20;;chr12:30220074..30220102,+!p3@Myt1l!0.74!4.49!Myt1l;;chr13:44936077..44936096,+!p9@Jarid2!0.74!4.49!Jarid2;;chr1:122498955..122498968,+!p1@En1!0.74!4.49!En1;;chr1:189821714..189821761,+!p1@Esrrg!0.73!8.54!Esrrg;;chr15:81633139..81633152,+!p4@Tef!0.73!7.79!Tef;;chr14:118636214..118636235,-!p1@Sox21!0.73!5.39!Sox21;;chrX:137077151..137077227,-!p2@Tsc22d3!0.72!32.95!Tsc22d3;;chr3:130813200..130813252,+!p1@Lef1!0.72!21.27!Lef1;;chr3:95032184..95032195,-!p4@Mllt11!0.72!5.39!Mllt11;;chr2:65683842..65683856,+!p3@Csrnp3!0.72!4.19!Csrnp3;;chr8:112603610..112603656,+!p1@Zfp612!0.71!21.12!Zfp612;;chr4:149862477..149862553,+!p3@Rere!0.71!16.03!Rere;;chr3:54559496..54559511,+!p1@Smad9!0.71!10.04!Smad9;;chr4:13670626..13670657,+!p5@Runx1t1!0.71!6.74!Runx1t1;;chr13:72101141..72101158,-!p3@Irx1!0.71!5.39!Irx1;;chr14:52935876..52935928,-!p1@Sall2!0.70!36.85!Sall2;;chr10:30522690..30522752,-!p2@Ncoa7!0.70!27.41!Ncoa7;;chrX:66613481..66613562,+!p1@Aff2!0.70!19.47!Aff2;;chr2:38206580..38206600,+!p2@Lhx2!0.70!5.09!Lhx2;;chr2:38206744..38206766,+!p1@Lhx2!0.70!4.94!Lhx2;;chr10:67375223..67375240,-!p4@Zfp365!0.70!4.64!Zfp365;;chr11:96685487..96685512,-!p7@Nfe2l1!0.70!4.04!Nfe2l1;;chr3:66785201..66785226,-!p3@Shox2!0.70!4.04!Shox2;;chr9:96632719..96632745,-!p7@Zbtb38!0.70!4.04!Zbtb38;;chr3:5218516..5218544,+!p2@Zfhx4!0.69!6.14!Zfhx4;;chr19:23215554..23215567,+!p5@Klf9!0.69!5.54!Klf9;;chr11:90251852..90251855,-!p4@Hlf!0.69!4.94!Hlf;;chrX:108009734..108009752,+!p2@Pou3f4!0.69!3.89!Pou3f4;;chr7:52960888..52960902,+!p7@Dbp!0.69!3.89!Dbp;;chr11:98603119..98603130,+!p2@Thra!0.68!37.15!Thra;;chrX:92906980..92907024,+!p2@Zc3h12b!0.68!10.64!Zc3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| ||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006777,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 36: | Line 42: | ||
|has_quality= | |has_quality= | ||
|id=FF:16-22A4 | |id=FF:16-22A4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011283 | ||
|is_obsolete= | |||
|library_id=CNhs10501 | |||
|library_id_phase_based=2:CNhs10501 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;16 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;16 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/corpora%2520quadrigemina%252c%2520adult.CNhs10501.16-22A4.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/corpora%2520quadrigemina%252c%2520adult.CNhs10501.16-22A4.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/corpora%2520quadrigemina%252c%2520adult.CNhs10501.16-22A4.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/corpora%2520quadrigemina%252c%2520adult.CNhs10501.16-22A4.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/corpora%2520quadrigemina%252c%2520adult.CNhs10501.16-22A4.mm9.nobarcode.rdna.fa.gz | |||
|name=corpora quadrigemina, adult | |name=corpora quadrigemina, adult | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10501,LSID648,release008,COMPLETED | |profile_hcage=CNhs10501,LSID648,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.0532503644714875,0,0,0,0,0,-0.0014126706784584,0,0.0541042647168238,0,0,-0.0843392403965415,0,0,0,0,0.0303093843382358,0,0.0119992618872562,0,0,0,0,0,0.0606187686764715,0,0,0,0,0,0,0,-0.216330870700297,0,0,0,0,0.0465269389694287,0.0329387489569705,0.112517203338526,-0.0789858111573438,0.888219992473792,0.555690169062648,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0,0,0,0.0236693736272396,0.0398190537556165,-0.0321842802429986,0.557422433107953,0.0983479648072969,0,0.0262048012778499,0.135019174158258,0.0590140410331578,0,0,0.084886790756001,0.144058279896087,0.00569025171595694,0.0349718516247984,0,0,0,0,0,0,-0.0687933291582405,-0.259497577897227,-0.046467602012272,0.0334225037537722,0,0.805668224242234,0,0 | |||
|rna_box=22 | |rna_box=22 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 57: | Line 76: | ||
|rna_weight_ug= | |rna_weight_ug= | ||
|sample_age= | |sample_age= | ||
|sample_category=developmental | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 76: | Line 96: | ||
|sample_tissue=corpora quadrigemina | |sample_tissue=corpora quadrigemina | ||
|top_motifs=REST:2.88956309642;MTF1:2.72941553035;NHLH1,2:2.65248226527;MYFfamily:2.5660269684;ZBTB6:2.44915961449;ATF2:2.42307863097;POU6F1:2.34021761665;PRRX1,2:2.24107322422;AHR_ARNT_ARNT2:2.17384956094;ZFP161:2.09896772619;NFIL3:2.09743613932;PBX1:2.08200892849;EGR1..3:2.03072783011;POU3F1..4:2.03016607211;HIC1:2.01812031339;BREu{core}:2.01225680044;MED-1{core}:1.99866599104;CUX2:1.94758814972;TGIF1:1.93932295156;OCT4_SOX2{dimer}:1.92543898628;RBPJ:1.91998754836;TFAP2B:1.91042580946;SMAD1..7,9:1.87584908179;MAFB:1.83471034196;HAND1,2:1.8275579112;LMO2:1.7447322516;HBP1_HMGB_SSRP1_UBTF:1.72288740547;STAT1,3:1.71423907316;RORA:1.67429950086;PAX5:1.66103473287;SREBF1,2:1.645345645;PRDM1:1.63799723233;RFX1:1.63705308701;FOXD3:1.60564668813;MTE{core}:1.54137838564;NRF1:1.50466366482;GFI1B:1.48899355354;KLF4:1.48096307009;GTF2I:1.46388595521;JUN:1.46226004796;NFE2L2:1.45581610849;FOX{I1,J2}:1.31727166192;CREB1:1.31059870449;FOXN1:1.30906555647;ZNF143:1.30396807234;TFDP1:1.28630198367;DBP:1.27933024201;PAX6:1.27204177206;SOX2:1.20040140033;RFX2..5_RFXANK_RFXAP:1.15026444212;ATF5_CREB3:1.137678484;MZF1:1.08450991005;NANOG:1.08344791549;ZIC1..3:1.07913186092;FOXM1:1.07204216874;ZNF423:1.04100158515;VSX1,2:0.98601856828;ZEB1:0.963806735811;TFAP2{A,C}:0.963007581265;PATZ1:0.946061124624;EVI1:0.925190103741;PPARG:0.901175002467;NR3C1:0.859032067255;PAX4:0.83407849659;SOX{8,9,10}:0.828725575191;RREB1:0.826277899068;HSF1,2:0.796083594092;HES1:0.746581436784;SOX5:0.732485236281;MAZ:0.713880199234;LHX3,4:0.70421789597;ALX1:0.686830918334;GTF2A1,2:0.676847950635;NKX3-2:0.676081761758;ADNP_IRX_SIX_ZHX:0.623439853609;IKZF1:0.616978064044;HMGA1,2:0.579386249751;MYOD1:0.555266371315;ONECUT1,2:0.552139379566;ESRRA:0.535157028337;YY1:0.503589267221;NKX6-1,2:0.449834852359;FOXP3:0.41978451179;FOX{F1,F2,J1}:0.413233390481;PAX8:0.381883630662;PAX2:0.364698322368;LEF1_TCF7_TCF7L1,2:0.340930344035;TFAP4:0.306072605484;HIF1A:0.249341965988;AR:0.243144538826;SP1:0.240834284867;FOXP1:0.220557467819;NFE2:0.205322702774;POU5F1:0.187453325394;TEF:0.183441241958;BPTF:0.160149559465;NFE2L1:0.158080085962;UFEwm:0.129490305642;NR5A1,2:0.101335797348;AIRE:0.0948620470338;EP300:0.08207221185;HMX1:0.0758794942524;HOXA9_MEIS1:0.0704412303987;GATA4:0.0636077061472;EBF1:0.0538063578105;POU1F1:0.0479876521167;SPZ1:0.0223039706341;CDC5L:0.0107721042034;CRX:-0.0138913568169;MYBL2:-0.0510031733722;TLX1..3_NFIC{dimer}:-0.0562112378813;ZBTB16:-0.0600776038783;NKX2-2,8:-0.069142021077;PDX1:-0.0887806290727;FOXQ1:-0.0925430801146;TFCP2:-0.104121726617;GLI1..3:-0.113146612982;ATF6:-0.134674568509;NKX2-3_NKX2-5:-0.138638954754;HOX{A4,D4}:-0.151215070723;PAX1,9:-0.156766009071;ESR1:-0.159561682128;GZF1:-0.169318080042;FOSL2:-0.173978553672;CDX1,2,4:-0.186173792725;SOX17:-0.193483071939;NKX2-1,4:-0.195724939912;FOXA2:-0.217980153299;SNAI1..3:-0.23053129234;HOX{A5,B5}:-0.248262585011;TOPORS:-0.270388533662;ATF4:-0.270714169123;NFATC1..3:-0.291354800612;NANOG{mouse}:-0.299798579192;bHLH_family:-0.307629703647;T:-0.308199787625;EN1,2:-0.355996312332;TBX4,5:-0.3897477319;GCM1,2:-0.430493555601;MEF2{A,B,C,D}:-0.44270268599;HLF:-0.532778599245;NFY{A,B,C}:-0.57204673332;NKX3-1:-0.577286170275;ELK1,4_GABP{A,B1}:-0.586152524931;XCPE1{core}:-0.640864915081;STAT2,4,6:-0.643304299816;TAL1_TCF{3,4,12}:-0.647112293926;ZNF238:-0.666055466654;ZNF384:-0.674564220922;GATA6:-0.745911984923;MYB:-0.778187504636;FOX{D1,D2}:-0.779432855835;CEBPA,B_DDIT3:-0.834209481734;SPI1:-0.848779187541;HNF4A_NR2F1,2:-0.855270478999;ARID5B:-0.877399996177;IRF7:-0.903980006335;FOS_FOS{B,L1}_JUN{B,D}:-0.907979543517;POU2F1..3:-0.908028809978;ZNF148:-0.910478504107;TP53:-0.950604585635;RXR{A,B,G}:-0.951940489246;HNF1A:-0.957636319058;RUNX1..3:-0.986117286261;NR1H4:-1.01518459766;NFKB1_REL_RELA:-1.02760531262;IRF1,2:-1.02793102111;TEAD1:-1.03429419619;FOXL1:-1.08518428344;ETS1,2:-1.12027814853;BACH2:-1.12111964776;FOXO1,3,4:-1.23036767936;GFI1:-1.23078857056;ELF1,2,4:-1.2892859619;IKZF2:-1.32876564681;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.33722973353;PITX1..3:-1.37724257398;NFIX:-1.3901657519;ALX4:-1.41515326285;SPIB:-1.42279377179;RXRA_VDR{dimer}:-1.47543745078;TBP:-1.50943085136;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.66937132258;E2F1..5:-1.68859297887;STAT5{A,B}:-1.73886340853;DMAP1_NCOR{1,2}_SMARC:-1.809625306;SRF:-1.83498403494;NR6A1:-2.01007058795;TLX2:-2.20250260794 | |top_motifs=REST:2.88956309642;MTF1:2.72941553035;NHLH1,2:2.65248226527;MYFfamily:2.5660269684;ZBTB6:2.44915961449;ATF2:2.42307863097;POU6F1:2.34021761665;PRRX1,2:2.24107322422;AHR_ARNT_ARNT2:2.17384956094;ZFP161:2.09896772619;NFIL3:2.09743613932;PBX1:2.08200892849;EGR1..3:2.03072783011;POU3F1..4:2.03016607211;HIC1:2.01812031339;BREu{core}:2.01225680044;MED-1{core}:1.99866599104;CUX2:1.94758814972;TGIF1:1.93932295156;OCT4_SOX2{dimer}:1.92543898628;RBPJ:1.91998754836;TFAP2B:1.91042580946;SMAD1..7,9:1.87584908179;MAFB:1.83471034196;HAND1,2:1.8275579112;LMO2:1.7447322516;HBP1_HMGB_SSRP1_UBTF:1.72288740547;STAT1,3:1.71423907316;RORA:1.67429950086;PAX5:1.66103473287;SREBF1,2:1.645345645;PRDM1:1.63799723233;RFX1:1.63705308701;FOXD3:1.60564668813;MTE{core}:1.54137838564;NRF1:1.50466366482;GFI1B:1.48899355354;KLF4:1.48096307009;GTF2I:1.46388595521;JUN:1.46226004796;NFE2L2:1.45581610849;FOX{I1,J2}:1.31727166192;CREB1:1.31059870449;FOXN1:1.30906555647;ZNF143:1.30396807234;TFDP1:1.28630198367;DBP:1.27933024201;PAX6:1.27204177206;SOX2:1.20040140033;RFX2..5_RFXANK_RFXAP:1.15026444212;ATF5_CREB3:1.137678484;MZF1:1.08450991005;NANOG:1.08344791549;ZIC1..3:1.07913186092;FOXM1:1.07204216874;ZNF423:1.04100158515;VSX1,2:0.98601856828;ZEB1:0.963806735811;TFAP2{A,C}:0.963007581265;PATZ1:0.946061124624;EVI1:0.925190103741;PPARG:0.901175002467;NR3C1:0.859032067255;PAX4:0.83407849659;SOX{8,9,10}:0.828725575191;RREB1:0.826277899068;HSF1,2:0.796083594092;HES1:0.746581436784;SOX5:0.732485236281;MAZ:0.713880199234;LHX3,4:0.70421789597;ALX1:0.686830918334;GTF2A1,2:0.676847950635;NKX3-2:0.676081761758;ADNP_IRX_SIX_ZHX:0.623439853609;IKZF1:0.616978064044;HMGA1,2:0.579386249751;MYOD1:0.555266371315;ONECUT1,2:0.552139379566;ESRRA:0.535157028337;YY1:0.503589267221;NKX6-1,2:0.449834852359;FOXP3:0.41978451179;FOX{F1,F2,J1}:0.413233390481;PAX8:0.381883630662;PAX2:0.364698322368;LEF1_TCF7_TCF7L1,2:0.340930344035;TFAP4:0.306072605484;HIF1A:0.249341965988;AR:0.243144538826;SP1:0.240834284867;FOXP1:0.220557467819;NFE2:0.205322702774;POU5F1:0.187453325394;TEF:0.183441241958;BPTF:0.160149559465;NFE2L1:0.158080085962;UFEwm:0.129490305642;NR5A1,2:0.101335797348;AIRE:0.0948620470338;EP300:0.08207221185;HMX1:0.0758794942524;HOXA9_MEIS1:0.0704412303987;GATA4:0.0636077061472;EBF1:0.0538063578105;POU1F1:0.0479876521167;SPZ1:0.0223039706341;CDC5L:0.0107721042034;CRX:-0.0138913568169;MYBL2:-0.0510031733722;TLX1..3_NFIC{dimer}:-0.0562112378813;ZBTB16:-0.0600776038783;NKX2-2,8:-0.069142021077;PDX1:-0.0887806290727;FOXQ1:-0.0925430801146;TFCP2:-0.104121726617;GLI1..3:-0.113146612982;ATF6:-0.134674568509;NKX2-3_NKX2-5:-0.138638954754;HOX{A4,D4}:-0.151215070723;PAX1,9:-0.156766009071;ESR1:-0.159561682128;GZF1:-0.169318080042;FOSL2:-0.173978553672;CDX1,2,4:-0.186173792725;SOX17:-0.193483071939;NKX2-1,4:-0.195724939912;FOXA2:-0.217980153299;SNAI1..3:-0.23053129234;HOX{A5,B5}:-0.248262585011;TOPORS:-0.270388533662;ATF4:-0.270714169123;NFATC1..3:-0.291354800612;NANOG{mouse}:-0.299798579192;bHLH_family:-0.307629703647;T:-0.308199787625;EN1,2:-0.355996312332;TBX4,5:-0.3897477319;GCM1,2:-0.430493555601;MEF2{A,B,C,D}:-0.44270268599;HLF:-0.532778599245;NFY{A,B,C}:-0.57204673332;NKX3-1:-0.577286170275;ELK1,4_GABP{A,B1}:-0.586152524931;XCPE1{core}:-0.640864915081;STAT2,4,6:-0.643304299816;TAL1_TCF{3,4,12}:-0.647112293926;ZNF238:-0.666055466654;ZNF384:-0.674564220922;GATA6:-0.745911984923;MYB:-0.778187504636;FOX{D1,D2}:-0.779432855835;CEBPA,B_DDIT3:-0.834209481734;SPI1:-0.848779187541;HNF4A_NR2F1,2:-0.855270478999;ARID5B:-0.877399996177;IRF7:-0.903980006335;FOS_FOS{B,L1}_JUN{B,D}:-0.907979543517;POU2F1..3:-0.908028809978;ZNF148:-0.910478504107;TP53:-0.950604585635;RXR{A,B,G}:-0.951940489246;HNF1A:-0.957636319058;RUNX1..3:-0.986117286261;NR1H4:-1.01518459766;NFKB1_REL_RELA:-1.02760531262;IRF1,2:-1.02793102111;TEAD1:-1.03429419619;FOXL1:-1.08518428344;ETS1,2:-1.12027814853;BACH2:-1.12111964776;FOXO1,3,4:-1.23036767936;GFI1:-1.23078857056;ELF1,2,4:-1.2892859619;IKZF2:-1.32876564681;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.33722973353;PITX1..3:-1.37724257398;NFIX:-1.3901657519;ALX4:-1.41515326285;SPIB:-1.42279377179;RXRA_VDR{dimer}:-1.47543745078;TBP:-1.50943085136;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.66937132258;E2F1..5:-1.68859297887;STAT5{A,B}:-1.73886340853;DMAP1_NCOR{1,2}_SMARC:-1.809625306;SRF:-1.83498403494;NR6A1:-2.01007058795;TLX2:-2.20250260794 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:16-22A4;search_select_hide=table117:16-22A4 | |||
}} | }} |
Latest revision as of 19:08, 4 June 2020
Name: | corpora quadrigemina, adult |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs10501 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs10501
0 | 0 |
1 | 0.774 |
10 | 0 |
100 | 0 |
1000 | 0 |
1001 | 0.0707 |
1002 | -0.0795 |
1003 | 0.0715 |
1004 | 0 |
1005 | 0 |
1006 | 0.677 |
1007 | -0.0857 |
1008 | 0 |
1009 | -0.0572 |
101 | -0.0525 |
1010 | 0 |
1011 | 0.477 |
1012 | 0.204 |
1013 | 0.249 |
1014 | -0.0245 |
1015 | -0.0749 |
1016 | -0.127 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | 0.0775 |
1023 | 0 |
1024 | 0.103 |
1025 | 0 |
1026 | 0 |
1027 | 0.375 |
1028 | 0 |
1029 | 0.0464 |
103 | -0.0861 |
1030 | 0 |
1031 | -0.327 |
1032 | 0.43 |
1033 | -0.0665 |
1034 | 0 |
1035 | 0 |
1036 | -0.179 |
1037 | 0 |
1038 | -0.188 |
1039 | 0.219 |
104 | 0 |
1040 | -0.181 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10501
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10501
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.234 |
10 | 10 | 0.0523 |
100 | 100 | 0.38 |
101 | 101 | 0.827 |
102 | 102 | 0.933 |
103 | 103 | 0.104 |
104 | 104 | 0.962 |
105 | 105 | 0.581 |
106 | 106 | 0.029 |
107 | 107 | 0.109 |
108 | 108 | 0.611 |
109 | 109 | 0.0134 |
11 | 11 | 0.0918 |
110 | 110 | 0.0472 |
111 | 111 | 0.281 |
112 | 112 | 0.0155 |
113 | 113 | 0.507 |
114 | 114 | 0.516 |
115 | 115 | 0.686 |
116 | 116 | 0.175 |
117 | 117 | 0.00413 |
118 | 118 | 0.339 |
119 | 119 | 0.237 |
12 | 12 | 0.846 |
120 | 120 | 1 |
121 | 121 | 0.673 |
122 | 122 | 0.61 |
123 | 123 | 3.04315e-4 |
124 | 124 | 0.0427 |
125 | 125 | 0.154 |
126 | 126 | 0.0208 |
127 | 127 | 0.244 |
128 | 128 | 0.0408 |
129 | 129 | 0.318 |
13 | 13 | 1.74881e-7 |
130 | 130 | 0.136 |
131 | 131 | 0.421 |
132 | 132 | 0.671 |
133 | 133 | 0.745 |
134 | 134 | 0.112 |
135 | 135 | 0.13 |
136 | 136 | 0.0559 |
137 | 137 | 0.703 |
138 | 138 | 0.969 |
139 | 139 | 0.216 |
14 | 14 | 0.766 |
140 | 140 | 0.022 |
141 | 141 | 0.972 |
142 | 142 | 0.531 |
143 | 143 | 0.251 |
144 | 144 | 0.734 |
145 | 145 | 2.06086e-4 |
146 | 146 | 0.3 |
147 | 147 | 0.351 |
148 | 148 | 0.723 |
149 | 149 | 0.924 |
15 | 15 | 0.198 |
150 | 150 | 0.0702 |
151 | 151 | 0.873 |
152 | 152 | 0.0926 |
153 | 153 | 0.781 |
154 | 154 | 0.726 |
155 | 155 | 0.463 |
156 | 156 | 0.00522 |
157 | 157 | 0.254 |
158 | 158 | 0.389 |
159 | 159 | 0.546 |
160 | 160 | 0.213 |
161 | 161 | 0.166 |
162 | 162 | 0.696 |
163 | 163 | 0.565 |
164 | 164 | 0.0451 |
165 | 165 | 0.175 |
166 | 166 | 0.684 |
167 | 167 | 0.729 |
168 | 168 | 0.648 |
169 | 169 | 0.00435 |
17 | 17 | 0.0478 |
18 | 18 | 0.97 |
19 | 19 | 0.136 |
2 | 2 | 0.718 |
20 | 20 | 0.0239 |
21 | 21 | 0.158 |
22 | 22 | 0.174 |
23 | 23 | 0.667 |
24 | 24 | 0.057 |
25 | 25 | 0.771 |
26 | 26 | 3.87928e-9 |
27 | 27 | 0.399 |
28 | 28 | 0.752 |
29 | 29 | 0.0396 |
3 | 3 | 0.0957 |
30 | 30 | 0.845 |
31 | 31 | 0.75 |
32 | 32 | 0.622 |
33 | 33 | 0.168 |
34 | 34 | 0.781 |
35 | 35 | 0.783 |
36 | 36 | 0.269 |
37 | 37 | 0.0316 |
38 | 38 | 0.528 |
39 | 39 | 0.314 |
4 | 4 | 0.237 |
40 | 40 | 0.104 |
41 | 41 | 0.407 |
42 | 42 | 0.228 |
43 | 43 | 0.139 |
44 | 44 | 0.369 |
45 | 45 | 0.73 |
46 | 46 | 0.0509 |
47 | 47 | 0.477 |
48 | 48 | 0.337 |
49 | 49 | 0.198 |
5 | 5 | 0.189 |
50 | 50 | 0.264 |
51 | 51 | 0.82 |
52 | 52 | 0.28 |
53 | 53 | 0.402 |
54 | 54 | 0.945 |
55 | 55 | 0.947 |
56 | 56 | 0.499 |
57 | 57 | 0.515 |
58 | 58 | 0.365 |
59 | 59 | 0.111 |
6 | 6 | 0.945 |
60 | 60 | 0.0333 |
61 | 61 | 0.0671 |
62 | 62 | 0.237 |
63 | 63 | 0.164 |
64 | 64 | 0.654 |
65 | 65 | 0.406 |
66 | 66 | 0.871 |
67 | 67 | 0.785 |
68 | 68 | 0.891 |
69 | 69 | 0.514 |
7 | 7 | 0.0193 |
70 | 70 | 0.106 |
71 | 71 | 0.00219 |
72 | 72 | 0.616 |
73 | 73 | 0.039 |
74 | 74 | 0.871 |
75 | 75 | 0.0552 |
76 | 76 | 0.374 |
77 | 77 | 0.357 |
78 | 78 | 0.00224 |
79 | 79 | 0.411 |
8 | 8 | 0.0618 |
80 | 80 | 0.747 |
81 | 81 | 0.769 |
82 | 82 | 0.349 |
83 | 83 | 0.145 |
84 | 84 | 0.848 |
85 | 85 | 0.24 |
86 | 86 | 0.136 |
87 | 87 | 0.178 |
88 | 88 | 0.475 |
89 | 89 | 0.729 |
9 | 9 | 0.49 |
90 | 90 | 0.148 |
91 | 91 | 0.0432 |
92 | 92 | 0.34 |
93 | 93 | 0.0853 |
94 | 94 | 0.773 |
95 | 95 | 0.0434 |
96 | 96 | 0.496 |
97 | 97 | 0.962 |
98 | 98 | 0.708 |
99 | 99 | 0.521 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10501
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011283 mouse corpora quadrigemina- adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002259 (corpora quadrigemina)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002950 (regional part of midbrain)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001891 (midbrain)
0002314 (midbrain tectum)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011283 (mouse corpora quadrigemina- adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006777 (tectal plate)
UBERON:0010316 (germ layer / neural crest)