FFCP PHASE1:Hg19::chrX:19649646..19649677,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chrX:19649646..19649677,+ | |||
|coexpression_cluster_id=C131 | |coexpression_cluster_id=C131 | ||
|description=CAGE_peak_at_chrX:19649646..19649677,+ | |description=CAGE_peak_at_chrX:19649646..19649677,+ | ||
|id=chrX:19649646..19649677,+ | |id=chrX:19649646..19649677,+ | ||
|ontology_enrichment_celltype=CL:0002563!4.83e-15!4;CL:0002253!1.19e-13!2 | |ontology_enrichment_celltype=CL:0002563!4.83e-15!4;CL:0002253!1.19e-13!2 | ||
|ontology_enrichment_celltype_v019=CL:0000322;1.03e-17;3!CL:0002202;8.61e-07;9!CL:0002632;8.61e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.12e-17,3;CL:0002202,8.85e-07,9;CL:0002632,8.85e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0008947;3.13e-16;29!UBERON:0001041;1.01e-15;30 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3910;8.10e-26;2!DOID:3908;3.42e-11;5!DOID:1325;2.26e-08;7!DOID:3904;2.26e-08;7!DOID:3905;8.61e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,9.18e-26,2;DOID:3908,3.60e-11,5;DOID:1325,2.35e-08,7;DOID:3904,2.35e-08,7;DOID:3905,8.85e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0001242!4.83e-15!4;UBERON:0001262!4.83e-15!4;UBERON:0004786!4.83e-15!4;UBERON:0004808!4.83e-15!4;UBERON:0001277!4.83e-15!4;UBERON:0001052!7.40e-15!4;UBERON:0003350!3.86e-12!5;UBERON:0004907!5.42e-12!5;UBERON:0001896!2.87e-09!3;UBERON:0005290!2.87e-09!3;UBERON:0010096!2.87e-09!3;UBERON:0000060!8.25e-09!12;UBERON:0002171!4.89e-08!1;UBERON:0006518!4.89e-08!1;UBERON:0008949!4.89e-08!1;UBERON:0000101!4.89e-08!1;UBERON:0002167!4.89e-08!1;UBERON:0001301!6.37e-08!1;UBERON:0005911!1.72e-07!82;UBERON:0002298!1.84e-07!8;UBERON:0002902!2.17e-07!1;UBERON:0009899!2.17e-07!1;UBERON:0006834!2.31e-07!1;UBERON:0001882!2.98e-07!1;UBERON:0005403!2.98e-07!1;UBERON:0002048!3.49e-07!22;UBERON:0000117!3.49e-07!22;UBERON:0000171!3.49e-07!22;UBERON:0000170!3.49e-07!22;UBERON:0005597!3.49e-07!22;UBERON:0000118!3.49e-07!22;UBERON:0000485!6.06e-07!9 | |ontology_enrichment_uberon=UBERON:0001242!4.83e-15!4;UBERON:0001262!4.83e-15!4;UBERON:0004786!4.83e-15!4;UBERON:0004808!4.83e-15!4;UBERON:0001277!4.83e-15!4;UBERON:0001052!7.40e-15!4;UBERON:0003350!3.86e-12!5;UBERON:0004907!5.42e-12!5;UBERON:0001896!2.87e-09!3;UBERON:0005290!2.87e-09!3;UBERON:0010096!2.87e-09!3;UBERON:0000060!8.25e-09!12;UBERON:0002171!4.89e-08!1;UBERON:0006518!4.89e-08!1;UBERON:0008949!4.89e-08!1;UBERON:0000101!4.89e-08!1;UBERON:0002167!4.89e-08!1;UBERON:0001301!6.37e-08!1;UBERON:0005911!1.72e-07!82;UBERON:0002298!1.84e-07!8;UBERON:0002902!2.17e-07!1;UBERON:0009899!2.17e-07!1;UBERON:0006834!2.31e-07!1;UBERON:0001882!2.98e-07!1;UBERON:0005403!2.98e-07!1;UBERON:0002048!3.49e-07!22;UBERON:0000117!3.49e-07!22;UBERON:0000171!3.49e-07!22;UBERON:0000170!3.49e-07!22;UBERON:0005597!3.49e-07!22;UBERON:0000118!3.49e-07!22;UBERON:0000485!6.06e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0002171;5.12e-50;1!UBERON:0006518;5.12e-50;1!UBERON:0008949;5.12e-50;1!UBERON:0000101;5.12e-50;1!UBERON:0002167;5.12e-50;1!UBERON:0000341;5.56e-26;2!UBERON:0004903;8.10e-26;2!UBERON:0002173;8.10e-26;2!UBERON:0002186;8.10e-26;2!UBERON:0002048;4.58e-21;22!UBERON:0000117;4.58e-21;22!UBERON:0000171;4.58e-21;22!UBERON:0000170;4.58e-21;22!UBERON:0004821;1.03e-17;3!UBERON:0007499;1.03e-17;3!UBERON:0003215;1.03e-17;3!UBERON:0010368;1.03e-17;3!UBERON:0009911;1.03e-17;3!UBERON:0002299;1.03e-17;3!UBERON:0006524;1.03e-17;3!UBERON:0008874;1.03e-17;3!UBERON:0002169;1.03e-17;3!UBERON:0004894;1.03e-17;3!UBERON:0009856;1.21e-13;4!UBERON:0005178;7.01e-11;34!UBERON:0002224;7.01e-11;34!UBERON:0000974;1.32e-09;6!UBERON:0005181;2.02e-09;35!UBERON:0000065;8.12e-08;44!UBERON:0000915;1.83e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002171,3.99e-50,1;UBERON:0006518,3.99e-50,1;UBERON:0008949,3.99e-50,1;UBERON:0000101,3.99e-50,1;UBERON:0002167,3.99e-50,1;UBERON:0000341,5.56e-26,2;UBERON:0004903,9.18e-26,2;UBERON:0002173,9.18e-26,2;UBERON:0002186,9.18e-26,2;UBERON:0002048,4.58e-21,22;UBERON:0000117,4.58e-21,22;UBERON:0000171,4.58e-21,22;UBERON:0000170,4.58e-21,22;UBERON:0005597,4.58e-21,22;UBERON:0000118,4.58e-21,22;UBERON:0004821,1.12e-17,3;UBERON:0003215,1.12e-17,3;UBERON:0010368,1.12e-17,3;UBERON:0009911,1.12e-17,3;UBERON:0002299,1.12e-17,3;UBERON:0006524,1.12e-17,3;UBERON:0008874,1.12e-17,3;UBERON:0002169,1.12e-17,3;UBERON:0004894,1.12e-17,3;UBERON:0005178,5.47e-14,34;UBERON:0002224,5.47e-14,34;UBERON:0005181,1.29e-13,35;UBERON:0005153,6.23e-13,37;UBERON:0008947,1.29e-12,38;UBERON:0003258,1.29e-12,38;UBERON:0005157,2.24e-10,47;UBERON:0000915,1.83e-09,52;UBERON:0000065,3.82e-09,54;UBERON:0001004,6.78e-07,74 | |||
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|short_description=p@chrX:19649646..19649677,+ | |short_description=p@chrX:19649646..19649677,+ | ||
}} | }} |
Latest revision as of 07:23, 1 August 2015
Short description: | p@chrX:19649646..19649677, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chrX:19649646..19649677, + |
Coexpression cluster: | C131_lung_trachea_Alveolar_thyroid_umbilical_throat_skin |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.12e-17 | 3 |
epithelial cell of tracheobronchial tree | 8.85e-07 | 9 |
epithelial cell of lower respiratory tract | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
lower lobe of right lung | 3.99e-50 | 1 |
right lung lobe | 3.99e-50 | 1 |
lower lobe of lung | 3.99e-50 | 1 |
lobe of lung | 3.99e-50 | 1 |
right lung | 3.99e-50 | 1 |
throat | 5.56e-26 | 2 |
bronchoalveolar duct junction | 9.18e-26 | 2 |
alveolar duct | 9.18e-26 | 2 |
bronchiole | 9.18e-26 | 2 |
lung | 4.58e-21 | 22 |
respiratory tube | 4.58e-21 | 22 |
respiration organ | 4.58e-21 | 22 |
pair of lungs | 4.58e-21 | 22 |
lung primordium | 4.58e-21 | 22 |
lung bud | 4.58e-21 | 22 |
pulmonary alveolus epithelium | 1.12e-17 | 3 |
alveolus | 1.12e-17 | 3 |
pulmonary lobule | 1.12e-17 | 3 |
lobule | 1.12e-17 | 3 |
alveolus of lung | 1.12e-17 | 3 |
alveolar system | 1.12e-17 | 3 |
pulmonary acinus | 1.12e-17 | 3 |
alveolar sac | 1.12e-17 | 3 |
alveolar wall | 1.12e-17 | 3 |
thoracic cavity element | 5.47e-14 | 34 |
thoracic cavity | 5.47e-14 | 34 |
thoracic segment organ | 1.29e-13 | 35 |
epithelial bud | 6.23e-13 | 37 |
respiratory primordium | 1.29e-12 | 38 |
endoderm of foregut | 1.29e-12 | 38 |
epithelial fold | 2.24e-10 | 47 |
thoracic segment of trunk | 1.83e-09 | 52 |
respiratory tract | 3.82e-09 | 54 |
respiratory system | 6.78e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 9.18e-26 | 2 |
non-small cell lung carcinoma | 3.60e-11 | 5 |
bronchus cancer | 2.35e-08 | 7 |
bronchogenic carcinoma | 2.35e-08 | 7 |
lung carcinoma | 8.85e-07 | 9 |