FFCP PHASE1:Hg19::chr19:49990853..49990871,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:49990853..49990871,+
|short_description=p1@RPL13AP5,p1@RPL13A
|description=CAGE_peak_1_at_RPL13AP5_5end,CAGE_peak_1_at_RPL13A_5end
|association_with_trans...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23521,728658 | |EntrezGene=23521,728658 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10304,23736 | |HGNC=10304,23736 | ||
|TSSclassifier=strong | |||
|UniProt=B4DNC8,P40429 | |UniProt=B4DNC8,P40429 | ||
|association_with_transcript=0bp_to_ENST00000396949,ENST00000472481,ENST00000479992,ENST00000484279,ENST00000488946,NM_012423,NR_026712,uc002pny.2,uc002pnz.2_5end | |||
|cluster_id=chr19:49990853..49990871,+ | |||
|coexpression_cluster_id=C884 | |||
|description=CAGE_peak_1_at_RPL13AP5_5end,CAGE_peak_1_at_RPL13A_5end | |||
|id=chr19:49990853..49990871,+ | |||
|ontology_enrichment_celltype=CL:0000144!8.42e-20!625;CL:0000003!1.61e-19!722;CL:0002371!2.87e-18!591;CL:0000012!3.05e-17!682;CL:0000548!9.61e-16!679;CL:0000004!9.61e-16!679;CL:0000255!9.61e-16!679;CL:0000183!1.62e-10!59;CL:0000222!9.70e-09!119;CL:0000187!1.25e-08!54;CL:0000034!1.49e-08!444;CL:0000192!3.00e-08!42;CL:0000514!3.00e-08!42;CL:0000393!3.73e-08!60;CL:0000211!3.73e-08!60;CL:0000838!4.59e-08!52;CL:0000542!5.45e-08!53;CL:0000051!5.45e-08!53;CL:0000048!7.32e-08!430;CL:0000680!7.46e-08!57;CL:0000056!7.46e-08!57;CL:0000355!7.46e-08!57;CL:0000723!9.07e-08!436;CL:0000359!5.42e-07!32 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,5.26e-09,121;CL:0000034,5.34e-09,441;CL:0000187,1.13e-08,55;CL:0000048,2.73e-08,427;CL:0000192,2.80e-08,43;CL:0000514,2.80e-08,43;CL:0000393,3.33e-08,61;CL:0000211,3.33e-08,61;CL:0000723,3.42e-08,433;CL:0000838,4.59e-08,52;CL:0000542,5.45e-08,53;CL:0000051,5.45e-08,53;CL:0000680,6.67e-08,58;CL:0000056,6.67e-08,58;CL:0000355,6.67e-08,58;CL:0000359,5.42e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!1.30e-08!79;UBERON:0007798!1.30e-08!79;UBERON:0004290!1.90e-08!70;UBERON:0001134!4.86e-08!61;UBERON:0002036!4.86e-08!61;UBERON:0003082!4.86e-08!61;UBERON:0000486!6.41e-08!82;UBERON:0000055!1.93e-07!69;UBERON:0002385!2.98e-07!63;UBERON:0001015!2.98e-07!63;UBERON:0000383!2.98e-07!63;UBERON:0004535!3.52e-07!110 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.34e-10,78;UBERON:0002049,7.00e-09,78;UBERON:0007798,7.00e-09,78;UBERON:0002329,1.68e-08,71;UBERON:0003059,1.68e-08,71;UBERON:0007282,1.68e-08,71;UBERON:0004290,1.68e-08,71;UBERON:0009618,1.68e-08,71;UBERON:0001134,4.33e-08,62;UBERON:0002036,4.33e-08,62;UBERON:0003082,4.33e-08,62;UBERON:0000486,5.60e-08,83;UBERON:0003077,6.23e-08,72;UBERON:0007285,6.23e-08,72;UBERON:0007524,6.48e-08,73;UBERON:0000055,1.06e-07,68;UBERON:0004535,2.28e-07,109;UBERON:0002385,2.64e-07,64;UBERON:0001015,2.64e-07,64;UBERON:0000383,2.64e-07,64 | |||
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2,398.924658897414,774.814045896914 | ||
|short_description=p1@RPL13AP5,p1@RPL13A | |||
}} | }} |
Latest revision as of 07:41, 19 September 2015
Short description: | p1@RPL13AP5, p1@RPL13A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPL13AP5_5end, CAGE_peak_1_at_RPL13A_5end |
Coexpression cluster: | C884_Mesenchymal_Alveolar_Smooth_Renal_Pericytes_Fibroblast_Hepatic |
Association with transcript: | 0bp_to_ENST00000396949, ENST00000472481, ENST00000479992, ENST00000484279, ENST00000488946, NM_012423, NR_026712, uc002pny.2, uc002pnz.2_5end |
EntrezGene: | 23521,728658 |
HGNC: | 23736&submit=Submit 10304, 23736 |
UniProt: | B4DNC8P40429 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 5.26e-09 | 121 |
stem cell | 5.34e-09 | 441 |
muscle cell | 1.13e-08 | 55 |
multi fate stem cell | 2.73e-08 | 427 |
smooth muscle cell | 2.80e-08 | 43 |
smooth muscle myoblast | 2.80e-08 | 43 |
electrically responsive cell | 3.33e-08 | 61 |
electrically active cell | 3.33e-08 | 61 |
somatic stem cell | 3.42e-08 | 433 |
lymphoid lineage restricted progenitor cell | 4.59e-08 | 52 |
lymphocyte | 5.45e-08 | 53 |
common lymphoid progenitor | 5.45e-08 | 53 |
muscle precursor cell | 6.67e-08 | 58 |
myoblast | 6.67e-08 | 58 |
multi-potent skeletal muscle stem cell | 6.67e-08 | 58 |
vascular associated smooth muscle cell | 5.42e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 3.34e-10 | 78 |
vasculature | 7.00e-09 | 78 |
vascular system | 7.00e-09 | 78 |
somite | 1.68e-08 | 71 |
presomitic mesoderm | 1.68e-08 | 71 |
presumptive segmental plate | 1.68e-08 | 71 |
dermomyotome | 1.68e-08 | 71 |
trunk paraxial mesoderm | 1.68e-08 | 71 |
skeletal muscle tissue | 4.33e-08 | 62 |
striated muscle tissue | 4.33e-08 | 62 |
myotome | 4.33e-08 | 62 |
multilaminar epithelium | 5.60e-08 | 83 |
paraxial mesoderm | 6.23e-08 | 72 |
presumptive paraxial mesoderm | 6.23e-08 | 72 |
dense mesenchyme tissue | 6.48e-08 | 73 |
vessel | 1.06e-07 | 68 |
cardiovascular system | 2.28e-07 | 109 |
muscle tissue | 2.64e-07 | 64 |
musculature | 2.64e-07 | 64 |
musculature of body | 2.64e-07 | 64 |