FFCP PHASE1:Hg19::chrX:140270647..140270745,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23641 | |EntrezGene=23641 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=6548 | |HGNC=6548 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-344bp_to_AF086537_5end | |association_with_transcript=-344bp_to_AF086537_5end | ||
|cluster_id=chrX:140270647..140270745,- | |||
|coexpression_cluster_id=C4853 | |coexpression_cluster_id=C4853 | ||
|description=CAGE_peak_3_at_LDOC1_5end | |description=CAGE_peak_3_at_LDOC1_5end | ||
|id=chrX:140270647..140270745,- | |id=chrX:140270647..140270745,- | ||
|ontology_enrichment_celltype=CL:0000222!8.58e-14!119;CL:0000055!9.53e-12!180;CL:0000183!3.00e-11!59;CL:0000192!2.31e-10!42;CL:0000514!2.31e-10!42;CL:0000187!7.86e-10!54;CL:0000680!9.08e-10!57;CL:0000056!9.08e-10!57;CL:0000355!9.08e-10!57;CL:0000393!1.23e-09!60;CL:0000211!1.23e-09!60;CL:0000359!4.67e-09!32;CL:0000220!7.15e-07!246 | |ontology_enrichment_celltype=CL:0000222!8.58e-14!119;CL:0000055!9.53e-12!180;CL:0000183!3.00e-11!59;CL:0000192!2.31e-10!42;CL:0000514!2.31e-10!42;CL:0000187!7.86e-10!54;CL:0000680!9.08e-10!57;CL:0000056!9.08e-10!57;CL:0000355!9.08e-10!57;CL:0000393!1.23e-09!60;CL:0000211!1.23e-09!60;CL:0000359!4.67e-09!32;CL:0000220!7.15e-07!246 | ||
|ontology_enrichment_celltype_v019=CL:0000359;8.15e-09;32!CL:0000192;7.95e-08;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,9.60e-14,121;CL:0000192,4.49e-10,43;CL:0000514,4.49e-10,43;CL:0000187,8.26e-10,55;CL:0000680,1.57e-09,58;CL:0000056,1.57e-09,58;CL:0000355,1.57e-09,58;CL:0000393,1.78e-09,61;CL:0000211,1.78e-09,61;CL:0000359,6.56e-09,32;CL:0002321,9.54e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000514;7.95e-08;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!7.94e-29!365;UBERON:0000477!1.49e-28!286;UBERON:0000483!2.51e-25!309;UBERON:0000119!3.56e-25!312;UBERON:0004111!1.49e-23!241;UBERON:0000025!5.54e-20!194;UBERON:0000481!1.09e-18!347;UBERON:0001049!3.95e-16!57;UBERON:0005068!3.95e-16!57;UBERON:0006241!3.95e-16!57;UBERON:0007135!3.95e-16!57;UBERON:0005743!1.02e-15!86;UBERON:0003075!2.25e-15!86;UBERON:0007284!2.25e-15!86;UBERON:0001017!2.77e-15!82;UBERON:0002616!5.31e-15!59;UBERON:0002346!1.70e-14!90;UBERON:0004121!1.82e-14!169;UBERON:0000033!4.10e-14!123;UBERON:0000468!5.05e-14!659;UBERON:0000924!5.45e-14!173;UBERON:0006601!5.45e-14!173;UBERON:0000955!6.21e-14!69;UBERON:0006238!6.21e-14!69;UBERON:0000073!1.40e-13!94;UBERON:0001016!1.40e-13!94;UBERON:0002780!1.76e-13!41;UBERON:0001890!1.76e-13!41;UBERON:0006240!1.76e-13!41;UBERON:0003080!2.41e-13!42;UBERON:0003056!2.56e-13!61;UBERON:0000480!3.85e-13!626;UBERON:0000467!4.12e-13!625;UBERON:0000153!6.55e-13!129;UBERON:0007811!6.55e-13!129;UBERON:0002050!1.69e-12!605;UBERON:0005423!1.69e-12!605;UBERON:0000923!2.65e-12!604;UBERON:0005291!2.65e-12!604;UBERON:0006598!2.65e-12!604;UBERON:0002532!2.65e-12!604;UBERON:0001893!4.32e-12!34;UBERON:0000064!4.91e-12!219;UBERON:0001981!8.37e-12!60;UBERON:0007500!8.37e-12!60;UBERON:0004537!8.37e-12!60;UBERON:0006965!8.37e-12!60;UBERON:0002020!9.86e-12!34;UBERON:0003528!9.86e-12!34;UBERON:0002049!1.09e-11!79;UBERON:0007798!1.09e-11!79;UBERON:0002791!1.25e-11!33;UBERON:0000922!1.27e-11!612;UBERON:0001869!1.58e-11!32;UBERON:0001637!2.28e-11!42;UBERON:0003509!2.28e-11!42;UBERON:0004572!2.28e-11!42;UBERON:0004872!4.46e-11!84;UBERON:0000055!6.06e-11!69;UBERON:0005256!1.32e-10!143;UBERON:0002100!1.42e-10!216;UBERON:0004290!3.65e-10!70;UBERON:0000914!3.75e-10!83;UBERON:0002329!3.75e-10!83;UBERON:0003077!3.75e-10!83;UBERON:0003059!3.75e-10!83;UBERON:0007282!3.75e-10!83;UBERON:0009618!3.75e-10!83;UBERON:0007285!3.75e-10!83;UBERON:0007023!5.34e-10!115;UBERON:0002619!5.54e-10!22;UBERON:0000486!6.35e-10!82;UBERON:0000956!2.22e-09!25;UBERON:0000203!2.22e-09!25;UBERON:0001950!2.44e-09!20;UBERON:0001134!3.01e-09!61;UBERON:0002036!3.01e-09!61;UBERON:0003082!3.01e-09!61;UBERON:0002385!3.83e-09!63;UBERON:0001015!3.83e-09!63;UBERON:0000383!3.83e-09!63;UBERON:0004573!4.51e-09!33;UBERON:0004571!4.51e-09!33;UBERON:0003914!3.03e-08!118;UBERON:0003064!1.55e-07!37 | |ontology_enrichment_uberon=UBERON:0000475!7.94e-29!365;UBERON:0000477!1.49e-28!286;UBERON:0000483!2.51e-25!309;UBERON:0000119!3.56e-25!312;UBERON:0004111!1.49e-23!241;UBERON:0000025!5.54e-20!194;UBERON:0000481!1.09e-18!347;UBERON:0001049!3.95e-16!57;UBERON:0005068!3.95e-16!57;UBERON:0006241!3.95e-16!57;UBERON:0007135!3.95e-16!57;UBERON:0005743!1.02e-15!86;UBERON:0003075!2.25e-15!86;UBERON:0007284!2.25e-15!86;UBERON:0001017!2.77e-15!82;UBERON:0002616!5.31e-15!59;UBERON:0002346!1.70e-14!90;UBERON:0004121!1.82e-14!169;UBERON:0000033!4.10e-14!123;UBERON:0000468!5.05e-14!659;UBERON:0000924!5.45e-14!173;UBERON:0006601!5.45e-14!173;UBERON:0000955!6.21e-14!69;UBERON:0006238!6.21e-14!69;UBERON:0000073!1.40e-13!94;UBERON:0001016!1.40e-13!94;UBERON:0002780!1.76e-13!41;UBERON:0001890!1.76e-13!41;UBERON:0006240!1.76e-13!41;UBERON:0003080!2.41e-13!42;UBERON:0003056!2.56e-13!61;UBERON:0000480!3.85e-13!626;UBERON:0000467!4.12e-13!625;UBERON:0000153!6.55e-13!129;UBERON:0007811!6.55e-13!129;UBERON:0002050!1.69e-12!605;UBERON:0005423!1.69e-12!605;UBERON:0000923!2.65e-12!604;UBERON:0005291!2.65e-12!604;UBERON:0006598!2.65e-12!604;UBERON:0002532!2.65e-12!604;UBERON:0001893!4.32e-12!34;UBERON:0000064!4.91e-12!219;UBERON:0001981!8.37e-12!60;UBERON:0007500!8.37e-12!60;UBERON:0004537!8.37e-12!60;UBERON:0006965!8.37e-12!60;UBERON:0002020!9.86e-12!34;UBERON:0003528!9.86e-12!34;UBERON:0002049!1.09e-11!79;UBERON:0007798!1.09e-11!79;UBERON:0002791!1.25e-11!33;UBERON:0000922!1.27e-11!612;UBERON:0001869!1.58e-11!32;UBERON:0001637!2.28e-11!42;UBERON:0003509!2.28e-11!42;UBERON:0004572!2.28e-11!42;UBERON:0004872!4.46e-11!84;UBERON:0000055!6.06e-11!69;UBERON:0005256!1.32e-10!143;UBERON:0002100!1.42e-10!216;UBERON:0004290!3.65e-10!70;UBERON:0000914!3.75e-10!83;UBERON:0002329!3.75e-10!83;UBERON:0003077!3.75e-10!83;UBERON:0003059!3.75e-10!83;UBERON:0007282!3.75e-10!83;UBERON:0009618!3.75e-10!83;UBERON:0007285!3.75e-10!83;UBERON:0007023!5.34e-10!115;UBERON:0002619!5.54e-10!22;UBERON:0000486!6.35e-10!82;UBERON:0000956!2.22e-09!25;UBERON:0000203!2.22e-09!25;UBERON:0001950!2.44e-09!20;UBERON:0001134!3.01e-09!61;UBERON:0002036!3.01e-09!61;UBERON:0003082!3.01e-09!61;UBERON:0002385!3.83e-09!63;UBERON:0001015!3.83e-09!63;UBERON:0000383!3.83e-09!63;UBERON:0004573!4.51e-09!33;UBERON:0004571!4.51e-09!33;UBERON:0003914!3.03e-08!118;UBERON:0003064!1.55e-07!37 | ||
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| ||
|short_description=p3@LDOC1 | |short_description=p3@LDOC1 | ||
}} | }} |
Latest revision as of 19:30, 19 September 2015
Short description: | p3@LDOC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LDOC1_5end |
Coexpression cluster: | C4853_Renal_aorta_Mesenchymal_pituitary_Smooth_Fibroblast_mesothelioma |
Association with transcript: | -344bp_to_AF086537_5end |
EntrezGene: | LDOC1 |
HGNC: | 6548 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 9.60e-14 | 121 |
smooth muscle cell | 4.49e-10 | 43 |
smooth muscle myoblast | 4.49e-10 | 43 |
muscle cell | 8.26e-10 | 55 |
muscle precursor cell | 1.57e-09 | 58 |
myoblast | 1.57e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.57e-09 | 58 |
electrically responsive cell | 1.78e-09 | 61 |
electrically active cell | 1.78e-09 | 61 |
vascular associated smooth muscle cell | 6.56e-09 | 32 |
embryonic cell | 9.54e-07 | 250 |