FFCP PHASE1:Hg19::chr8:123580943..123580958,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr8:123580943..123580958,- | |||
|coexpression_cluster_id=C221 | |coexpression_cluster_id=C221 | ||
|description=CAGE_peak_at_chr8:123580943..123580958,- | |description=CAGE_peak_at_chr8:123580943..123580958,- | ||
|id=chr8:123580943..123580958,- | |id=chr8:123580943..123580958,- | ||
|ontology_enrichment_celltype=CL:0000057!2.13e-07!75;CL:0000135!3.93e-07!3;CL:0000386!3.93e-07!3;CL:0000388!3.93e-07!3;CL:0002623!5.31e-07!3 | |ontology_enrichment_celltype=CL:0000057!2.13e-07!75;CL:0000135!3.93e-07!3;CL:0000386!3.93e-07!3;CL:0000388!3.93e-07!3;CL:0002623!5.31e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000322;6.76e-18;3!CL:0002202;7.48e-07;9!CL:0002632;7.48e-07;9!CL:0000062;8.61e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,6.76e-18,3;CL:0002202,7.48e-07,9;CL:0002632,7.48e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0009847;1.03e-17;3!UBERON:0003353;1.03e-17;3 | |||
|ontology_enrichment_disease=DOID:170!4.28e-07!6 | |ontology_enrichment_disease=DOID:170!4.28e-07!6 | ||
|ontology_enrichment_disease_v019=DOID:3347;5.12e-50;1!DOID:3910;4.32e-26;2!DOID:3908;2.66e-11;5!DOID:201;1.50e-09;6!DOID:0060100;1.50e-09;6!DOID:1325;1.89e-08;7!DOID:3904;1.89e-08;7!DOID:3905;7.48e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:3347,3.99e-50,1;DOID:3910,4.32e-26,2;DOID:3908,2.66e-11,5;DOID:201,1.44e-09,6;DOID:0060100,1.44e-09,6;DOID:1325,1.89e-08,7;DOID:3904,1.89e-08,7;DOID:3905,7.48e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0000043!3.93e-07!3 | |ontology_enrichment_uberon=UBERON:0000043!3.93e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;4.32e-26;2!UBERON:0002173;4.32e-26;2!UBERON:0002186;4.32e-26;2!UBERON:0004821;6.76e-18;3!UBERON:0007499;6.76e-18;3!UBERON:0003215;6.76e-18;3!UBERON:0010368;6.76e-18;3!UBERON:0009911;6.76e-18;3!UBERON:0002299;6.76e-18;3!UBERON:0006524;6.76e-18;3!UBERON:0008874;6.76e-18;3!UBERON:0002169;6.76e-18;3!UBERON:0004894;6.76e-18;3!UBERON:0009856;8.82e-14;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,4.32e-26,2;UBERON:0002173,4.32e-26,2;UBERON:0002186,4.32e-26,2;UBERON:0004821,6.76e-18,3;UBERON:0003215,6.76e-18,3;UBERON:0010368,6.76e-18,3;UBERON:0009911,6.76e-18,3;UBERON:0002299,6.76e-18,3;UBERON:0006524,6.76e-18,3;UBERON:0008874,6.76e-18,3;UBERON:0002169,6.76e-18,3;UBERON:0004894,6.76e-18,3 | |||
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| ||
|short_description=p@chr8:123580943..123580958,- | |short_description=p@chr8:123580943..123580958,- | ||
}} | }} |
Latest revision as of 14:30, 31 July 2015
Short description: | p@chr8:123580943..123580958, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr8:123580943..123580958, - |
Coexpression cluster: | C221_alveolar_Osteoblast_Myoblast_mesenchymal_liposarcoma_Smooth_hepatocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 6.76e-18 | 3 |
epithelial cell of tracheobronchial tree | 7.48e-07 | 9 |
epithelial cell of lower respiratory tract | 7.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 4.32e-26 | 2 |
alveolar duct | 4.32e-26 | 2 |
bronchiole | 4.32e-26 | 2 |
pulmonary alveolus epithelium | 6.76e-18 | 3 |
alveolus | 6.76e-18 | 3 |
pulmonary lobule | 6.76e-18 | 3 |
lobule | 6.76e-18 | 3 |
alveolus of lung | 6.76e-18 | 3 |
alveolar system | 6.76e-18 | 3 |
pulmonary acinus | 6.76e-18 | 3 |
alveolar sac | 6.76e-18 | 3 |
alveolar wall | 6.76e-18 | 3 |
Ontology term | p-value | n |
---|---|---|
osteosarcoma | 3.99e-50 | 1 |
lung adenocarcinoma | 4.32e-26 | 2 |
non-small cell lung carcinoma | 2.66e-11 | 5 |
connective tissue cancer | 1.44e-09 | 6 |
musculoskeletal system cancer | 1.44e-09 | 6 |
bronchus cancer | 1.89e-08 | 7 |
bronchogenic carcinoma | 1.89e-08 | 7 |
lung carcinoma | 7.48e-07 | 9 |