FFCP PHASE1:Hg19::chr7:46608530..46608534,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:46608530..46608534,+ | |||
|coexpression_cluster_id=C513 | |coexpression_cluster_id=C513 | ||
|description=CAGE_peak_at_chr7:46608530..46608534,+ | |description=CAGE_peak_at_chr7:46608530..46608534,+ | ||
|id=chr7:46608530..46608534,+ | |id=chr7:46608530..46608534,+ | ||
|ontology_enrichment_celltype=CL:0002202!5.88e-14!9;CL:0002632!5.88e-14!9;CL:0000066!1.30e-13!254;CL:0002368!9.76e-13!13;CL:0002076!1.79e-12!43;CL:0002328!1.01e-11!3;CL:0000068!2.50e-11!3;CL:0000069!2.50e-11!3;CL:0000307!2.50e-11!3;CL:0000377!2.50e-11!3;CL:0000223!4.33e-11!59 | |ontology_enrichment_celltype=CL:0002202!5.88e-14!9;CL:0002632!5.88e-14!9;CL:0000066!1.30e-13!254;CL:0002368!9.76e-13!13;CL:0002076!1.79e-12!43;CL:0002328!1.01e-11!3;CL:0000068!2.50e-11!3;CL:0000069!2.50e-11!3;CL:0000307!2.50e-11!3;CL:0000377!2.50e-11!3;CL:0000223!4.33e-11!59 | ||
|ontology_enrichment_celltype_v019=CL:0002328;5.76e-23;3!CL:0002368;1.02e-20;13!CL:0002202;2.68e-17;9!CL:0002632;2.68e-17;9!CL:0002262;1.64e-09;2!CL:1000398;1.64e-09;2!CL:0002076;8.87e-09;42!CL:0000307;5.80e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002328,8.04e-23,3;CL:0002368,1.28e-20,13;CL:0002202,3.16e-17,9;CL:0002632,3.16e-17,9;CL:0000223,4.47e-10,58;CL:0002076,6.42e-10,42;CL:0002262,1.71e-09,2;CL:1000398,1.71e-09,2;CL:0000066,5.35e-07,253;CL:0000068,5.80e-07,3;CL:0000069,5.80e-07,3;CL:0000307,5.80e-07,3;CL:0000377,5.80e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0007123;3.36e-14;5!CL:0000377;5.80e-07;3 | |||
|ontology_enrichment_disease=DOID:1749!5.64e-23!14;DOID:305!3.01e-16!106;DOID:0050687!2.19e-12!143;DOID:162!5.01e-12!235;DOID:14566!1.38e-11!239;DOID:299!2.41e-07!25;DOID:3093!7.67e-07!11 | |ontology_enrichment_disease=DOID:1749!5.64e-23!14;DOID:305!3.01e-16!106;DOID:0050687!2.19e-12!143;DOID:162!5.01e-12!235;DOID:14566!1.38e-11!239;DOID:299!2.41e-07!25;DOID:3093!7.67e-07!11 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.38e-19;14!DOID:3112;1.12e-17;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.32e-19,14;DOID:3112,8.72e-18,1 | |||
|ontology_enrichment_uberon=UBERON:0004815!1.01e-11!3;UBERON:0002031!1.01e-11!3;UBERON:0002185!6.99e-09!4;UBERON:0007196!1.07e-08!14;UBERON:0001558!1.07e-08!14;UBERON:0003343!2.98e-08!4;UBERON:0004785!2.98e-08!4;UBERON:0003100!3.25e-07!41;UBERON:0003134!9.44e-07!37;UBERON:0000474!9.44e-07!37 | |ontology_enrichment_uberon=UBERON:0004815!1.01e-11!3;UBERON:0002031!1.01e-11!3;UBERON:0002185!6.99e-09!4;UBERON:0007196!1.07e-08!14;UBERON:0001558!1.07e-08!14;UBERON:0003343!2.98e-08!4;UBERON:0004785!2.98e-08!4;UBERON:0003100!3.25e-07!41;UBERON:0003134!9.44e-07!37;UBERON:0000474!9.44e-07!37 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;5.76e-23;3!UBERON:0002031;5.76e-23;3!UBERON:0002046;3.36e-14;5!UBERON:0002185;3.36e-14;5!UBERON:0007196;1.23e-10;15!UBERON:0001558;1.23e-10;15!UBERON:0000485;2.04e-10;7!UBERON:0001281;1.64e-09;2!UBERON:0003497;1.64e-09;2!UBERON:0003909;1.64e-09;2!UBERON:0003835;1.64e-09;2!UBERON:0005911;8.45e-07;36!UBERON:0001280;9.37e-07;3!UBERON:0004647;9.37e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,8.04e-23,3;UBERON:0002031,8.04e-23,3;UBERON:0002046,2.95e-14,5;UBERON:0004117,2.95e-14,5;UBERON:0007689,2.95e-14,5;UBERON:0007123,2.95e-14,5;UBERON:0003091,2.95e-14,5;UBERON:0002185,4.11e-14,5;UBERON:0007196,1.36e-10,15;UBERON:0001558,1.36e-10,15;UBERON:0001281,1.71e-09,2;UBERON:0003497,1.71e-09,2;UBERON:0003909,1.71e-09,2;UBERON:0003835,1.71e-09,2;UBERON:0000485,2.96e-08,9;UBERON:0004119,1.34e-07,160;UBERON:0000925,1.34e-07,160;UBERON:0006595,1.34e-07,160;UBERON:0005911,4.92e-07,82;UBERON:0009722,5.64e-07,11;UBERON:0007690,5.64e-07,11;UBERON:0001280,9.64e-07,3;UBERON:0004647,9.64e-07,3;UBERON:0005171,9.64e-07,3 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0,0,0,0,0.919421224478927,2.409647350226,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14851441245126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0.288666338176536,0.670302275535787,14.1558280319719,0,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0.146508179271894,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,2.38966241399549,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0.138674673013139,0.347119476670262,0.293977192243133,0.0870592065804026,0,0,0,0,0,0,0,0,0,0.794858446811959,0,0,0.160317640503067,0,0,0,0,0,0,0.124252535565433,0,0.407712618220842,0.313808538937,0.203996435272644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0.896436696664224,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0.37494122388632,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0.633936370075881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.71330363699803,0.183428598521679,0.231051332300676,0,0,0,0.0752103283492573,0,0,0,1.63771917510097,0.295712172434091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0.556157009460346,0,0,0,0,0,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0.111855431797792,0.294450700845729,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,1.42843150884526,5.64631794745107,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4669009767735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr7:46608530..46608534,+ | |short_description=p@chr7:46608530..46608534,+ | ||
}} | }} |
Latest revision as of 10:27, 31 July 2015
Short description: | p@chr7:46608530..46608534, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:46608530..46608534, + |
Coexpression cluster: | C513_Tracheal_Bronchial_squamous_bronchial_Small_oral_medulloblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bronchial epithelial cell | 8.04e-23 | 3 |
respiratory epithelial cell | 1.28e-20 | 13 |
epithelial cell of tracheobronchial tree | 3.16e-17 | 9 |
epithelial cell of lower respiratory tract | 3.16e-17 | 9 |
endodermal cell | 4.47e-10 | 58 |
endo-epithelial cell | 6.42e-10 | 42 |
endothelial cell of sinusoid | 1.71e-09 | 2 |
endothelial cell of hepatic sinusoid | 1.71e-09 | 2 |
epithelial cell | 5.35e-07 | 253 |
duct epithelial cell | 5.80e-07 | 3 |
branched duct epithelial cell | 5.80e-07 | 3 |
tracheal epithelial cell | 5.80e-07 | 3 |
tracheoblast | 5.80e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 8.04e-23 | 3 |
epithelium of bronchus | 8.04e-23 | 3 |
thyroid gland | 2.95e-14 | 5 |
pharyngeal pouch | 2.95e-14 | 5 |
thyroid diverticulum | 2.95e-14 | 5 |
pharyngeal pouch 2 | 2.95e-14 | 5 |
thyroid primordium | 2.95e-14 | 5 |
bronchus | 4.11e-14 | 5 |
tracheobronchial tree | 1.36e-10 | 15 |
lower respiratory tract | 1.36e-10 | 15 |
hepatic sinusoid | 1.71e-09 | 2 |
abdomen blood vessel | 1.71e-09 | 2 |
sinusoid | 1.71e-09 | 2 |
abdominal segment blood vessel | 1.71e-09 | 2 |
simple columnar epithelium | 2.96e-08 | 9 |
endoderm-derived structure | 1.34e-07 | 160 |
endoderm | 1.34e-07 | 160 |
presumptive endoderm | 1.34e-07 | 160 |
endo-epithelium | 4.92e-07 | 82 |
entire pharyngeal arch endoderm | 5.64e-07 | 11 |
early pharyngeal endoderm | 5.64e-07 | 11 |
liver parenchyma | 9.64e-07 | 3 |
liver lobule | 9.64e-07 | 3 |
hepatic duct | 9.64e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.32e-19 | 14 |
papillary adenocarcinoma | 8.72e-18 | 1 |