FFCP PHASE1:Hg19::chr19:4279079..4279090,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:4279079..4279090,+
|short_description=p12@SHD
|description=CAGE_peak_12_at_SHD_5end
|association_with_transcript=481bp_to_ENST00000221852,ENST00000543264,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56961 | |EntrezGene=56961 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30633 | |HGNC=30633 | ||
|TSSclassifier=strong | |||
|UniProt=Q96IW2 | |UniProt=Q96IW2 | ||
|association_with_transcript=481bp_to_ENST00000221852,ENST00000543264,NM_020209,uc002lzw.2,uc010dtu.2_5end | |||
|cluster_id=chr19:4279079..4279090,+ | |||
|coexpression_cluster_id=C2493 | |||
|description=CAGE_peak_12_at_SHD_5end | |||
|id=chr19:4279079..4279090,+ | |||
|ontology_enrichment_celltype=CL:0000188!2.63e-09!9 | |||
|ontology_enrichment_celltype_v019=CL:0000333;7.73e-21;5!CL:0002321;1.33e-07;15 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.60e-09;3!UBERON:0003057;1.60e-09;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:9119;3.58e-26;1!DOID:169;1.50e-17;6!DOID:171;6.13e-11;10!DOID:3095;7.04e-11;22!DOID:2994;7.04e-11;22 | |||
|ontology_enrichment_disease_v019_2=DOID:9119,2.78e-26,1;DOID:169,1.33e-17,6;DOID:171,5.69e-11,10;DOID:3095,6.93e-11,22;DOID:2994,6.93e-11,22 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.58e-28!57;UBERON:0005068!1.58e-28!57;UBERON:0006241!1.58e-28!57;UBERON:0007135!1.58e-28!57;UBERON:0000073!4.01e-27!94;UBERON:0001016!4.01e-27!94;UBERON:0001017!1.72e-25!82;UBERON:0005743!5.24e-24!86;UBERON:0002616!1.77e-22!59;UBERON:0000955!3.67e-22!69;UBERON:0006238!3.67e-22!69;UBERON:0003075!1.54e-20!86;UBERON:0007284!1.54e-20!86;UBERON:0002346!2.39e-19!90;UBERON:0002020!5.18e-19!34;UBERON:0003528!5.18e-19!34;UBERON:0001893!8.93e-19!34;UBERON:0001950!3.28e-18!20;UBERON:0001869!1.95e-17!32;UBERON:0002780!2.43e-17!41;UBERON:0001890!2.43e-17!41;UBERON:0006240!2.43e-17!41;UBERON:0002791!6.83e-17!33;UBERON:0003080!7.57e-17!42;UBERON:0002619!2.02e-16!22;UBERON:0007023!2.61e-15!115;UBERON:0000956!2.98e-14!25;UBERON:0000203!2.98e-14!25;UBERON:0003076!8.43e-14!15;UBERON:0003057!8.43e-14!15;UBERON:0004121!5.22e-13!169;UBERON:0000924!1.54e-12!173;UBERON:0006601!1.54e-12!173;UBERON:0000153!1.79e-11!129;UBERON:0007811!1.79e-11!129;UBERON:0000988!2.05e-11!3;UBERON:0000033!3.52e-11!123;UBERON:0003056!1.55e-10!61;UBERON:0004733!5.80e-10!12;UBERON:0002028!5.80e-10!12;UBERON:0007277!5.80e-10!12;UBERON:0002680!1.17e-09!9;UBERON:0001895!1.17e-09!9;UBERON:0010092!1.17e-09!9;UBERON:0000200!2.21e-09!6;UBERON:0004732!3.81e-09!13;UBERON:0002148!3.70e-08!2;UBERON:0009662!3.70e-08!2;UBERON:0000013!1.79e-07!5;UBERON:0002410!1.79e-07!5;UBERON:0002298!3.33e-07!8;UBERON:0001872!3.69e-07!5;UBERON:0002021!5.14e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;7.73e-21;5!UBERON:0002410;7.73e-21;5!UBERON:0000010;4.80e-12;8!UBERON:0002240;1.60e-09;3!UBERON:0005174;1.60e-09;3!UBERON:0001137;1.60e-09;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,6.65e-21,5;UBERON:0002410,6.65e-21,5;UBERON:0000010,4.42e-12,8;UBERON:0002240,1.67e-09,3;UBERON:0005174,1.67e-09,3;UBERON:0001137,1.67e-09,3 | |||
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| ||
|short_description=p12@SHD | |||
}} | }} |
Latest revision as of 08:37, 18 September 2015
Short description: | p12@SHD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_SHD_5end |
Coexpression cluster: | C2493_neuroblastoma_acute_teratocarcinoma_small_merkel_rhabdomyosarcoma_occipital |
Association with transcript: | 481bp_to_ENST00000221852, ENST00000543264, NM_020209, uc002lzw.2, uc010dtu.2_5end |
EntrezGene: | SHD |
HGNC: | 30633 |
UniProt: | Q96IW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 6.65e-21 | 5 |
autonomic nervous system | 6.65e-21 | 5 |
peripheral nervous system | 4.42e-12 | 8 |
spinal cord | 1.67e-09 | 3 |
dorsal region element | 1.67e-09 | 3 |
dorsum | 1.67e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
acute myeloid leukemia | 2.78e-26 | 1 |
neuroendocrine tumor | 1.33e-17 | 6 |
neuroectodermal tumor | 5.69e-11 | 10 |
germ cell and embryonal cancer | 6.93e-11 | 22 |
germ cell cancer | 6.93e-11 | 22 |