FFCP PHASE1:Hg19::chr19:4279059..4279071,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:4279059..4279071,+
|short_description=p4@SHD
|description=CAGE_peak_4_at_SHD_5end
|association_with_transcript=461bp_to_ENST00000221852,ENST00000543264,NM...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56961 | |EntrezGene=56961 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30633 | |HGNC=30633 | ||
|TSSclassifier=strong | |||
|UniProt=Q96IW2 | |UniProt=Q96IW2 | ||
|association_with_transcript=461bp_to_ENST00000221852,ENST00000543264,NM_020209,uc002lzw.2,uc010dtu.2_5end | |||
|cluster_id=chr19:4279059..4279071,+ | |||
|coexpression_cluster_id=C2493 | |||
|description=CAGE_peak_4_at_SHD_5end | |||
|id=chr19:4279059..4279071,+ | |||
|ontology_enrichment_celltype=CL:0002322!4.36e-11!5 | |||
|ontology_enrichment_celltype_v019=CL:0000333;3.20e-13;5 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.99e-09;82!UBERON:0004140;6.62e-08;1!UBERON:0005425;6.62e-08;1 | |||
|ontology_enrichment_disease=DOID:169!7.86e-07!6 | |||
|ontology_enrichment_disease_v019=DOID:169;4.23e-11;6!DOID:9119;1.65e-08;1!DOID:171;7.83e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,4.31e-11,6;DOID:9119,1.65e-08,1;DOID:171,7.92e-07,10 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001950;1.45e-29;20!UBERON:0002619;7.48e-27;22!UBERON:0000956;1.45e-23;25!UBERON:0000203;1.45e-23;25!UBERON:0003528;5.78e-18;34!UBERON:0002020;5.78e-18;34!UBERON:0000200;1.00e-17;6!UBERON:0001869;4.20e-15;32!UBERON:0002791;4.63e-15;32!UBERON:0001893;1.23e-14;34!UBERON:0002702;4.03e-14;2!UBERON:0000013;3.20e-13;5!UBERON:0002410;3.20e-13;5!UBERON:0000010;1.78e-12;8!UBERON:0001872;2.08e-12;5!UBERON:0000073;4.90e-10;53!UBERON:0002616;4.90e-10;53!UBERON:0000988;1.02e-09;3!UBERON:0001870;1.02e-09;3!UBERON:0002780;1.59e-09;41!UBERON:0001890;1.59e-09;41!UBERON:0001016;5.34e-09;83!UBERON:0002902;3.33e-08;1!UBERON:0009899;3.33e-08;1!UBERON:0002581;6.62e-08;1!UBERON:0002022;6.62e-08;1!UBERON:0002135;6.62e-08;1!UBERON:0000941;6.62e-08;1!UBERON:0001785;6.62e-08;1!UBERON:0002464;6.62e-08;1!UBERON:0004904;6.62e-08;1!UBERON:0001021;6.62e-08;1!UBERON:0000955;8.21e-08;68!UBERON:0001017;6.17e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.29e-29,20;UBERON:0002619,6.72e-27,22;UBERON:0000956,1.32e-23,25;UBERON:0000203,1.32e-23,25;UBERON:0001016,2.78e-22,89;UBERON:0003528,1.10e-20,34;UBERON:0002020,1.10e-20,34;UBERON:0002791,3.01e-18,32;UBERON:0001869,3.01e-18,32;UBERON:0000200,1.00e-17,6;UBERON:0001893,4.14e-17,34;UBERON:0001049,5.67e-17,56;UBERON:0005068,5.67e-17,56;UBERON:0006241,5.67e-17,56;UBERON:0007135,5.67e-17,56;UBERON:0000955,1.24e-15,68;UBERON:0006238,1.24e-15,68;UBERON:0000073,3.30e-15,53;UBERON:0002616,3.30e-15,53;UBERON:0001017,7.11e-15,81;UBERON:0003075,8.13e-15,82;UBERON:0007284,8.13e-15,82;UBERON:0002702,5.28e-14,2;UBERON:0002346,5.31e-14,86;UBERON:0002780,5.58e-14,41;UBERON:0001890,5.58e-14,41;UBERON:0003080,5.58e-14,41;UBERON:0006240,5.58e-14,41;UBERON:0000013,3.28e-13,5;UBERON:0002410,3.28e-13,5;UBERON:0010371,7.15e-13,104;UBERON:0004121,9.63e-13,171;UBERON:0000924,9.63e-13,171;UBERON:0006601,9.63e-13,171;UBERON:0001872,1.29e-12,5;UBERON:0000010,1.71e-12,8;UBERON:0003056,6.96e-11,61;UBERON:0001870,1.22e-09,3;UBERON:0000988,1.90e-09,3;UBERON:0010314,1.93e-09,132;UBERON:0007023,1.44e-08,114;UBERON:0002902,3.34e-08,1;UBERON:0009899,3.34e-08,1;UBERON:0002581,4.40e-08,1;UBERON:0000941,5.79e-08,1;UBERON:0001785,5.79e-08,1;UBERON:0002464,5.79e-08,1;UBERON:0004904,5.79e-08,1;UBERON:0001021,5.79e-08,1;UBERON:0003902,5.79e-08,1;UBERON:0005425,5.79e-08,1;UBERON:0002135,8.69e-08,1;UBERON:0002022,9.29e-08,1;UBERON:0011216,8.22e-07,223 | |||
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| ||
|short_description=p4@SHD | |||
}} | }} |
Latest revision as of 08:36, 18 September 2015
Short description: | p4@SHD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SHD_5end |
Coexpression cluster: | C2493_neuroblastoma_acute_teratocarcinoma_small_merkel_rhabdomyosarcoma_occipital |
Association with transcript: | 461bp_to_ENST00000221852, ENST00000543264, NM_020209, uc002lzw.2, uc010dtu.2_5end |
EntrezGene: | SHD |
HGNC: | 30633 |
UniProt: | Q96IW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 4.31e-11 | 6 |
acute myeloid leukemia | 1.65e-08 | 1 |
neuroectodermal tumor | 7.92e-07 | 10 |