FFCP PHASE1:Hg19::chr19:41859515..41859537,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:41859515..41859537,-
|short_description=p2@TGFB1
|description=CAGE_peak_2_at_TGFB1_5end
|association_with_transcript=278bp_to_uc002oqh.1_5end
|EntrezGene...") |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7040 | |EntrezGene=7040 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11766 | |HGNC=11766 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=278bp_to_uc002oqh.1_5end | |||
|cluster_id=chr19:41859515..41859537,- | |||
|description=CAGE_peak_2_at_TGFB1_5end | |||
|id=chr19:41859515..41859537,- | |||
|ontology_enrichment_celltype=CL:0002371!2.27e-25!591;CL:0000763!8.35e-22!112;CL:0000049!8.35e-22!112;CL:0000144!2.31e-21!625;CL:0000766!5.35e-20!76;CL:0000012!1.13e-19!682;CL:0000548!2.32e-19!679;CL:0000004!2.32e-19!679;CL:0000255!2.32e-19!679;CL:0000048!8.66e-18!430;CL:0000557!1.66e-17!71;CL:0000723!4.84e-17!436;CL:0002320!1.01e-16!365;CL:0000134!1.69e-16!358;CL:0000034!7.40e-16!444;CL:0002009!2.13e-15!65;CL:0000063!2.31e-15!578;CL:0000839!2.37e-15!70;CL:0000003!1.09e-14!722;CL:0002194!1.31e-14!63;CL:0000576!1.31e-14!63;CL:0000040!1.31e-14!63;CL:0000559!1.31e-14!63;CL:0002057!5.77e-14!42;CL:0000219!8.57e-13!390;CL:0000860!7.65e-12!45;CL:0000988!3.51e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.72e-12;33!CL:0002057;3.72e-12;33!CL:0000473;8.78e-12;39!CL:0000234;8.78e-12;39!CL:0000766;1.27e-09;69!CL:0000576;5.05e-08;48!CL:0000763;8.99e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,3.65e-23,108;CL:0000049,3.65e-23,108;CL:0000766,6.94e-22,72;CL:0000557,2.69e-19,67;CL:0000048,2.41e-18,427;CL:0000723,1.24e-17,433;CL:0002320,2.26e-17,361;CL:0000134,3.75e-17,354;CL:0002009,3.92e-17,61;CL:0000839,6.21e-17,66;CL:0000034,2.02e-16,441;CL:0002194,2.59e-16,59;CL:0000576,2.59e-16,59;CL:0000040,2.59e-16,59;CL:0000559,2.59e-16,59;CL:0000473,7.02e-16,48;CL:0000234,7.02e-16,48;CL:0000860,5.70e-14,42;CL:0002057,5.70e-14,42;CL:0000219,2.15e-13,386;CL:0000988,1.58e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002057;2.06e-10;42!CL:0000049;2.11e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!2.92e-27!216;UBERON:0001474!3.58e-19!86;UBERON:0002371!3.91e-18!80;UBERON:0002384!3.91e-17!375;UBERON:0002390!4.20e-16!102;UBERON:0003061!4.20e-16!102;UBERON:0002193!4.65e-16!112;UBERON:0004765!8.42e-15!101;UBERON:0001434!8.42e-15!101;UBERON:0002204!4.08e-14!167;UBERON:0002405!1.74e-12!115;UBERON:0004535!8.47e-12!110;UBERON:0001009!6.70e-11!113;UBERON:0000926!9.19e-10!448;UBERON:0004120!9.19e-10!448;UBERON:0006603!9.19e-10!448;UBERON:0002049!1.31e-09!79;UBERON:0007798!1.31e-09!79;UBERON:0004872!4.60e-09!84;UBERON:0001981!1.08e-08!60;UBERON:0007500!1.08e-08!60;UBERON:0004537!1.08e-08!60;UBERON:0006965!1.08e-08!60;UBERON:0000055!1.36e-08!69;UBERON:0003914!1.68e-07!118;UBERON:0001637!3.79e-07!42;UBERON:0003509!3.79e-07!42;UBERON:0004572!3.79e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,3.34e-28,203;UBERON:0001474,7.97e-21,82;UBERON:0002371,8.27e-20,76;UBERON:0002384,8.70e-18,371;UBERON:0002390,2.29e-17,98;UBERON:0003061,2.29e-17,98;UBERON:0002193,3.12e-17,108;UBERON:0004765,5.04e-17,90;UBERON:0002405,9.37e-17,93;UBERON:0000926,1.07e-15,315;UBERON:0004120,1.07e-15,315;UBERON:0006603,1.07e-15,315;UBERON:0001434,2.72e-15,100;UBERON:0002204,2.24e-14,167;UBERON:0004535,1.34e-11,109;UBERON:0001009,1.04e-10,112;UBERON:0002049,2.06e-09,78;UBERON:0007798,2.06e-09,78;UBERON:0004872,7.13e-09,83;UBERON:0007500,1.70e-08,59;UBERON:0001981,1.70e-08,59;UBERON:0004537,1.70e-08,59;UBERON:0006965,1.70e-08,59;UBERON:0000055,2.13e-08,68;UBERON:0003914,1.47e-07,117;UBERON:0001637,3.77e-07,42;UBERON:0003509,3.77e-07,42;UBERON:0004572,3.77e-07,42 | |||
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| ||
|short_description=p2@TGFB1 | |||
}} | }} |
Latest revision as of 05:22, 18 September 2015
Short description: | p2@TGFB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TGFB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 278bp_to_uc002oqh.1_5end |
EntrezGene: | TGFB1 |
HGNC: | 11766 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 3.65e-23 | 108 |
common myeloid progenitor | 3.65e-23 | 108 |
myeloid leukocyte | 6.94e-22 | 72 |
granulocyte monocyte progenitor cell | 2.69e-19 | 67 |
multi fate stem cell | 2.41e-18 | 427 |
somatic stem cell | 1.24e-17 | 433 |
connective tissue cell | 2.26e-17 | 361 |
mesenchymal cell | 3.75e-17 | 354 |
macrophage dendritic cell progenitor | 3.92e-17 | 61 |
myeloid lineage restricted progenitor cell | 6.21e-17 | 66 |
stem cell | 2.02e-16 | 441 |
monopoietic cell | 2.59e-16 | 59 |
monocyte | 2.59e-16 | 59 |
monoblast | 2.59e-16 | 59 |
promonocyte | 2.59e-16 | 59 |
defensive cell | 7.02e-16 | 48 |
phagocyte | 7.02e-16 | 48 |
classical monocyte | 5.70e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.70e-14 | 42 |
motile cell | 2.15e-13 | 386 |
hematopoietic cell | 1.58e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 3.34e-28 | 203 |
bone element | 7.97e-21 | 82 |
bone marrow | 8.27e-20 | 76 |
connective tissue | 8.70e-18 | 371 |
hematopoietic system | 2.29e-17 | 98 |
blood island | 2.29e-17 | 98 |
hemolymphoid system | 3.12e-17 | 108 |
skeletal element | 5.04e-17 | 90 |
immune system | 9.37e-17 | 93 |
mesoderm | 1.07e-15 | 315 |
mesoderm-derived structure | 1.07e-15 | 315 |
presumptive mesoderm | 1.07e-15 | 315 |
skeletal system | 2.72e-15 | 100 |
musculoskeletal system | 2.24e-14 | 167 |
cardiovascular system | 1.34e-11 | 109 |
circulatory system | 1.04e-10 | 112 |
vasculature | 2.06e-09 | 78 |
vascular system | 2.06e-09 | 78 |
splanchnic layer of lateral plate mesoderm | 7.13e-09 | 83 |
epithelial tube open at both ends | 1.70e-08 | 59 |
blood vessel | 1.70e-08 | 59 |
blood vasculature | 1.70e-08 | 59 |
vascular cord | 1.70e-08 | 59 |
vessel | 2.13e-08 | 68 |
epithelial tube | 1.47e-07 | 117 |
artery | 3.77e-07 | 42 |
arterial blood vessel | 3.77e-07 | 42 |
arterial system | 3.77e-07 | 42 |