FFCP PHASE1:Hg19::chr5:81683619..81683623,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:81683619..81683623,+ | |||
|coexpression_cluster_id=C221 | |coexpression_cluster_id=C221 | ||
|description=CAGE_peak_at_chr5:81683619..81683623,+ | |description=CAGE_peak_at_chr5:81683619..81683623,+ | ||
|id=chr5:81683619..81683623,+ | |id=chr5:81683619..81683623,+ | ||
|ontology_enrichment_celltype=CL:0000064!1.86e-23!3;CL:0005012!1.86e-23!3;CL:0000067!1.86e-23!3;CL:0002304!1.86e-23!3;CL:0002379!5.31e-09!1;CL:0000075!6.81e-07!27 | |ontology_enrichment_celltype=CL:0000064!1.86e-23!3;CL:0005012!1.86e-23!3;CL:0000067!1.86e-23!3;CL:0002304!1.86e-23!3;CL:0002379!5.31e-09!1;CL:0000075!6.81e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000322;2.62e-23;3!CL:0002231;3.66e-23;3!CL:0002563;9.45e-18;4!CL:0002076;5.79e-13;42!CL:0002202;1.04e-08;9!CL:0002632;1.04e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,2.62e-23,3;CL:0002231,3.27e-23,3;CL:0002563,1.03e-17,4;CL:0002076,3.52e-15,42;CL:0000223,2.67e-11,58;CL:0002202,1.04e-08,9;CL:0002632,1.04e-08,9 | |||
|ontology_enrichment_development_v019=CL:0000223;2.09e-08;58 | |||
|ontology_enrichment_disease=DOID:4929!5.32e-17!2;DOID:3620!5.31e-09!1;DOID:3565!5.31e-09!1 | |ontology_enrichment_disease=DOID:4929!5.32e-17!2;DOID:3620!5.31e-09!1;DOID:3565!5.31e-09!1 | ||
|ontology_enrichment_disease_v019=DOID:3910;3.61e-34;2!DOID:3908;1.40e-14;5!DOID:1325;8.16e-11;7!DOID:3904;8.16e-11;7!DOID:3905;1.04e-08;9 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,3.61e-34,2;DOID:3908,1.40e-14,5;DOID:1325,8.16e-11,7;DOID:3904,8.16e-11,7;DOID:3905,1.04e-08,9 | |||
|ontology_enrichment_uberon=UBERON:0001778!1.86e-23!3;UBERON:0001775!1.86e-23!3;UBERON:0000488!9.36e-18!4;UBERON:0002203!4.98e-12!6;UBERON:0001768!4.98e-12!6;UBERON:0002200!1.89e-11!11;UBERON:0006876!1.89e-11!11;UBERON:0007625!2.85e-11!11;UBERON:0007499!9.10e-11!25;UBERON:0009856!2.47e-10!26;UBERON:0004913!2.60e-09!1;UBERON:0003703!2.60e-09!1;UBERON:0001174!2.60e-09!1;UBERON:0004914!2.60e-09!1;UBERON:0001801!6.85e-09!14;UBERON:0008835!1.20e-08!22;UBERON:0003894!1.20e-08!22;UBERON:0002394!1.25e-08!4;UBERON:0003928!1.25e-08!4;UBERON:0009854!2.90e-08!23;UBERON:0003929!3.81e-08!54;UBERON:0009497!1.38e-07!25;UBERON:0000015!1.38e-07!25;UBERON:0002423!1.38e-07!25;UBERON:0006235!1.38e-07!25;UBERON:0004161!1.38e-07!25 | |ontology_enrichment_uberon=UBERON:0001778!1.86e-23!3;UBERON:0001775!1.86e-23!3;UBERON:0000488!9.36e-18!4;UBERON:0002203!4.98e-12!6;UBERON:0001768!4.98e-12!6;UBERON:0002200!1.89e-11!11;UBERON:0006876!1.89e-11!11;UBERON:0007625!2.85e-11!11;UBERON:0007499!9.10e-11!25;UBERON:0009856!2.47e-10!26;UBERON:0004913!2.60e-09!1;UBERON:0003703!2.60e-09!1;UBERON:0001174!2.60e-09!1;UBERON:0004914!2.60e-09!1;UBERON:0001801!6.85e-09!14;UBERON:0008835!1.20e-08!22;UBERON:0003894!1.20e-08!22;UBERON:0002394!1.25e-08!4;UBERON:0003928!1.25e-08!4;UBERON:0009854!2.90e-08!23;UBERON:0003929!3.81e-08!54;UBERON:0009497!1.38e-07!25;UBERON:0000015!1.38e-07!25;UBERON:0002423!1.38e-07!25;UBERON:0006235!1.38e-07!25;UBERON:0004161!1.38e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;3.61e-34;2!UBERON:0002173;3.61e-34;2!UBERON:0002186;3.61e-34;2!UBERON:0004821;2.62e-23;3!UBERON:0007499;2.62e-23;3!UBERON:0003215;2.62e-23;3!UBERON:0010368;2.62e-23;3!UBERON:0009911;2.62e-23;3!UBERON:0002299;2.62e-23;3!UBERON:0006524;2.62e-23;3!UBERON:0008874;2.62e-23;3!UBERON:0002169;2.62e-23;3!UBERON:0004894;2.62e-23;3!UBERON:0009856;7.35e-18;4!UBERON:0001242;9.45e-18;4!UBERON:0001262;9.45e-18;4!UBERON:0004786;9.45e-18;4!UBERON:0004808;9.45e-18;4!UBERON:0001277;9.45e-18;4!UBERON:0000485;9.43e-11;7!UBERON:0003929;9.43e-11;7!UBERON:0000490;6.09e-10;33!UBERON:0003350;1.41e-09;8!UBERON:0005911;5.54e-08;36!UBERON:0000058;5.73e-08;10!UBERON:0002367;2.55e-07;11!UBERON:0010147;2.55e-07;11!UBERON:0003937;8.14e-07;12!UBERON:0005399;8.14e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,3.61e-34,2;UBERON:0002173,3.61e-34,2;UBERON:0002186,3.61e-34,2;UBERON:0004821,2.62e-23,3;UBERON:0003215,2.62e-23,3;UBERON:0010368,2.62e-23,3;UBERON:0009911,2.62e-23,3;UBERON:0002299,2.62e-23,3;UBERON:0006524,2.62e-23,3;UBERON:0008874,2.62e-23,3;UBERON:0002169,2.62e-23,3;UBERON:0004894,2.62e-23,3;UBERON:0001242,1.03e-17,4;UBERON:0001262,1.03e-17,4;UBERON:0004786,1.03e-17,4;UBERON:0004808,1.03e-17,4;UBERON:0001277,1.03e-17,4;UBERON:0003350,1.47e-09,8;UBERON:0000485,1.21e-08,9;UBERON:0005911,2.70e-08,82;UBERON:0005153,2.82e-08,37;UBERON:0002367,2.47e-07,11;UBERON:0010147,2.47e-07,11;UBERON:0009846,2.47e-07,11;UBERON:0003353,2.47e-07,11;UBERON:0004902,2.47e-07,11;UBERON:0003820,2.47e-07,11;UBERON:0009847,2.47e-07,11;UBERON:0003937,7.92e-07,12;UBERON:0005399,7.92e-07,12;UBERON:0005157,9.72e-07,47 | |||
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|short_description=p@chr5:81683619..81683623,+ | |short_description=p@chr5:81683619..81683623,+ | ||
}} | }} |
Latest revision as of 16:52, 30 July 2015
Short description: | p@chr5:81683619..81683623, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:81683619..81683623, + |
Coexpression cluster: | C221_alveolar_Osteoblast_Myoblast_mesenchymal_liposarcoma_Smooth_hepatocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 2.62e-23 | 3 |
epithelial cell of prostate | 3.27e-23 | 3 |
intestinal epithelial cell | 1.03e-17 | 4 |
endo-epithelial cell | 3.52e-15 | 42 |
endodermal cell | 2.67e-11 | 58 |
epithelial cell of tracheobronchial tree | 1.04e-08 | 9 |
epithelial cell of lower respiratory tract | 1.04e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 3.61e-34 | 2 |
alveolar duct | 3.61e-34 | 2 |
bronchiole | 3.61e-34 | 2 |
pulmonary alveolus epithelium | 2.62e-23 | 3 |
alveolus | 2.62e-23 | 3 |
pulmonary lobule | 2.62e-23 | 3 |
lobule | 2.62e-23 | 3 |
alveolus of lung | 2.62e-23 | 3 |
alveolar system | 2.62e-23 | 3 |
pulmonary acinus | 2.62e-23 | 3 |
alveolar sac | 2.62e-23 | 3 |
alveolar wall | 2.62e-23 | 3 |
intestinal mucosa | 1.03e-17 | 4 |
wall of intestine | 1.03e-17 | 4 |
gastrointestinal system mucosa | 1.03e-17 | 4 |
gastrointestinal system epithelium | 1.03e-17 | 4 |
intestinal epithelium | 1.03e-17 | 4 |
epithelium of mucosa | 1.47e-09 | 8 |
simple columnar epithelium | 1.21e-08 | 9 |
endo-epithelium | 2.70e-08 | 82 |
epithelial bud | 2.82e-08 | 37 |
prostate gland | 2.47e-07 | 11 |
male accessory sex gland | 2.47e-07 | 11 |
embryonic cloacal epithelium | 2.47e-07 | 11 |
epithelium of hindgut | 2.47e-07 | 11 |
urogenital sinus epithelium | 2.47e-07 | 11 |
prostate bud | 2.47e-07 | 11 |
prostate field | 2.47e-07 | 11 |
sex gland | 7.92e-07 | 12 |
male reproductive gland | 7.92e-07 | 12 |
epithelial fold | 9.72e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 3.61e-34 | 2 |
non-small cell lung carcinoma | 1.40e-14 | 5 |
bronchus cancer | 8.16e-11 | 7 |
bronchogenic carcinoma | 8.16e-11 | 7 |
lung carcinoma | 1.04e-08 | 9 |